Wall clock time and date at job start Wed Apr 1 2020 04:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47143 * 2 1 4 4 C 1.47199 * 109.46818 * 120.00217 * 2 1 3 5 5 N 2.60805 * 109.46975 * 120.00274 * 2 1 3 6 6 C 1.50706 * 109.46883 * 239.99865 * 2 1 3 7 7 O 1.21276 * 119.99829 * 257.72394 * 6 2 1 8 8 N 1.34773 * 119.99459 * 77.72599 * 6 2 1 9 9 C 1.46931 * 120.63622 * 185.12958 * 8 6 2 10 10 C 1.52732 * 109.02312 * 233.65337 * 9 8 6 11 11 C 1.52949 * 109.43407 * 305.71639 * 10 9 8 12 12 C 1.53253 * 109.47935 * 300.83564 * 11 10 9 13 13 C 1.53076 * 108.45703 * 172.82260 * 12 11 10 14 14 C 1.50173 * 109.90608 * 48.80460 * 13 12 11 15 15 O 1.21279 * 118.22972 * 162.32259 * 14 13 12 16 16 N 1.33348 * 123.52899 * 342.34289 * 14 13 12 17 17 C 1.46504 * 117.95010 * 182.30762 * 16 14 13 18 18 C 1.53004 * 109.47070 * 90.00232 * 17 16 14 19 19 C 1.50695 * 109.47215 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99940 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00261 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00010 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00272 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46793 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47049 * 119.99904 * 23 21 19 26 26 H 1.48501 * 109.46931 * 240.00481 * 23 21 19 27 27 C 1.45754 * 124.09274 * 2.30840 * 16 14 13 28 28 C 1.52951 * 109.70954 * 60.99256 * 11 10 9 29 29 C 1.46928 * 120.64586 * 5.40791 * 8 6 2 30 30 H 1.08997 * 109.47014 * 53.96359 * 1 2 3 31 31 H 1.08995 * 109.47170 * 173.96646 * 1 2 3 32 32 H 1.09003 * 109.47204 * 293.97071 * 1 2 3 33 33 H 1.09000 * 109.59281 * 353.49233 * 9 8 6 34 34 H 1.09006 * 109.58884 * 113.92138 * 9 8 6 35 35 H 1.09002 * 109.56426 * 185.65926 * 10 9 8 36 36 H 1.09000 * 109.33774 * 65.63722 * 10 9 8 37 37 H 1.08999 * 109.63705 * 292.51105 * 12 11 10 38 38 H 1.09001 * 109.63395 * 53.12886 * 12 11 10 39 39 H 1.09000 * 109.39831 * 168.94186 * 13 12 11 40 40 H 1.08998 * 109.39586 * 288.75919 * 13 12 11 41 41 H 1.08995 * 109.47319 * 209.99989 * 17 16 14 42 42 H 1.08998 * 109.47333 * 330.00264 * 17 16 14 43 43 H 1.09005 * 109.46862 * 299.99920 * 18 17 16 44 44 H 1.08998 * 109.47017 * 59.99838 * 18 17 16 45 45 H 0.97001 * 120.00295 * 180.02562 * 22 21 19 46 46 H 1.09007 * 109.26772 * 220.73897 * 27 16 14 47 47 H 1.09001 * 109.26962 * 101.27649 * 27 16 14 48 48 H 1.09001 * 109.49144 * 178.90158 * 28 11 10 49 49 H 1.08998 * 109.51083 * 58.84684 * 28 11 10 50 50 H 1.09004 * 109.59261 * 246.07791 * 29 8 6 51 51 H 1.09005 * 109.59026 * 6.36527 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6940 1.2019 5 7 2.3993 -1.2296 2.1294 6 6 2.0323 -0.7105 -1.2305 7 8 2.4450 -1.8479 -1.1480 8 7 2.0229 -0.0817 -2.4226 9 6 2.4032 -0.7961 -3.6489 10 6 3.5015 -0.0105 -4.3624 11 6 3.0325 1.4274 -4.5905 12 6 1.7541 1.4200 -5.4356 13 6 1.2064 2.8480 -5.4984 14 6 2.3067 3.8019 -5.8652 15 8 1.9999 4.9017 -6.2741 16 7 3.6029 3.5046 -5.7659 17 6 4.5745 4.5461 -6.1086 18 6 4.9115 5.3606 -4.8580 19 6 5.9105 6.4324 -5.2106 20 1 6.2695 6.5232 -6.2252 21 6 6.3662 7.2970 -4.2381 22 7 5.9294 7.1861 -3.0026 23 14 7.6051 8.6251 -4.6751 24 1 7.9355 8.5375 -6.1202 25 1 7.0250 9.9597 -4.3795 26 1 8.8400 8.4332 -3.8730 27 6 4.1132 2.2082 -5.3377 28 6 2.7504 2.0975 -3.2448 29 6 1.6381 1.3329 -2.5201 30 1 -0.3633 0.6046 -0.8310 31 1 -0.3633 -1.0219 -0.1080 32 1 -0.3634 0.4175 0.9390 33 1 2.7733 -1.7891 -3.3936 34 1 1.5366 -0.8842 -4.3042 35 1 3.7201 -0.4783 -5.3224 36 1 4.4007 -0.0063 -3.7464 37 1 1.9826 1.0706 -6.4424 38 1 1.0149 0.7639 -4.9758 39 1 0.4170 2.9003 -6.2482 40 1 0.8000 3.1230 -4.5252 41 1 5.4820 4.0831 -6.4961 42 1 4.1499 5.2038 -6.8670 43 1 4.0039 5.8237 -4.4706 44 1 5.3361 4.7030 -4.0996 45 1 6.2497 7.7946 -2.3184 46 1 4.9689 2.3582 -4.6792 47 1 4.4286 1.6391 -6.2122 48 1 2.4353 3.1277 -3.4105 49 1 3.6547 2.0873 -2.6364 50 1 0.7083 1.4208 -3.0821 51 1 1.5009 1.7442 -1.5200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269265610.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:48 Heat of formation + Delta-G solvation = -74.116031 kcal Electronic energy + Delta-G solvation = -31927.772233 eV Core-core repulsion = 27825.711541 eV Total energy + Delta-G solvation = -4102.060692 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.27295 -41.13021 -39.27749 -37.69355 -36.92031 -35.88344 -34.80488 -34.25345 -32.47031 -31.68711 -31.41128 -28.61706 -26.89833 -26.23776 -25.17018 -24.58868 -24.23130 -23.12108 -21.73292 -20.17504 -19.02093 -18.62492 -18.57115 -18.09727 -17.48564 -17.16185 -16.84025 -16.64371 -16.28794 -16.16864 -15.55981 -15.37602 -15.23766 -15.11384 -14.65218 -14.53798 -14.41099 -14.34919 -14.15313 -14.07850 -13.74840 -13.54609 -13.43106 -13.24880 -13.19533 -12.92203 -12.87378 -12.77736 -12.69313 -12.56315 -12.40981 -12.09077 -12.02551 -11.97040 -11.85863 -11.69986 -11.39559 -11.28163 -11.22901 -10.77932 -10.57887 -10.50017 -9.62263 -9.47556 -8.22375 -6.33323 1.34726 1.38617 1.39767 1.49360 1.52445 1.69573 1.81825 2.12502 2.21857 2.42576 2.79034 3.11366 3.38013 3.58115 3.59997 3.72220 3.82548 3.94872 4.01564 4.14510 4.17309 4.34658 4.36691 4.42737 4.49241 4.55323 4.57950 4.67538 4.74877 4.80584 4.84440 4.85570 4.87171 4.91704 4.96865 4.99342 5.00981 5.07244 5.17172 5.22279 5.28931 5.34051 5.36664 5.49440 5.52604 5.59270 5.63538 5.84790 6.20290 6.27097 6.47486 6.72576 6.81982 7.03517 7.35331 7.38934 8.89408 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011236 B = 0.002903 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.384739 B = 9643.114161 C =11042.054962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.014 4.014 3 H 0.170 0.830 4 C 0.241 3.759 5 N -0.476 5.476 6 C 0.527 3.473 7 O -0.580 6.580 8 N -0.593 5.593 9 C 0.112 3.888 10 C -0.112 4.112 11 C -0.063 4.063 12 C -0.105 4.105 13 C -0.124 4.124 14 C 0.498 3.502 15 O -0.615 6.615 16 N -0.595 5.595 17 C 0.123 3.877 18 C 0.034 3.966 19 C -0.544 4.544 20 H 0.060 0.940 21 C 0.004 3.996 22 N -0.928 5.928 23 Si 0.964 3.036 24 H -0.262 1.262 25 H -0.280 1.280 26 H -0.275 1.275 27 C 0.118 3.882 28 C -0.132 4.132 29 C 0.100 3.900 30 H 0.115 0.885 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.078 0.922 42 H 0.052 0.948 43 H -0.023 1.023 44 H -0.002 1.002 45 H 0.263 0.737 46 H 0.059 0.941 47 H 0.084 0.916 48 H 0.063 0.937 49 H 0.055 0.945 50 H 0.113 0.887 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.741 -17.862 -1.724 23.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.038 4.038 3 H 0.187 0.813 4 C -0.077 4.077 5 N -0.152 5.152 6 C 0.314 3.686 7 O -0.460 6.460 8 N -0.325 5.325 9 C -0.010 4.010 10 C -0.150 4.150 11 C -0.064 4.064 12 C -0.142 4.142 13 C -0.164 4.164 14 C 0.288 3.712 15 O -0.498 6.498 16 N -0.325 5.325 17 C 0.000 4.000 18 C -0.004 4.004 19 C -0.582 4.582 20 H 0.078 0.922 21 C -0.194 4.194 22 N -0.568 5.568 23 Si 0.788 3.212 24 H -0.186 1.186 25 H -0.206 1.206 26 H -0.200 1.200 27 C -0.004 4.004 28 C -0.170 4.170 29 C -0.021 4.021 30 H 0.133 0.867 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.096 0.904 42 H 0.070 0.930 43 H -0.004 1.004 44 H 0.017 0.983 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.102 0.898 48 H 0.081 0.919 49 H 0.074 0.926 50 H 0.131 0.869 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.091 -18.677 -0.345 23.399 hybrid contribution 1.266 1.456 -0.115 1.933 sum -12.825 -17.220 -0.460 21.477 Atomic orbital electron populations 1.21873 0.86546 1.04630 1.06573 1.19270 1.01061 1.00671 0.82830 0.81290 1.28911 0.92280 0.92524 0.94012 1.81208 1.09821 1.10036 1.14172 1.20247 0.77638 0.85984 0.84761 1.90761 1.48654 1.20672 1.85921 1.48053 1.65826 1.12267 1.06343 1.21693 0.98893 0.95768 0.84636 1.21729 0.98278 0.92806 1.02201 1.20730 0.95487 0.95343 0.94798 1.21849 0.96362 0.94792 1.01216 1.21735 0.95193 0.94128 1.05324 1.21168 0.84483 0.88619 0.76920 1.90703 1.83159 1.26575 1.49405 1.47484 1.05955 1.14034 1.65053 1.21413 0.91038 0.89651 0.97896 1.19071 0.94198 0.93879 0.93250 1.21585 1.25180 1.15767 0.95668 0.92202 1.25916 0.98672 1.00013 0.94842 1.70090 1.45242 1.39135 1.02353 0.85420 0.78500 0.78439 0.78829 1.18616 1.20631 1.20036 1.21642 0.97198 0.82179 0.99384 1.21991 0.99888 0.99269 0.95848 1.22208 0.98065 0.78133 1.03694 0.86657 0.91836 0.88994 0.90199 0.87661 0.87937 0.92478 0.89829 0.86713 0.87249 0.86779 0.90385 0.92953 1.00416 0.98319 0.92781 0.92224 0.89757 0.91879 0.92614 0.86940 0.87016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.59 9.00 71.98 0.65 0.06 16 2 C -0.01 -0.15 2.25 -13.34 -0.03 -0.18 16 3 H 0.17 0.78 6.44 -2.39 -0.02 0.76 16 4 C 0.24 4.97 13.95 89.44 1.25 6.22 16 5 N -0.48 -13.29 18.54 20.01 0.37 -12.92 16 6 C 0.53 8.25 6.85 87.66 0.60 8.85 16 7 O -0.58 -14.89 15.56 -3.02 -0.05 -14.94 16 8 N -0.59 -6.20 2.98 -819.74 -2.44 -8.64 16 9 C 0.11 1.07 5.95 86.21 0.51 1.58 16 10 C -0.11 -1.19 4.88 30.49 0.15 -1.05 16 11 C -0.06 -0.88 0.52 -52.18 -0.03 -0.91 16 12 C -0.11 -1.02 4.18 30.70 0.13 -0.90 16 13 C -0.12 -2.14 5.36 29.71 0.16 -1.98 16 14 C 0.50 15.99 6.65 87.71 0.58 16.57 16 15 O -0.62 -27.26 16.18 -3.03 -0.05 -27.31 16 16 N -0.60 -19.07 2.68 -826.79 -2.21 -21.28 16 17 C 0.12 5.15 5.16 86.38 0.45 5.60 16 18 C 0.03 1.79 5.29 29.85 0.16 1.95 16 19 C -0.54 -31.07 9.11 25.60 0.23 -30.83 16 20 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 21 C 0.00 0.22 5.46 84.65 0.46 0.68 16 22 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 23 Si 0.96 44.35 29.54 68.60 2.03 46.37 16 24 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 26 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 27 C 0.12 2.63 5.00 86.47 0.43 3.06 16 28 C -0.13 -2.07 4.29 30.65 0.13 -1.94 16 29 C 0.10 0.71 5.09 86.37 0.44 1.15 16 30 H 0.11 -0.16 7.28 -2.39 -0.02 -0.18 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.09 0.25 8.13 -2.39 -0.02 0.23 16 33 H 0.08 1.11 7.00 -2.39 -0.02 1.09 16 34 H 0.11 0.43 6.56 -2.38 -0.02 0.42 16 35 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.75 8.13 -2.39 -0.02 0.73 16 38 H 0.11 0.37 5.08 -2.39 -0.01 0.36 16 39 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.11 1.61 6.35 -2.39 -0.02 1.59 16 41 H 0.08 2.95 8.01 -2.39 -0.02 2.94 16 42 H 0.05 2.44 7.13 -2.39 -0.02 2.42 16 43 H -0.02 -1.37 8.14 -2.38 -0.02 -1.39 16 44 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 46 H 0.06 1.57 8.08 -2.38 -0.02 1.55 16 47 H 0.08 1.51 8.11 -2.39 -0.02 1.50 16 48 H 0.06 1.35 5.84 -2.39 -0.01 1.33 16 49 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.11 0.20 6.30 -2.38 -0.02 0.18 16 51 H 0.11 0.35 5.27 -2.38 -0.01 0.34 16 Total: -1.00 -90.12 395.83 5.15 -84.97 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: 0.94 Total: 1.53 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 6.27 Total: 7.95 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -4.00 Total: -98.58 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -0.10 Total: -42.24 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -90.12 5.15 -84.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269265610.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.856 kcal (2) G-P(sol) polarization free energy of solvation -90.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds