Wall clock time and date at job start Wed Apr 1 2020 04:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47293 * 2 1 4 4 O 1.42897 * 109.47129 * 120.00301 * 2 1 3 5 5 C 1.35912 * 116.99914 * 274.93999 * 4 2 1 6 6 C 1.39138 * 120.47089 * 5.06252 * 5 4 2 7 7 C 1.38544 * 118.37408 * 179.75991 * 6 5 4 8 8 C 1.38257 * 119.21601 * 0.49141 * 7 6 5 9 9 N 1.31845 * 120.88959 * 359.76989 * 8 7 6 10 10 C 1.31839 * 121.77976 * 359.97438 * 9 8 7 11 11 C 1.50701 * 109.46936 * 239.99893 * 2 1 3 12 12 O 1.21282 * 119.99887 * 249.02325 * 11 2 1 13 13 N 1.34777 * 119.99976 * 69.02224 * 11 2 1 14 14 C 1.46919 * 120.63159 * 5.32392 * 13 11 2 15 15 C 1.53192 * 108.77731 * 233.62682 * 14 13 11 16 16 C 1.53040 * 109.31204 * 305.36605 * 15 14 13 17 17 C 1.53070 * 109.66080 * 61.29616 * 16 15 14 18 18 C 1.46925 * 120.63029 * 185.33959 * 13 11 2 19 19 H 1.08998 * 109.58820 * 246.30245 * 18 13 11 20 20 C 1.52997 * 109.58958 * 6.58432 * 18 13 11 21 21 C 1.52999 * 109.47608 * 179.18025 * 20 18 13 22 22 N 1.46497 * 109.47442 * 174.76293 * 21 20 18 23 23 C 1.36929 * 120.00376 * 179.97438 * 22 21 20 24 24 H 1.08003 * 119.99696 * 0.02562 * 23 22 21 25 25 C 1.38807 * 120.00549 * 180.02562 * 23 22 21 26 26 N 1.31616 * 119.99822 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00373 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47407 * 90.00200 * 27 25 23 29 29 H 1.48500 * 109.47334 * 210.00020 * 27 25 23 30 30 H 1.48502 * 109.47101 * 329.99951 * 27 25 23 31 31 H 1.08995 * 109.47117 * 305.58515 * 1 2 3 32 32 H 1.09004 * 109.46974 * 65.58431 * 1 2 3 33 33 H 1.08995 * 109.47468 * 185.57842 * 1 2 3 34 34 H 1.07995 * 120.81468 * 359.97438 * 6 5 4 35 35 H 1.07993 * 120.39289 * 180.26388 * 7 6 5 36 36 H 1.08003 * 119.55356 * 179.74420 * 8 7 6 37 37 H 1.08008 * 119.65702 * 180.02562 * 10 9 8 38 38 H 1.09005 * 109.58906 * 353.41256 * 14 13 11 39 39 H 1.09002 * 109.59015 * 113.69615 * 14 13 11 40 40 H 1.09003 * 109.49489 * 65.31182 * 15 14 13 41 41 H 1.08999 * 109.50019 * 185.41099 * 15 14 13 42 42 H 1.08999 * 109.45917 * 181.38553 * 16 15 14 43 43 H 1.09006 * 109.45489 * 301.34366 * 16 15 14 44 44 H 1.08998 * 109.62413 * 178.83600 * 17 16 15 45 45 H 1.09001 * 109.39263 * 58.72152 * 17 16 15 46 46 H 1.09003 * 109.46844 * 59.18059 * 20 18 13 47 47 H 1.09000 * 109.47040 * 299.18641 * 20 18 13 48 48 H 1.09002 * 109.46987 * 294.76847 * 21 20 18 49 49 H 1.08996 * 109.46876 * 54.76341 * 21 20 18 50 50 H 0.97001 * 119.99951 * 0.02562 * 22 21 20 51 51 H 0.97003 * 120.00397 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1137 0.0629 2.3039 6 6 1.6712 1.3817 2.3348 7 6 1.7970 2.0908 3.5183 8 6 2.3630 1.4732 4.6182 9 7 2.7772 0.2232 4.5539 10 6 2.6710 -0.4876 3.4486 11 6 2.0323 -0.7104 -1.2305 12 8 2.5889 -1.7830 -1.1267 13 7 1.8629 -0.1539 -2.4462 14 6 1.2964 1.1950 -2.5797 15 6 0.1038 1.1363 -3.5395 16 6 0.5490 0.5078 -4.8620 17 6 1.0402 -0.9205 -4.6139 18 6 2.2411 -0.8849 -3.6634 19 1 3.0762 -0.3796 -4.1485 20 6 2.6485 -2.3137 -3.2979 21 6 3.0221 -3.0785 -4.5693 22 7 3.5309 -4.4045 -4.2098 23 6 3.9297 -5.2737 -5.1898 24 1 3.8696 -4.9815 -6.2278 25 6 4.4112 -6.5302 -4.8493 26 7 4.4840 -6.8864 -3.5843 27 14 4.9559 -7.7157 -6.1862 28 1 6.3994 -7.5128 -6.4696 29 1 4.7322 -9.1115 -5.7313 30 1 4.1691 -7.4652 -7.4205 31 1 -0.3633 0.5980 0.8357 32 1 -0.3633 0.4248 -0.9358 33 1 -0.3634 -1.0227 0.0999 34 1 1.2371 1.8402 1.4586 35 1 1.4604 3.1151 3.5799 36 1 2.4675 2.0222 5.5423 37 1 3.0214 -1.5091 3.4343 38 1 0.9632 1.5496 -1.6043 39 1 2.0536 1.8719 -2.9754 40 1 -0.6888 0.5320 -3.0982 41 1 -0.2661 2.1451 -3.7223 42 1 -0.2917 0.4873 -5.5554 43 1 1.3586 1.0988 -5.2904 44 1 1.3377 -1.3747 -5.5590 45 1 0.2381 -1.5062 -4.1647 46 1 1.8153 -2.8141 -2.8045 47 1 3.5057 -2.2862 -2.6252 48 1 2.1402 -3.1866 -5.2007 49 1 3.7917 -2.5288 -5.1111 50 1 3.5845 -4.6670 -3.2775 51 1 4.8201 -7.7647 -3.3463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268161614.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:18 Heat of formation + Delta-G solvation = -31.112486 kcal Electronic energy + Delta-G solvation = -31207.232494 eV Core-core repulsion = 27107.036576 eV Total energy + Delta-G solvation = -4100.195919 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.19890 -41.32999 -39.44520 -38.27528 -37.04685 -34.98674 -34.00223 -33.22148 -32.95719 -32.11253 -30.96212 -29.34721 -26.94627 -25.67303 -25.34719 -24.77277 -24.29053 -23.38556 -22.18530 -21.85753 -20.02720 -19.57760 -19.17065 -18.18417 -17.76791 -17.36619 -17.03300 -16.83142 -16.56029 -16.18724 -15.72482 -15.52496 -15.39618 -15.34192 -15.11755 -14.95937 -14.80151 -14.56295 -14.43236 -14.29638 -13.91200 -13.75931 -13.40701 -13.28108 -13.08184 -12.94574 -12.81669 -12.72817 -12.53243 -12.32563 -12.26842 -12.12333 -11.94406 -11.89231 -11.76900 -11.54263 -11.38295 -10.95867 -10.77859 -10.57553 -10.05608 -9.62589 -9.47172 -9.04194 -7.96700 -5.28161 0.13771 0.23922 1.40565 1.43056 1.45928 1.47357 1.55791 2.32290 2.53917 2.79377 3.21089 3.35404 3.48851 3.56759 3.71884 3.74595 3.77557 3.83666 3.88401 3.93002 4.08406 4.12475 4.14302 4.23585 4.30242 4.38991 4.47332 4.51653 4.55587 4.58444 4.69238 4.71659 4.76866 4.77570 4.90338 4.95513 5.01546 5.06386 5.09265 5.12113 5.18681 5.26389 5.36450 5.37593 5.44799 5.48735 5.51325 5.66593 6.14239 6.23903 6.36731 6.97085 7.12376 7.28131 8.05136 8.29385 9.27604 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010702 B = 0.002644 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.714078 B =10589.051365 C =12929.145899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.068 3.932 3 H 0.130 0.870 4 O -0.311 6.311 5 C 0.067 3.933 6 C -0.164 4.164 7 C -0.116 4.116 8 C 0.045 3.955 9 N -0.475 5.475 10 C 0.045 3.955 11 C 0.501 3.499 12 O -0.556 6.556 13 N -0.599 5.599 14 C 0.090 3.910 15 C -0.131 4.131 16 C -0.116 4.116 17 C -0.129 4.129 18 C 0.160 3.840 19 H 0.083 0.917 20 C -0.098 4.098 21 C 0.149 3.851 22 N -0.750 5.750 23 C -0.248 4.248 24 H 0.081 0.919 25 C -0.084 4.084 26 N -0.975 5.975 27 Si 0.983 3.017 28 H -0.284 1.284 29 H -0.294 1.294 30 H -0.264 1.264 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.052 0.948 34 H 0.173 0.827 35 H 0.182 0.818 36 H 0.185 0.815 37 H 0.148 0.852 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.052 0.948 46 H 0.038 0.962 47 H 0.061 0.939 48 H 0.026 0.974 49 H 0.020 0.980 50 H 0.368 0.632 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.150 32.152 8.142 36.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.009 3.991 3 H 0.147 0.853 4 O -0.223 6.223 5 C 0.019 3.981 6 C -0.190 4.190 7 C -0.135 4.135 8 C -0.112 4.112 9 N -0.185 5.185 10 C -0.112 4.112 11 C 0.289 3.711 12 O -0.434 6.434 13 N -0.333 5.333 14 C -0.031 4.031 15 C -0.169 4.169 16 C -0.153 4.153 17 C -0.168 4.168 18 C 0.056 3.944 19 H 0.101 0.899 20 C -0.136 4.136 21 C 0.023 3.977 22 N -0.392 5.392 23 C -0.380 4.380 24 H 0.098 0.902 25 C -0.276 4.276 26 N -0.626 5.626 27 Si 0.811 3.189 28 H -0.211 1.211 29 H -0.221 1.221 30 H -0.189 1.189 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.071 0.929 34 H 0.191 0.809 35 H 0.199 0.801 36 H 0.202 0.798 37 H 0.165 0.835 38 H 0.129 0.871 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.129 0.871 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.057 0.943 47 H 0.080 0.920 48 H 0.044 0.956 49 H 0.038 0.962 50 H 0.199 0.801 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.433 30.960 8.694 34.850 hybrid contribution 0.322 -1.337 -0.848 1.616 sum -13.111 29.622 7.846 33.331 Atomic orbital electron populations 1.22451 0.90338 1.04118 1.06133 1.22462 0.97256 0.97308 0.82062 0.85286 1.86260 1.81361 1.38138 1.16583 1.20366 0.97608 0.92604 0.87497 1.22139 1.02672 0.92400 1.01791 1.22457 0.96900 1.02614 0.91569 1.23326 0.96609 0.90500 1.00759 1.67729 1.15999 1.09115 1.25610 1.22200 1.00478 1.01138 0.87373 1.20793 0.79264 0.85741 0.85348 1.90896 1.42644 1.23697 1.86167 1.48141 1.62866 1.18324 1.04006 1.22340 0.96961 0.81059 1.02711 1.21966 0.96882 1.03274 0.94803 1.21535 1.01856 0.93758 0.98187 1.22017 0.96522 0.99353 0.98874 1.21160 0.97681 0.90725 0.84805 0.89923 1.21958 1.01387 0.94545 0.95720 1.20963 0.95634 0.85356 0.95784 1.42670 1.77158 1.13500 1.05906 1.19720 1.33775 0.94994 0.89510 0.90160 1.25765 1.03175 0.99990 0.98632 1.69889 1.54076 1.21139 1.17455 0.85001 0.78103 0.77546 0.78257 1.21122 1.22075 1.18871 0.88212 0.87387 0.92898 0.80950 0.80093 0.79808 0.83479 0.87133 0.88986 0.91608 0.87143 0.90401 0.90631 0.90813 0.92887 0.94301 0.92023 0.95640 0.96210 0.80080 0.93999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 8.80 71.98 0.63 -1.60 16 2 C 0.07 1.30 1.79 29.85 0.05 1.36 16 3 H 0.13 1.40 5.39 -2.39 -0.01 1.39 16 4 O -0.31 -8.42 9.36 -73.68 -0.69 -9.11 16 5 C 0.07 1.47 6.62 22.60 0.15 1.62 16 6 C -0.16 -2.07 8.40 22.56 0.19 -1.88 16 7 C -0.12 -1.12 10.11 22.35 0.23 -0.89 16 8 C 0.05 0.66 11.18 84.70 0.95 1.61 16 9 N -0.48 -10.92 10.35 -195.43 -2.02 -12.94 16 10 C 0.05 1.14 11.14 84.80 0.94 2.08 16 11 C 0.50 14.15 6.89 87.66 0.60 14.75 16 12 O -0.56 -23.27 12.07 15.85 0.19 -23.08 16 13 N -0.60 -12.91 2.97 -795.03 -2.36 -15.27 16 14 C 0.09 0.84 5.48 86.36 0.47 1.32 16 15 C -0.13 -1.01 5.93 30.67 0.18 -0.82 16 16 C -0.12 -1.44 5.88 30.63 0.18 -1.26 16 17 C -0.13 -2.83 4.85 30.68 0.15 -2.68 16 18 C 0.16 4.30 3.02 44.97 0.14 4.43 16 19 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 20 C -0.10 -3.94 3.28 30.59 0.10 -3.84 16 21 C 0.15 6.77 5.75 86.38 0.50 7.26 16 22 N -0.75 -43.80 5.60 -343.47 -1.92 -45.72 16 23 C -0.25 -15.16 9.99 84.03 0.84 -14.32 16 24 H 0.08 4.60 7.83 -2.91 -0.02 4.57 16 25 C -0.08 -5.23 5.50 84.86 0.47 -4.76 16 26 N -0.97 -65.32 13.06 21.65 0.28 -65.04 16 27 Si 0.98 48.99 29.55 68.60 2.03 51.01 16 28 H -0.28 -13.79 7.11 99.48 0.71 -13.09 16 29 H -0.29 -14.66 7.11 99.48 0.71 -13.96 16 30 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 31 H 0.10 0.76 6.92 -2.39 -0.02 0.75 16 32 H 0.11 0.84 5.34 -2.38 -0.01 0.83 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.17 0.88 5.53 -2.91 -0.02 0.87 16 35 H 0.18 0.17 8.06 -2.91 -0.02 0.15 16 36 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 38 H 0.11 0.40 4.66 -2.38 -0.01 0.39 16 39 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.07 0.59 7.49 -2.39 -0.02 0.57 16 41 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.07 1.75 6.88 -2.39 -0.02 1.73 16 45 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.04 1.74 7.30 -2.39 -0.02 1.72 16 47 H 0.06 2.91 6.16 -2.39 -0.01 2.90 16 48 H 0.03 1.11 6.86 -2.39 -0.02 1.09 16 49 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.37 23.63 7.67 -92.71 -0.71 22.92 16 51 H 0.25 16.16 8.31 -92.71 -0.77 15.39 16 Total: -1.00 -90.59 394.58 2.51 -88.08 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.24 Total: 29.69 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 6.77 Total: 2.39 kcal Atomic # 7 Polarization: -132.95 SS G_CDS: -6.03 Total: -138.98 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.50 Total: -32.19 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.03 Total: 51.01 kcal Total: -90.59 2.51 -88.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268161614.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.967 kcal (2) G-P(sol) polarization free energy of solvation -90.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds