Wall clock time and date at job start Wed Apr 1 2020 04:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47293 * 2 1 4 4 O 1.42897 * 109.47129 * 120.00301 * 2 1 3 5 5 C 1.35912 * 116.99914 * 274.93999 * 4 2 1 6 6 C 1.39138 * 120.47089 * 5.06252 * 5 4 2 7 7 C 1.38544 * 118.37408 * 179.75991 * 6 5 4 8 8 C 1.38257 * 119.21601 * 0.49141 * 7 6 5 9 9 N 1.31845 * 120.88959 * 359.76989 * 8 7 6 10 10 C 1.31839 * 121.77976 * 359.97438 * 9 8 7 11 11 C 1.50701 * 109.46936 * 239.99893 * 2 1 3 12 12 O 1.21282 * 119.99887 * 249.02325 * 11 2 1 13 13 N 1.34777 * 119.99976 * 69.02224 * 11 2 1 14 14 C 1.46919 * 120.63159 * 5.32392 * 13 11 2 15 15 C 1.53192 * 108.77731 * 233.62682 * 14 13 11 16 16 C 1.53040 * 109.31204 * 305.36605 * 15 14 13 17 17 C 1.53070 * 109.66080 * 61.29616 * 16 15 14 18 18 C 1.46925 * 120.63029 * 185.33959 * 13 11 2 19 19 H 1.08998 * 109.58820 * 246.30245 * 18 13 11 20 20 C 1.52997 * 109.58958 * 6.58432 * 18 13 11 21 21 C 1.52999 * 109.47608 * 179.18025 * 20 18 13 22 22 N 1.46497 * 109.47442 * 174.76293 * 21 20 18 23 23 C 1.36929 * 120.00376 * 179.97438 * 22 21 20 24 24 H 1.08003 * 119.99696 * 0.02562 * 23 22 21 25 25 C 1.38807 * 120.00549 * 180.02562 * 23 22 21 26 26 N 1.31616 * 119.99822 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00373 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47407 * 90.00200 * 27 25 23 29 29 H 1.48500 * 109.47334 * 210.00020 * 27 25 23 30 30 H 1.48502 * 109.47101 * 329.99951 * 27 25 23 31 31 H 1.08995 * 109.47117 * 305.58515 * 1 2 3 32 32 H 1.09004 * 109.46974 * 65.58431 * 1 2 3 33 33 H 1.08995 * 109.47468 * 185.57842 * 1 2 3 34 34 H 1.07995 * 120.81468 * 359.97438 * 6 5 4 35 35 H 1.07993 * 120.39289 * 180.26388 * 7 6 5 36 36 H 1.08003 * 119.55356 * 179.74420 * 8 7 6 37 37 H 1.08008 * 119.65702 * 180.02562 * 10 9 8 38 38 H 1.09005 * 109.58906 * 353.41256 * 14 13 11 39 39 H 1.09002 * 109.59015 * 113.69615 * 14 13 11 40 40 H 1.09003 * 109.49489 * 65.31182 * 15 14 13 41 41 H 1.08999 * 109.50019 * 185.41099 * 15 14 13 42 42 H 1.08999 * 109.45917 * 181.38553 * 16 15 14 43 43 H 1.09006 * 109.45489 * 301.34366 * 16 15 14 44 44 H 1.08998 * 109.62413 * 178.83600 * 17 16 15 45 45 H 1.09001 * 109.39263 * 58.72152 * 17 16 15 46 46 H 1.09003 * 109.46844 * 59.18059 * 20 18 13 47 47 H 1.09000 * 109.47040 * 299.18641 * 20 18 13 48 48 H 1.09002 * 109.46987 * 294.76847 * 21 20 18 49 49 H 1.08996 * 109.46876 * 54.76341 * 21 20 18 50 50 H 0.97001 * 119.99951 * 0.02562 * 22 21 20 51 51 H 0.97003 * 120.00397 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1137 0.0629 2.3039 6 6 1.6712 1.3817 2.3348 7 6 1.7970 2.0908 3.5183 8 6 2.3630 1.4732 4.6182 9 7 2.7772 0.2232 4.5539 10 6 2.6710 -0.4876 3.4486 11 6 2.0323 -0.7104 -1.2305 12 8 2.5889 -1.7830 -1.1267 13 7 1.8629 -0.1539 -2.4462 14 6 1.2964 1.1950 -2.5797 15 6 0.1038 1.1363 -3.5395 16 6 0.5490 0.5078 -4.8620 17 6 1.0402 -0.9205 -4.6139 18 6 2.2411 -0.8849 -3.6634 19 1 3.0762 -0.3796 -4.1485 20 6 2.6485 -2.3137 -3.2979 21 6 3.0221 -3.0785 -4.5693 22 7 3.5309 -4.4045 -4.2098 23 6 3.9297 -5.2737 -5.1898 24 1 3.8696 -4.9815 -6.2278 25 6 4.4112 -6.5302 -4.8493 26 7 4.4840 -6.8864 -3.5843 27 14 4.9559 -7.7157 -6.1862 28 1 6.3994 -7.5128 -6.4696 29 1 4.7322 -9.1115 -5.7313 30 1 4.1691 -7.4652 -7.4205 31 1 -0.3633 0.5980 0.8357 32 1 -0.3633 0.4248 -0.9358 33 1 -0.3634 -1.0227 0.0999 34 1 1.2371 1.8402 1.4586 35 1 1.4604 3.1151 3.5799 36 1 2.4675 2.0222 5.5423 37 1 3.0214 -1.5091 3.4343 38 1 0.9632 1.5496 -1.6043 39 1 2.0536 1.8719 -2.9754 40 1 -0.6888 0.5320 -3.0982 41 1 -0.2661 2.1451 -3.7223 42 1 -0.2917 0.4873 -5.5554 43 1 1.3586 1.0988 -5.2904 44 1 1.3377 -1.3747 -5.5590 45 1 0.2381 -1.5062 -4.1647 46 1 1.8153 -2.8141 -2.8045 47 1 3.5057 -2.2862 -2.6252 48 1 2.1402 -3.1866 -5.2007 49 1 3.7917 -2.5288 -5.1111 50 1 3.5845 -4.6670 -3.2775 51 1 4.8201 -7.7647 -3.3463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268161614.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:19 Heat of formation + Delta-G solvation = -5.424191 kcal Electronic energy + Delta-G solvation = -31206.118566 eV Core-core repulsion = 27107.036576 eV Total energy + Delta-G solvation = -4099.081991 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.34138 -40.48799 -38.63984 -37.28527 -35.31147 -33.66010 -32.83790 -32.56114 -31.85099 -30.61275 -30.20776 -27.95063 -25.77293 -24.73486 -24.20545 -23.89565 -23.21716 -22.16494 -21.10637 -20.70876 -19.12556 -18.80260 -17.43742 -17.10473 -16.90361 -16.43077 -16.08361 -15.91052 -15.26214 -14.89723 -14.67349 -14.65036 -14.54805 -14.21866 -14.12950 -13.83413 -13.70785 -13.34402 -13.12754 -13.05045 -12.94344 -12.79472 -12.57783 -12.47751 -12.15155 -11.90868 -11.59833 -11.49395 -11.16866 -11.09610 -10.94185 -10.81833 -10.79615 -10.46409 -10.39431 -10.15087 -9.94692 -9.89740 -9.58344 -8.89502 -8.76349 -8.69740 -8.60083 -6.77876 -5.63607 -2.92131 0.79958 0.89939 2.24327 2.45872 3.13076 3.47757 3.50367 3.54370 3.56965 4.01816 4.16438 4.22329 4.37936 4.40525 4.43406 4.48518 4.58390 4.66779 4.70316 4.74753 4.84766 4.91147 5.05654 5.07797 5.09522 5.12814 5.27681 5.40826 5.47030 5.50537 5.61957 5.65552 5.67446 5.68938 5.71697 5.73194 5.88557 5.91154 6.04848 6.08184 6.19477 6.34673 6.37386 6.55486 6.63252 6.87292 7.06011 7.14503 7.29969 7.65867 7.79235 8.12807 8.55151 9.65535 10.27497 10.62177 11.59250 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010702 B = 0.002644 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.714078 B =10589.051365 C =12929.145899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.064 3.936 3 H 0.093 0.907 4 O -0.273 6.273 5 C 0.086 3.914 6 C -0.172 4.172 7 C -0.131 4.131 8 C 0.053 3.947 9 N -0.446 5.446 10 C 0.079 3.921 11 C 0.514 3.486 12 O -0.485 6.485 13 N -0.606 5.606 14 C 0.100 3.900 15 C -0.136 4.136 16 C -0.120 4.120 17 C -0.133 4.133 18 C 0.155 3.845 19 H 0.074 0.926 20 C -0.120 4.120 21 C 0.150 3.850 22 N -0.731 5.731 23 C -0.237 4.237 24 H 0.069 0.931 25 C -0.016 4.016 26 N -0.931 5.931 27 Si 0.906 3.094 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.283 1.283 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.157 0.843 37 H 0.168 0.832 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.095 0.905 48 H 0.015 0.985 49 H 0.012 0.988 50 H 0.386 0.614 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.240 27.344 9.436 31.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.004 3.996 3 H 0.110 0.890 4 O -0.184 6.184 5 C 0.037 3.963 6 C -0.199 4.199 7 C -0.151 4.151 8 C -0.103 4.103 9 N -0.155 5.155 10 C -0.080 4.080 11 C 0.299 3.701 12 O -0.357 6.357 13 N -0.342 5.342 14 C -0.023 4.023 15 C -0.174 4.174 16 C -0.158 4.158 17 C -0.172 4.172 18 C 0.053 3.947 19 H 0.092 0.908 20 C -0.158 4.158 21 C 0.021 3.979 22 N -0.375 5.375 23 C -0.369 4.369 24 H 0.087 0.913 25 C -0.212 4.212 26 N -0.580 5.580 27 Si 0.737 3.263 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.209 1.209 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.175 0.825 37 H 0.185 0.815 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.103 0.897 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.113 0.887 48 H 0.033 0.967 49 H 0.030 0.970 50 H 0.220 0.780 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.484 26.070 10.038 30.204 hybrid contribution -0.255 0.032 -1.304 1.329 sum -11.739 26.102 8.734 29.924 Atomic orbital electron populations 1.22439 0.92520 1.05037 1.03779 1.22334 0.95881 0.96761 0.84633 0.88969 1.86300 1.80513 1.36242 1.15351 1.20290 0.96395 0.91147 0.88439 1.21753 1.03946 0.94066 1.00094 1.21986 0.99053 1.01070 0.93016 1.22693 0.97439 0.91366 0.98842 1.67772 1.14720 1.07415 1.25551 1.22348 0.98391 1.01165 0.86078 1.19939 0.80273 0.86284 0.83620 1.90915 1.39324 1.20464 1.85022 1.48049 1.63768 1.16827 1.05561 1.21876 0.96150 0.83814 1.00457 1.21943 0.97516 1.01530 0.96398 1.21538 1.01139 0.96547 0.96566 1.22079 0.98117 0.96524 1.00443 1.21362 0.96181 0.93916 0.83268 0.90812 1.22297 1.03787 0.91274 0.98452 1.20768 0.95550 0.87439 0.94097 1.42357 1.76722 1.11444 1.06996 1.19229 1.34547 0.94441 0.88673 0.91339 1.24756 1.02503 0.97878 0.96097 1.69684 1.52586 1.20809 1.14935 0.86201 0.78429 0.80734 0.80901 1.21801 1.21813 1.20864 0.90905 0.89752 0.90096 0.84311 0.84501 0.82528 0.81523 0.90129 0.90908 0.91309 0.90713 0.91571 0.91723 0.89708 0.91361 0.91510 0.88671 0.96750 0.96986 0.78047 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 8.80 37.16 0.33 -1.04 16 2 C 0.06 0.65 1.79 -27.88 -0.05 0.60 16 3 H 0.09 0.67 5.39 -51.93 -0.28 0.39 16 4 O -0.27 -3.51 9.36 -39.21 -0.37 -3.88 16 5 C 0.09 0.93 6.62 -39.07 -0.26 0.67 16 6 C -0.17 -1.37 8.40 -39.13 -0.33 -1.69 16 7 C -0.13 -0.90 10.11 -39.46 -0.40 -1.30 16 8 C 0.05 0.44 11.18 -17.54 -0.20 0.25 16 9 N -0.45 -4.99 10.35 -13.12 -0.14 -5.13 16 10 C 0.08 0.91 11.14 -17.38 -0.19 0.72 16 11 C 0.51 7.03 6.89 -10.98 -0.08 6.96 16 12 O -0.49 -9.19 12.07 -14.19 -0.17 -9.36 16 13 N -0.61 -6.83 2.97 -165.22 -0.49 -7.32 16 14 C 0.10 0.68 5.48 -3.71 -0.02 0.66 16 15 C -0.14 -0.84 5.93 -26.61 -0.16 -0.99 16 16 C -0.12 -0.95 5.88 -26.67 -0.16 -1.11 16 17 C -0.13 -1.51 4.85 -26.59 -0.13 -1.64 16 18 C 0.16 2.08 3.02 -67.60 -0.20 1.87 16 19 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 20 C -0.12 -2.24 3.28 -26.73 -0.09 -2.33 16 21 C 0.15 3.24 5.75 -4.04 -0.02 3.22 16 22 N -0.73 -20.26 5.60 -59.91 -0.34 -20.59 16 23 C -0.24 -7.07 9.99 -15.06 -0.15 -7.22 16 24 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 25 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 26 N -0.93 -29.93 13.06 55.49 0.72 -29.21 16 27 Si 0.91 23.37 29.55 -169.99 -5.02 18.35 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 30 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 31 H 0.07 0.42 6.92 -51.93 -0.36 0.07 16 32 H 0.08 0.49 5.34 -51.93 -0.28 0.21 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.14 0.75 5.53 -52.49 -0.29 0.46 16 35 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 36 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 37 H 0.17 1.83 8.06 -52.48 -0.42 1.41 16 38 H 0.08 0.37 4.66 -51.93 -0.24 0.13 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.45 7.49 -51.93 -0.39 0.06 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 1.02 6.88 -51.93 -0.36 0.67 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.07 1.36 7.30 -51.93 -0.38 0.98 16 47 H 0.10 2.04 6.16 -51.93 -0.32 1.72 16 48 H 0.01 0.31 6.86 -51.93 -0.36 -0.05 16 49 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.39 11.50 7.67 -40.82 -0.31 11.18 16 51 H 0.25 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 394.58 15.07 5.95 5.95 Total: -1.00 -37.21 394.58 -9.81 -47.02 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -7.76 Total: 7.15 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.20 Total: -2.97 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: -0.24 Total: -62.25 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.54 Total: -13.24 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.21 -9.81 -47.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268161614.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.596 kcal (2) G-P(sol) polarization free energy of solvation -37.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds