Wall clock time and date at job start Wed Apr 1 2020 04:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47143 * 2 1 4 4 C 1.47199 * 109.46818 * 120.00217 * 2 1 3 5 5 N 2.60805 * 109.46975 * 120.00274 * 2 1 3 6 6 C 1.50706 * 109.46883 * 239.99865 * 2 1 3 7 7 O 1.21276 * 119.99829 * 257.72394 * 6 2 1 8 8 N 1.34773 * 119.99459 * 77.72599 * 6 2 1 9 9 C 1.46931 * 120.63622 * 185.12958 * 8 6 2 10 10 C 1.52732 * 109.02312 * 233.65337 * 9 8 6 11 11 C 1.52949 * 109.43407 * 305.71639 * 10 9 8 12 12 C 1.53253 * 109.47935 * 300.83564 * 11 10 9 13 13 C 1.53076 * 108.45703 * 172.82260 * 12 11 10 14 14 C 1.50173 * 109.90608 * 48.80460 * 13 12 11 15 15 O 1.21279 * 118.22972 * 162.32259 * 14 13 12 16 16 N 1.33348 * 123.52899 * 342.34289 * 14 13 12 17 17 C 1.46504 * 117.95010 * 182.30762 * 16 14 13 18 18 C 1.53004 * 109.47070 * 90.00232 * 17 16 14 19 19 C 1.50695 * 109.47215 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99940 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00261 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00010 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00272 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46793 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47049 * 119.99904 * 23 21 19 26 26 H 1.48501 * 109.46931 * 240.00481 * 23 21 19 27 27 C 1.45754 * 124.09274 * 2.30840 * 16 14 13 28 28 C 1.52951 * 109.70954 * 60.99256 * 11 10 9 29 29 C 1.46928 * 120.64586 * 5.40791 * 8 6 2 30 30 H 1.08997 * 109.47014 * 53.96359 * 1 2 3 31 31 H 1.08995 * 109.47170 * 173.96646 * 1 2 3 32 32 H 1.09003 * 109.47204 * 293.97071 * 1 2 3 33 33 H 1.09000 * 109.59281 * 353.49233 * 9 8 6 34 34 H 1.09006 * 109.58884 * 113.92138 * 9 8 6 35 35 H 1.09002 * 109.56426 * 185.65926 * 10 9 8 36 36 H 1.09000 * 109.33774 * 65.63722 * 10 9 8 37 37 H 1.08999 * 109.63705 * 292.51105 * 12 11 10 38 38 H 1.09001 * 109.63395 * 53.12886 * 12 11 10 39 39 H 1.09000 * 109.39831 * 168.94186 * 13 12 11 40 40 H 1.08998 * 109.39586 * 288.75919 * 13 12 11 41 41 H 1.08995 * 109.47319 * 209.99989 * 17 16 14 42 42 H 1.08998 * 109.47333 * 330.00264 * 17 16 14 43 43 H 1.09005 * 109.46862 * 299.99920 * 18 17 16 44 44 H 1.08998 * 109.47017 * 59.99838 * 18 17 16 45 45 H 0.97001 * 120.00295 * 180.02562 * 22 21 19 46 46 H 1.09007 * 109.26772 * 220.73897 * 27 16 14 47 47 H 1.09001 * 109.26962 * 101.27649 * 27 16 14 48 48 H 1.09001 * 109.49144 * 178.90158 * 28 11 10 49 49 H 1.08998 * 109.51083 * 58.84684 * 28 11 10 50 50 H 1.09004 * 109.59261 * 246.07791 * 29 8 6 51 51 H 1.09005 * 109.59026 * 6.36527 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6940 1.2019 5 7 2.3993 -1.2296 2.1294 6 6 2.0323 -0.7105 -1.2305 7 8 2.4450 -1.8479 -1.1480 8 7 2.0229 -0.0817 -2.4226 9 6 2.4032 -0.7961 -3.6489 10 6 3.5015 -0.0105 -4.3624 11 6 3.0325 1.4274 -4.5905 12 6 1.7541 1.4200 -5.4356 13 6 1.2064 2.8480 -5.4984 14 6 2.3067 3.8019 -5.8652 15 8 1.9999 4.9017 -6.2741 16 7 3.6029 3.5046 -5.7659 17 6 4.5745 4.5461 -6.1086 18 6 4.9115 5.3606 -4.8580 19 6 5.9105 6.4324 -5.2106 20 1 6.2695 6.5232 -6.2252 21 6 6.3662 7.2970 -4.2381 22 7 5.9294 7.1861 -3.0026 23 14 7.6051 8.6251 -4.6751 24 1 7.9355 8.5375 -6.1202 25 1 7.0250 9.9597 -4.3795 26 1 8.8400 8.4332 -3.8730 27 6 4.1132 2.2082 -5.3377 28 6 2.7504 2.0975 -3.2448 29 6 1.6381 1.3329 -2.5201 30 1 -0.3633 0.6046 -0.8310 31 1 -0.3633 -1.0219 -0.1080 32 1 -0.3634 0.4175 0.9390 33 1 2.7733 -1.7891 -3.3936 34 1 1.5366 -0.8842 -4.3042 35 1 3.7201 -0.4783 -5.3224 36 1 4.4007 -0.0063 -3.7464 37 1 1.9826 1.0706 -6.4424 38 1 1.0149 0.7639 -4.9758 39 1 0.4170 2.9003 -6.2482 40 1 0.8000 3.1230 -4.5252 41 1 5.4820 4.0831 -6.4961 42 1 4.1499 5.2038 -6.8670 43 1 4.0039 5.8237 -4.4706 44 1 5.3361 4.7030 -4.0996 45 1 6.2497 7.7946 -2.3184 46 1 4.9689 2.3582 -4.6792 47 1 4.4286 1.6391 -6.2122 48 1 2.4353 3.1277 -3.4105 49 1 3.6547 2.0873 -2.6364 50 1 0.7083 1.4208 -3.0821 51 1 1.5009 1.7442 -1.5200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269265610.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:49 Heat of formation + Delta-G solvation = -48.792521 kcal Electronic energy + Delta-G solvation = -31926.674124 eV Core-core repulsion = 27825.711541 eV Total energy + Delta-G solvation = -4100.962583 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47040 -40.21146 -38.30273 -36.82987 -35.72076 -34.65961 -33.79454 -32.77714 -31.79822 -30.90391 -29.73269 -27.68804 -25.77242 -25.26108 -24.05229 -23.82696 -23.59684 -21.52315 -20.81406 -19.18710 -18.25442 -17.93634 -17.38200 -16.65880 -16.32164 -16.14680 -15.86328 -15.57647 -15.34922 -14.78535 -14.70302 -14.48610 -14.38524 -14.29428 -13.79101 -13.64134 -13.33971 -13.08800 -13.00136 -12.83612 -12.76708 -12.70289 -12.60601 -12.31705 -12.25396 -12.18397 -11.96691 -11.83743 -11.47338 -11.33312 -11.29238 -11.04718 -10.95609 -10.72841 -10.59007 -10.58527 -10.12916 -9.90168 -9.87216 -9.38700 -9.11085 -8.95363 -8.38615 -8.05435 -6.04385 -4.06615 2.04018 2.15432 2.48862 2.78556 3.07781 3.29345 3.36640 3.40036 3.43856 3.47408 3.95289 4.23100 4.32069 4.38955 4.41420 4.44270 4.48742 4.68287 4.71878 4.74414 4.90305 5.00119 5.06513 5.14167 5.16751 5.21268 5.27976 5.32480 5.32888 5.44438 5.48003 5.52614 5.64629 5.65958 5.68766 5.73313 5.81179 5.89470 5.97240 6.08960 6.13869 6.21710 6.54530 6.81862 6.87272 6.88479 7.24059 7.59004 7.66427 7.70464 7.95903 8.01852 8.34209 8.65932 8.99970 9.57447 11.07061 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011236 B = 0.002903 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.384739 B = 9643.114161 C =11042.054962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.016 4.016 3 H 0.140 0.860 4 C 0.221 3.779 5 N -0.412 5.412 6 C 0.528 3.472 7 O -0.530 6.530 8 N -0.602 5.602 9 C 0.113 3.887 10 C -0.121 4.121 11 C -0.071 4.071 12 C -0.116 4.116 13 C -0.135 4.135 14 C 0.508 3.492 15 O -0.552 6.552 16 N -0.596 5.596 17 C 0.109 3.891 18 C 0.018 3.982 19 C -0.519 4.519 20 H 0.056 0.944 21 C 0.059 3.941 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.125 3.875 28 C -0.131 4.131 29 C 0.099 3.901 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.020 0.980 44 H 0.014 0.986 45 H 0.260 0.740 46 H 0.080 0.920 47 H 0.062 0.938 48 H 0.088 0.912 49 H 0.077 0.923 50 H 0.080 0.920 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.226 -17.000 -0.526 21.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.040 4.040 3 H 0.157 0.843 4 C -0.098 4.098 5 N -0.087 5.087 6 C 0.313 3.687 7 O -0.406 6.406 8 N -0.335 5.335 9 C -0.009 4.009 10 C -0.159 4.159 11 C -0.071 4.071 12 C -0.153 4.153 13 C -0.175 4.175 14 C 0.295 3.705 15 O -0.431 6.431 16 N -0.328 5.328 17 C -0.012 4.012 18 C -0.020 4.020 19 C -0.558 4.558 20 H 0.075 0.925 21 C -0.142 4.142 22 N -0.533 5.533 23 Si 0.720 3.280 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 C 0.002 3.998 28 C -0.169 4.169 29 C -0.023 4.023 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.039 0.961 44 H 0.032 0.968 45 H 0.069 0.931 46 H 0.098 0.902 47 H 0.080 0.920 48 H 0.106 0.894 49 H 0.096 0.904 50 H 0.098 0.902 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.574 -17.789 0.867 21.801 hybrid contribution 0.746 1.135 -0.457 1.433 sum -11.827 -16.654 0.410 20.431 Atomic orbital electron populations 1.21785 0.89152 1.04399 1.04662 1.18916 0.99160 1.00267 0.85686 0.84269 1.28088 0.93920 0.93823 0.94003 1.81204 1.07635 1.07964 1.11898 1.19931 0.78341 0.86528 0.83859 1.90770 1.46265 1.18406 1.85207 1.48015 1.66882 1.11931 1.06709 1.21595 0.98006 0.96731 0.84586 1.21801 0.98821 0.93958 1.01369 1.20765 0.95811 0.95211 0.95333 1.21824 0.96682 0.96342 1.00472 1.21699 0.97514 0.94098 1.04184 1.19925 0.83627 0.88352 0.78561 1.90736 1.82252 1.23527 1.46588 1.47454 1.06336 1.13591 1.65394 1.21917 0.89358 0.88879 1.01040 1.19320 0.96823 0.94194 0.91690 1.21136 1.24530 1.14756 0.95357 0.92549 1.24979 0.96669 0.97588 0.94997 1.69968 1.43954 1.38051 1.01293 0.86528 0.81061 0.81811 0.78558 1.19692 1.20966 1.21041 1.21350 0.96424 0.83684 0.98375 1.22043 0.99509 0.99963 0.95340 1.22032 0.98472 0.79592 1.02201 0.89642 0.90932 0.90082 0.88709 0.90721 0.89974 0.90670 0.90960 0.90489 0.88732 0.88559 0.92083 0.90581 0.96133 0.96781 0.93068 0.90210 0.92024 0.89399 0.90386 0.90187 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.55 9.00 37.16 0.33 -0.21 16 2 C -0.02 -0.10 2.25 -94.56 -0.21 -0.32 16 3 H 0.14 0.55 6.44 -51.93 -0.33 0.22 16 4 C 0.22 2.33 13.95 -20.76 -0.29 2.04 16 5 N -0.41 -5.61 18.54 42.16 0.78 -4.83 16 6 C 0.53 4.68 6.85 -10.98 -0.08 4.60 16 7 O -0.53 -6.96 15.56 5.56 0.09 -6.87 16 8 N -0.60 -4.14 2.98 -173.03 -0.52 -4.66 16 9 C 0.11 0.74 5.95 -3.94 -0.02 0.72 16 10 C -0.12 -0.82 4.88 -26.90 -0.13 -0.95 16 11 C -0.07 -0.58 0.52 -154.51 -0.08 -0.66 16 12 C -0.12 -0.83 4.18 -26.56 -0.11 -0.94 16 13 C -0.14 -1.37 5.36 -28.10 -0.15 -1.52 16 14 C 0.51 8.20 6.65 -11.87 -0.08 8.12 16 15 O -0.55 -11.82 16.18 5.56 0.09 -11.73 16 16 N -0.60 -9.46 2.68 -175.01 -0.47 -9.93 16 17 C 0.11 2.20 5.16 -4.04 -0.02 2.18 16 18 C 0.02 0.44 5.29 -27.88 -0.15 0.29 16 19 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 20 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 23 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 C 0.13 1.45 5.00 -4.53 -0.02 1.43 16 28 C -0.13 -1.14 4.29 -26.65 -0.11 -1.25 16 29 C 0.10 0.55 5.09 -3.70 -0.02 0.53 16 30 H 0.08 0.17 7.28 -51.93 -0.38 -0.21 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.24 8.13 -51.93 -0.42 -0.18 16 33 H 0.09 0.76 7.00 -51.93 -0.36 0.40 16 34 H 0.07 0.37 6.56 -51.93 -0.34 0.03 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.52 8.13 -51.93 -0.42 0.09 16 38 H 0.08 0.39 5.08 -51.93 -0.26 0.13 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 0.85 6.35 -51.93 -0.33 0.52 16 41 H 0.06 1.13 8.01 -51.93 -0.42 0.72 16 42 H 0.08 1.69 7.13 -51.93 -0.37 1.32 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.08 1.02 8.08 -51.92 -0.42 0.60 16 47 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 48 H 0.09 0.97 5.84 -51.93 -0.30 0.67 16 49 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.08 0.33 6.30 -51.93 -0.33 0.00 16 51 H 0.09 0.34 5.27 -51.93 -0.27 0.07 16 LS Contribution 395.83 15.07 5.97 5.97 Total: -1.00 -37.58 395.83 -7.79 -45.37 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -7.89 Total: -5.09 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -1.55 Total: 0.91 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.53 Total: -44.96 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.18 Total: -18.60 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.58 -7.79 -45.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269265610.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.423 kcal (2) G-P(sol) polarization free energy of solvation -37.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds