Wall clock time and date at job start Wed Apr 1 2020 04:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47292 * 2 1 4 4 O 1.42901 * 109.47263 * 240.00118 * 2 1 3 5 5 C 1.42900 * 114.00013 * 89.99840 * 4 2 1 6 6 C 1.50694 * 109.47099 * 180.02562 * 5 4 2 7 7 C 1.38660 * 120.79288 * 269.71779 * 6 5 4 8 8 C 1.38197 * 119.16355 * 179.75379 * 7 6 5 9 9 N 1.31868 * 120.76729 * 0.53917 * 8 7 6 10 10 C 1.31873 * 121.72388 * 359.73516 * 9 8 7 11 11 C 1.38203 * 120.76575 * 359.97438 * 10 9 8 12 12 C 1.50699 * 109.47078 * 120.00347 * 2 1 3 13 13 O 1.21279 * 120.00232 * 107.64274 * 12 2 1 14 14 N 1.34784 * 119.99976 * 287.63837 * 12 2 1 15 15 C 1.47016 * 125.64504 * 5.38380 * 14 12 2 16 16 C 1.54324 * 107.27189 * 181.01820 * 15 14 12 17 17 C 1.55166 * 102.94031 * 22.19192 * 16 15 14 18 18 H 1.08997 * 111.00655 * 82.56984 * 17 16 15 19 19 C 1.52999 * 111.00534 * 206.38725 * 17 16 15 20 20 N 1.46498 * 109.46985 * 293.54696 * 19 17 16 21 21 C 1.46498 * 120.00303 * 89.99817 * 20 19 17 22 22 C 1.36941 * 119.99911 * 270.00112 * 20 19 17 23 23 H 1.08003 * 119.99697 * 31.11162 * 22 20 19 24 24 C 1.38812 * 119.99830 * 211.12379 * 22 20 19 25 25 N 1.31616 * 120.00449 * 6.90377 * 24 22 20 26 26 Si 1.86800 * 119.99653 * 186.91327 * 24 22 20 27 27 H 1.48497 * 109.47346 * 59.99755 * 26 24 22 28 28 H 1.48505 * 109.46899 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47220 * 299.99483 * 26 24 22 30 30 C 1.47419 * 125.64813 * 185.06661 * 14 12 2 31 31 H 1.09009 * 109.47263 * 66.88143 * 1 2 3 32 32 H 1.08999 * 109.47708 * 186.87983 * 1 2 3 33 33 H 1.09004 * 109.47419 * 306.88068 * 1 2 3 34 34 H 1.08995 * 109.47442 * 300.00744 * 5 4 2 35 35 H 1.09003 * 109.46730 * 60.00564 * 5 4 2 36 36 H 1.08005 * 120.41325 * 0.02562 * 7 6 5 37 37 H 1.08002 * 119.61633 * 180.29421 * 8 7 6 38 38 H 1.07996 * 119.62098 * 179.97438 * 10 9 8 39 39 H 1.08000 * 120.42312 * 180.02562 * 11 10 9 40 40 H 1.09005 * 109.88392 * 300.43096 * 15 14 12 41 41 H 1.09005 * 109.88572 * 61.60067 * 15 14 12 42 42 H 1.08992 * 110.72463 * 140.55062 * 16 15 14 43 43 H 1.09000 * 110.72390 * 263.83244 * 16 15 14 44 44 H 1.09007 * 109.46974 * 53.54245 * 19 17 16 45 45 H 1.08998 * 109.47362 * 173.54455 * 19 17 16 46 46 H 1.09007 * 109.47282 * 85.49120 * 21 20 19 47 47 H 1.08998 * 109.47056 * 205.48919 * 21 20 19 48 48 H 1.08997 * 109.47115 * 325.49087 * 21 20 19 49 49 H 0.96990 * 120.00186 * 180.02562 * 25 24 22 50 50 H 1.09002 * 110.37118 * 274.75481 * 30 14 12 51 51 H 1.09003 * 110.36499 * 37.07765 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2000 0.1830 -2.2941 6 6 2.7002 -0.6283 -3.4613 7 6 4.0591 -0.8075 -3.6709 8 6 4.4805 -1.5622 -4.7492 9 7 3.6075 -2.0994 -5.5789 10 6 2.3083 -1.9453 -5.4138 11 6 1.8127 -1.2087 -4.3547 12 6 2.0322 -0.7105 1.2304 13 8 2.5345 -1.8101 1.1332 14 7 1.9234 -0.1238 2.4390 15 6 1.2403 1.1483 2.7155 16 6 1.3943 1.4326 4.2244 17 6 2.6392 0.5910 4.6113 18 1 3.5600 1.1242 4.3752 19 6 2.5990 0.2001 6.0900 20 7 2.7310 1.4023 6.9166 21 6 1.5357 2.1406 7.3319 22 6 3.9717 1.8361 7.3011 23 1 4.8253 1.6659 6.6617 24 6 4.1321 2.4943 8.5127 25 7 3.1227 2.5823 9.3526 26 14 5.7808 3.2554 8.9509 27 1 6.1388 4.2789 7.9363 28 1 5.6910 3.8948 10.2882 29 1 6.8231 2.1979 8.9763 30 6 2.4640 -0.6548 3.7035 31 1 -0.3634 0.4035 -0.9452 32 1 -0.3634 -1.0202 0.1231 33 1 -0.3634 0.6168 0.8220 34 1 1.2538 0.6548 -2.5588 35 1 2.9320 0.9513 -2.0449 36 1 4.7790 -0.3665 -2.9973 37 1 5.5371 -1.7104 -4.9166 38 1 1.6236 -2.4001 -6.1142 39 1 0.7475 -1.0864 -4.2245 40 1 1.7014 1.9498 2.1383 41 1 0.1839 1.0650 2.4599 42 1 1.5757 2.4927 4.4006 43 1 0.5148 1.0944 4.7724 44 1 1.6507 -0.2902 6.3105 45 1 3.4203 -0.4826 6.3078 46 1 1.1316 1.6958 8.2414 47 1 1.7992 3.1810 7.5224 48 1 0.7871 2.0944 6.5411 49 1 3.2347 3.0425 10.1990 50 1 1.7612 -1.3575 4.1512 51 1 3.4264 -1.1368 3.5319 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267690389.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:34 Heat of formation + Delta-G solvation = -35.625793 kcal Electronic energy + Delta-G solvation = -30031.477185 eV Core-core repulsion = 25931.085555 eV Total energy + Delta-G solvation = -4100.391630 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.42852 -41.06086 -39.40639 -38.39705 -37.03905 -34.57459 -33.97789 -32.64061 -32.16591 -31.49400 -30.38563 -27.91780 -27.89090 -27.29590 -25.46173 -24.43718 -23.58733 -22.98124 -22.91649 -21.20925 -20.48069 -18.74092 -18.49825 -17.90591 -17.56521 -17.52513 -17.12105 -16.78798 -16.57834 -16.26430 -16.10295 -15.62864 -15.43257 -14.97621 -14.83202 -14.63307 -14.57339 -14.54113 -14.28974 -13.86284 -13.81945 -13.56792 -13.45432 -13.20424 -12.97916 -12.89372 -12.74603 -12.59944 -12.50261 -12.47595 -12.31798 -12.18617 -11.96283 -11.71288 -11.59383 -11.32885 -11.12156 -10.77641 -10.61042 -10.53324 -10.48656 -10.10816 -9.69164 -8.60266 -7.82743 -5.36702 0.11475 0.17988 1.47625 1.48083 1.48847 1.55078 1.69538 2.51399 2.63403 3.04032 3.32698 3.33859 3.56502 3.61482 3.71456 3.73040 3.75283 3.89962 3.94170 4.04613 4.09811 4.17285 4.18652 4.30707 4.37836 4.41298 4.44969 4.55941 4.61948 4.68136 4.72213 4.77221 4.85055 4.86683 4.88973 4.96907 5.00330 5.05484 5.13600 5.21463 5.24074 5.32010 5.32574 5.39039 5.51719 5.66990 5.73606 5.74930 5.98222 6.40731 6.48160 6.98298 7.06512 7.20894 7.91122 8.37340 9.20794 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020102 B = 0.001804 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.551546 B =15519.112956 C =16271.789029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.080 3.920 3 H 0.115 0.885 4 O -0.382 6.382 5 C 0.096 3.904 6 C -0.060 4.060 7 C -0.161 4.161 8 C 0.083 3.917 9 N -0.511 5.511 10 C 0.084 3.916 11 C -0.152 4.152 12 C 0.520 3.480 13 O -0.580 6.580 14 N -0.613 5.613 15 C 0.097 3.903 16 C -0.112 4.112 17 C -0.105 4.105 18 H 0.064 0.936 19 C 0.161 3.839 20 N -0.611 5.611 21 C 0.176 3.824 22 C -0.263 4.263 23 H 0.062 0.938 24 C -0.046 4.046 25 N -0.936 5.936 26 Si 0.964 3.036 27 H -0.276 1.276 28 H -0.295 1.295 29 H -0.279 1.279 30 C 0.117 3.883 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.146 0.854 37 H 0.174 0.826 38 H 0.180 0.820 39 H 0.160 0.840 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.051 0.949 45 H 0.036 0.964 46 H -0.011 1.011 47 H 0.021 0.979 48 H 0.040 0.960 49 H 0.248 0.752 50 H 0.072 0.928 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.297 -0.709 -27.287 28.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.020 3.980 3 H 0.132 0.868 4 O -0.301 6.301 5 C 0.020 3.980 6 C -0.068 4.068 7 C -0.181 4.181 8 C -0.073 4.073 9 N -0.221 5.221 10 C -0.073 4.073 11 C -0.172 4.172 12 C 0.309 3.691 13 O -0.459 6.459 14 N -0.347 5.347 15 C -0.024 4.024 16 C -0.150 4.150 17 C -0.127 4.127 18 H 0.082 0.918 19 C 0.034 3.966 20 N -0.334 5.334 21 C 0.031 3.969 22 C -0.393 4.393 23 H 0.080 0.920 24 C -0.242 4.242 25 N -0.582 5.582 26 Si 0.792 3.208 27 H -0.202 1.202 28 H -0.221 1.221 29 H -0.205 1.205 30 C -0.007 4.007 31 H 0.115 0.885 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.164 0.836 37 H 0.191 0.809 38 H 0.197 0.803 39 H 0.178 0.822 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.069 0.931 45 H 0.054 0.946 46 H 0.007 0.993 47 H 0.040 0.960 48 H 0.059 0.941 49 H 0.058 0.942 50 H 0.090 0.910 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.716 -1.919 -27.962 29.070 hybrid contribution 0.899 0.885 1.680 2.101 sum -6.817 -1.034 -26.282 27.171 Atomic orbital electron populations 1.22281 0.91208 1.03443 1.05503 1.21954 0.96713 0.96398 0.82955 0.86763 1.88082 1.87024 1.35442 1.19563 1.21621 1.01992 0.91233 0.83163 1.20266 0.93945 0.97228 0.95380 1.22340 0.96496 0.99994 0.99267 1.23120 1.00604 0.93062 0.90547 1.67690 1.04412 1.20545 1.29461 1.23244 0.91872 0.95396 0.96763 1.22374 1.02156 0.97475 0.95192 1.20781 0.78487 0.85537 0.84264 1.90697 1.46729 1.22089 1.86395 1.48566 1.55420 1.24287 1.06442 1.22452 0.98388 0.84546 0.97005 1.22588 0.97634 1.00944 0.93849 1.22860 0.98932 0.94974 0.95916 0.91797 1.20722 0.99176 0.88101 0.88593 1.43942 1.02910 1.27120 1.59475 1.20579 0.87035 0.94735 0.94543 1.19358 0.87448 1.33082 0.99439 0.91989 1.25917 1.00179 1.02452 0.95648 1.70158 1.31864 1.46702 1.09452 0.85406 0.80239 0.78376 0.76759 1.20225 1.22117 1.20501 1.22211 0.98571 0.96621 0.83259 0.88510 0.92963 0.88710 0.88788 0.90492 0.83633 0.80915 0.80295 0.82220 0.89363 0.88296 0.90172 0.90244 0.93063 0.94565 0.99312 0.95996 0.94129 0.94241 0.91004 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 9.37 71.98 0.67 -1.31 16 2 C 0.08 1.42 2.54 29.85 0.08 1.50 16 3 H 0.11 1.32 7.50 -2.38 -0.02 1.31 16 4 O -0.38 -8.20 9.53 -130.24 -1.24 -9.44 16 5 C 0.10 1.27 5.92 71.23 0.42 1.69 16 6 C -0.06 -0.97 5.55 -19.67 -0.11 -1.08 16 7 C -0.16 -2.70 9.82 22.36 0.22 -2.48 16 8 C 0.08 1.45 11.18 84.68 0.95 2.39 16 9 N -0.51 -10.14 10.36 -195.85 -2.03 -12.17 16 10 C 0.08 1.30 11.18 84.68 0.95 2.24 16 11 C -0.15 -2.13 9.82 22.36 0.22 -1.91 16 12 C 0.52 14.14 7.17 87.66 0.63 14.77 16 13 O -0.58 -21.93 16.84 15.72 0.26 -21.67 16 14 N -0.61 -14.95 3.32 -811.35 -2.70 -17.64 16 15 C 0.10 1.69 6.03 86.73 0.52 2.22 16 16 C -0.11 -2.66 4.87 31.79 0.15 -2.51 16 17 C -0.11 -3.18 3.31 -9.32 -0.03 -3.22 16 18 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 19 C 0.16 6.07 5.21 86.38 0.45 6.52 16 20 N -0.61 -28.79 2.82 -726.93 -2.05 -30.84 16 21 C 0.18 8.03 8.74 127.77 1.12 9.14 16 22 C -0.26 -13.93 9.58 84.03 0.80 -13.13 16 23 H 0.06 3.23 7.84 -2.91 -0.02 3.21 16 24 C -0.05 -2.53 5.14 84.86 0.44 -2.10 16 25 N -0.94 -54.25 10.97 21.65 0.24 -54.02 16 26 Si 0.96 44.18 29.56 68.60 2.03 46.21 16 27 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 28 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 29 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 30 C 0.12 3.30 6.36 86.93 0.55 3.86 16 31 H 0.10 0.66 7.76 -2.38 -0.02 0.65 16 32 H 0.05 0.84 8.13 -2.39 -0.02 0.82 16 33 H 0.09 0.79 5.68 -2.38 -0.01 0.77 16 34 H 0.09 0.68 7.72 -2.39 -0.02 0.66 16 35 H 0.08 0.81 8.04 -2.39 -0.02 0.79 16 36 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.18 1.70 8.06 -2.91 -0.02 1.67 16 39 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.09 1.20 7.94 -2.38 -0.02 1.18 16 41 H 0.10 1.17 6.15 -2.38 -0.01 1.16 16 42 H 0.08 2.03 8.11 -2.39 -0.02 2.01 16 43 H 0.08 1.83 7.25 -2.39 -0.02 1.82 16 44 H 0.05 1.79 8.04 -2.38 -0.02 1.77 16 45 H 0.04 1.45 8.04 -2.39 -0.02 1.43 16 46 H -0.01 -0.59 7.75 -2.38 -0.02 -0.60 16 47 H 0.02 1.09 7.10 -2.39 -0.02 1.07 16 48 H 0.04 1.48 5.97 -2.39 -0.01 1.46 16 49 H 0.25 14.08 8.31 -92.72 -0.77 13.31 16 50 H 0.07 1.98 8.04 -2.39 -0.02 1.96 16 51 H 0.06 1.82 8.09 -2.39 -0.02 1.80 16 Total: -1.00 -76.80 410.34 3.46 -73.35 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.91 Total: 9.62 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 8.03 Total: 16.60 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -6.54 Total: -114.67 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.98 Total: -31.10 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -76.80 3.46 -73.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267690389.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.722 kcal (2) G-P(sol) polarization free energy of solvation -76.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds