Wall clock time and date at job start Wed Apr 1 2020 04:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47366 * 2 1 4 4 C 1.47197 * 109.47051 * 239.99564 * 2 1 3 5 5 N 2.60800 * 109.47166 * 239.99594 * 2 1 3 6 6 C 1.50702 * 109.46997 * 120.00002 * 2 1 3 7 7 O 1.21277 * 120.00288 * 108.44627 * 6 2 1 8 8 N 1.34606 * 119.99629 * 288.45236 * 6 2 1 9 9 C 1.43215 * 121.39419 * 354.57152 * 8 6 2 10 10 C 1.54756 * 116.98679 * 254.40828 * 9 8 6 11 11 C 1.54398 * 111.37246 * 354.98694 * 10 9 8 12 12 C 1.48163 * 114.50205 * 292.27673 * 11 10 9 13 13 C 1.55108 * 110.61173 * 210.87539 * 12 11 10 14 14 C 1.54760 * 101.15240 * 151.19321 * 13 12 11 15 15 N 1.46887 * 104.73824 * 331.06477 * 14 13 12 16 16 C 1.46604 * 124.41681 * 198.74402 * 15 14 13 17 17 C 1.53000 * 109.46790 * 270.40576 * 16 15 14 18 18 C 1.50702 * 109.47011 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00016 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00183 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99820 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46582 * 60.00519 * 22 20 18 24 24 H 1.48494 * 109.46895 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47127 * 300.00219 * 22 20 18 26 26 C 1.34754 * 111.10048 * 19.07993 * 15 14 13 27 27 O 1.21186 * 123.94328 * 178.67315 * 26 15 14 28 28 C 1.51656 * 109.03588 * 90.74564 * 12 11 10 29 29 C 1.45132 * 117.01402 * 290.08876 * 28 12 11 30 30 H 1.08996 * 109.47475 * 178.76062 * 1 2 3 31 31 H 1.09000 * 109.47282 * 298.76449 * 1 2 3 32 32 H 1.09004 * 109.46843 * 58.75955 * 1 2 3 33 33 H 1.08793 * 108.34538 * 17.46567 * 9 8 6 34 34 H 1.09339 * 107.49461 * 133.36392 * 9 8 6 35 35 H 1.08810 * 110.27790 * 232.04703 * 10 9 8 36 36 H 1.09824 * 108.60325 * 114.68236 * 10 9 8 37 37 H 1.10222 * 108.47930 * 170.51099 * 11 10 9 38 38 H 1.09698 * 109.15472 * 55.07616 * 11 10 9 39 39 H 1.08610 * 110.60295 * 269.35175 * 13 12 11 40 40 H 1.08877 * 110.50952 * 33.35829 * 13 12 11 41 41 H 1.08903 * 110.45623 * 212.29698 * 14 13 12 42 42 H 1.09010 * 110.22652 * 89.71693 * 14 13 12 43 43 H 1.08996 * 109.47085 * 30.40274 * 16 15 14 44 44 H 1.08994 * 109.46891 * 150.40939 * 16 15 14 45 45 H 1.09000 * 109.46784 * 300.00129 * 17 16 15 46 46 H 1.09006 * 109.47005 * 60.00076 * 17 16 15 47 47 H 0.96997 * 120.00139 * 179.97438 * 21 20 18 48 48 H 1.09828 * 108.01609 * 167.35848 * 28 12 11 49 49 H 1.09776 * 107.95141 * 52.76952 * 28 12 11 50 50 H 1.09041 * 110.59295 * 303.69734 * 29 28 12 51 51 H 1.09282 * 110.05469 * 183.02905 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6940 -1.2018 5 7 2.3994 -1.2296 -2.1293 6 6 2.0324 -0.7104 1.2305 7 8 2.5478 -1.8037 1.1316 8 7 1.9088 -0.1315 2.4394 9 6 1.4108 1.2040 2.5796 10 6 2.4431 2.3066 2.9167 11 6 3.8450 1.7084 3.1634 12 6 3.9528 0.8797 4.3868 13 6 5.3833 0.9658 4.9803 14 6 5.0983 0.7330 6.4835 15 7 3.7376 1.2465 6.6897 16 6 3.1760 1.6040 7.9959 17 6 2.5046 0.3766 8.6154 18 6 1.9267 0.7441 9.9578 19 1 2.0284 1.7522 10.3318 20 6 1.2680 -0.2065 10.7084 21 7 1.1445 -1.4341 10.2532 22 14 0.5523 0.2489 12.3727 23 1 -0.4520 1.3292 12.2006 24 1 -0.0994 -0.9423 12.9739 25 1 1.6397 0.7216 13.2666 26 6 3.0717 1.3388 5.5218 27 8 1.9233 1.7134 5.4255 28 6 3.6437 -0.5629 4.0359 29 6 2.2686 -0.8784 3.6954 30 1 -0.3634 -1.0274 -0.0222 31 1 -0.3634 0.4945 0.9008 32 1 -0.3633 0.5330 -0.8787 33 1 0.8999 1.4774 1.6588 34 1 0.6651 1.1945 3.3791 35 1 2.1161 2.8770 3.7837 36 1 2.5011 3.0030 2.0695 37 1 4.5711 2.5352 3.2284 38 1 4.1385 1.1084 2.2933 39 1 6.0149 0.1830 4.5704 40 1 5.8087 1.9533 4.8088 41 1 5.8083 1.2871 7.0958 42 1 5.1401 -0.3315 6.7146 43 1 3.9741 1.9514 8.6518 44 1 2.4385 2.3965 7.8696 45 1 1.7065 0.0292 7.9593 46 1 3.2422 -0.4160 8.7416 47 1 0.6815 -2.1030 10.7814 48 1 3.9458 -1.1912 4.8845 49 1 4.2864 -0.8516 3.1940 50 1 1.5965 -0.5833 4.5017 51 1 2.1637 -1.9513 3.5160 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269265653.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:19 Heat of formation + Delta-G solvation = -35.908024 kcal Electronic energy + Delta-G solvation = -32279.963865 eV Core-core repulsion = 28179.559996 eV Total energy + Delta-G solvation = -4100.403869 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.48572 -40.14249 -37.31294 -36.61231 -36.23895 -34.87305 -33.72154 -33.03218 -32.42173 -30.81004 -28.69710 -27.49715 -25.78121 -25.54488 -24.83518 -23.11708 -22.25146 -21.94143 -20.34109 -19.80615 -18.45196 -17.78228 -17.24504 -16.66123 -16.36501 -16.12096 -15.75418 -15.45899 -14.94306 -14.74653 -14.58208 -14.45913 -14.16445 -13.94026 -13.66367 -13.49032 -13.24441 -13.04438 -12.96476 -12.85386 -12.66706 -12.57378 -12.50349 -12.32692 -12.12213 -12.02130 -11.86744 -11.67976 -11.47888 -11.32798 -11.13349 -11.03166 -10.95624 -10.76997 -10.66078 -10.39060 -10.02669 -9.90083 -9.86937 -9.34293 -9.00665 -8.83603 -8.41301 -8.04652 -6.06598 -4.10276 2.19595 2.24931 2.53923 2.91764 2.97542 3.29574 3.34272 3.35679 3.49731 3.50839 4.11980 4.23643 4.41483 4.42722 4.45522 4.51752 4.57609 4.70148 4.89285 4.97820 5.05309 5.14554 5.15398 5.20935 5.29711 5.31305 5.37768 5.51946 5.57023 5.63492 5.65360 5.71037 5.73259 5.80236 5.85857 5.88710 5.95418 6.02341 6.05865 6.11247 6.18737 6.40625 6.46335 6.75762 6.95393 7.19293 7.34272 7.47453 7.61881 7.80476 7.85558 7.92598 8.29023 8.62135 8.96208 9.54105 11.04619 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015971 B = 0.002717 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.728224 B =10302.817708 C =10961.373099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.014 4.014 3 H 0.137 0.863 4 C 0.224 3.776 5 N -0.416 5.416 6 C 0.526 3.474 7 O -0.532 6.532 8 N -0.593 5.593 9 C 0.097 3.903 10 C -0.132 4.132 11 C -0.093 4.093 12 C -0.081 4.081 13 C -0.125 4.125 14 C 0.100 3.900 15 N -0.612 5.612 16 C 0.129 3.871 17 C 0.014 3.986 18 C -0.524 4.524 19 H 0.056 0.944 20 C 0.060 3.940 21 N -0.892 5.892 22 Si 0.894 3.106 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.525 3.475 27 O -0.524 6.524 28 C -0.120 4.120 29 C 0.123 3.877 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.021 0.979 46 H 0.016 0.984 47 H 0.262 0.738 48 H 0.078 0.922 49 H 0.074 0.926 50 H 0.093 0.907 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.693 7.710 -17.527 19.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.039 4.039 3 H 0.154 0.846 4 C -0.095 4.095 5 N -0.091 5.091 6 C 0.311 3.689 7 O -0.409 6.409 8 N -0.325 5.325 9 C -0.028 4.028 10 C -0.170 4.170 11 C -0.131 4.131 12 C -0.084 4.084 13 C -0.163 4.163 14 C -0.023 4.023 15 N -0.345 5.345 16 C 0.009 3.991 17 C -0.024 4.024 18 C -0.563 4.563 19 H 0.074 0.926 20 C -0.142 4.142 21 N -0.531 5.531 22 Si 0.721 3.279 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.202 1.202 26 C 0.311 3.689 27 O -0.400 6.400 28 C -0.159 4.159 29 C 0.004 3.996 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.039 0.961 46 H 0.034 0.966 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.093 0.907 50 H 0.111 0.889 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.842 6.353 -18.891 20.510 hybrid contribution -0.353 0.374 1.520 1.605 sum 4.489 6.727 -17.371 19.161 Atomic orbital electron populations 1.21888 0.89360 1.04598 1.04657 1.18879 0.99054 1.00130 0.85802 0.84556 1.28123 0.93735 0.93745 0.93902 1.81186 1.07874 1.07926 1.12137 1.19845 0.79240 0.86066 0.83726 1.90770 1.43358 1.21000 1.85730 1.47971 1.64597 1.14296 1.05616 1.21327 0.96895 0.81582 1.02962 1.22622 0.94174 0.97188 1.03028 1.20894 0.97438 0.98844 0.95925 1.20075 0.96170 0.97024 0.95166 1.22983 0.95258 1.03212 0.94868 1.22112 0.84487 0.99998 0.95736 1.48734 1.14018 1.63703 1.08032 1.21810 0.97253 1.00283 0.79744 1.19380 0.95659 0.92038 0.95317 1.21042 1.36090 0.96492 1.02642 0.92593 1.24986 0.96025 0.94956 0.98196 1.69948 1.42540 1.02480 1.38118 0.86631 0.79402 0.77884 0.83937 1.20134 1.21256 1.20208 1.20345 0.86658 0.77454 0.84403 1.90587 1.16398 1.47809 1.85246 1.20330 0.98174 0.94357 1.03019 1.20865 0.96210 0.97467 0.85097 0.90853 0.89292 0.90198 0.90761 0.89770 0.88679 0.92337 0.92199 0.91743 0.89363 0.90038 0.90486 0.91062 0.91819 0.91114 0.96109 0.96598 0.92846 0.90372 0.90713 0.88894 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 8.79 37.16 0.33 -0.45 16 2 C -0.01 -0.10 2.24 -94.56 -0.21 -0.32 16 3 H 0.14 0.57 7.31 -51.93 -0.38 0.19 16 4 C 0.22 2.43 13.91 -20.76 -0.29 2.14 16 5 N -0.42 -5.68 18.54 42.15 0.78 -4.90 16 6 C 0.53 5.67 6.93 -11.06 -0.08 5.59 16 7 O -0.53 -7.96 15.79 5.56 0.09 -7.87 16 8 N -0.59 -6.06 2.06 -175.90 -0.36 -6.42 16 9 C 0.10 0.85 4.78 -4.85 -0.02 0.82 16 10 C -0.13 -1.19 5.39 -25.07 -0.14 -1.33 16 11 C -0.09 -0.87 4.46 -28.35 -0.13 -1.00 16 12 C -0.08 -0.91 0.51 -157.51 -0.08 -0.99 16 13 C -0.13 -1.18 6.08 -24.69 -0.15 -1.33 16 14 C 0.10 1.21 7.03 -2.90 -0.02 1.19 16 15 N -0.61 -9.86 2.95 -172.21 -0.51 -10.37 16 16 C 0.13 2.53 5.87 -3.99 -0.02 2.50 16 17 C 0.01 0.35 5.30 -27.88 -0.15 0.20 16 18 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 19 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 22 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 C 0.52 8.06 5.94 -10.93 -0.06 8.00 16 27 O -0.52 -9.35 12.70 5.64 0.07 -9.28 16 28 C -0.12 -1.38 3.61 -31.10 -0.11 -1.50 16 29 C 0.12 1.51 5.46 -5.49 -0.03 1.48 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.38 6.18 -51.93 -0.32 0.06 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.40 4.33 -52.05 -0.23 0.18 16 34 H 0.08 0.91 7.21 -51.74 -0.37 0.54 16 35 H 0.09 1.11 5.94 -52.04 -0.31 0.81 16 36 H 0.06 0.39 8.21 -51.46 -0.42 -0.04 16 37 H 0.06 0.51 7.46 -51.23 -0.38 0.12 16 38 H 0.06 0.59 7.29 -51.53 -0.38 0.21 16 39 H 0.09 0.68 7.87 -52.15 -0.41 0.27 16 40 H 0.08 0.67 7.50 -52.00 -0.39 0.28 16 41 H 0.08 0.82 8.13 -51.98 -0.42 0.40 16 42 H 0.07 0.88 8.00 -51.92 -0.42 0.47 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.07 1.45 7.91 -51.93 -0.41 1.04 16 45 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 48 H 0.08 0.94 7.63 -51.46 -0.39 0.54 16 49 H 0.07 0.83 7.82 -51.49 -0.40 0.43 16 50 H 0.09 1.33 6.81 -51.91 -0.35 0.98 16 51 H 0.09 1.16 7.55 -51.77 -0.39 0.77 16 LS Contribution 396.93 15.07 5.98 5.98 Total: -1.00 -34.68 396.93 -7.84 -42.52 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -8.03 Total: -2.30 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -1.58 Total: 2.01 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.65 Total: -47.18 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: 0.16 Total: -17.15 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.68 -7.84 -42.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269265653.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.611 kcal (2) G-P(sol) polarization free energy of solvation -34.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds