Wall clock time and date at job start Wed Apr 1 2020 04:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47425 * 2 1 4 4 C 1.47201 * 109.47324 * 120.00631 * 2 1 3 5 5 N 2.60798 * 109.47305 * 120.00501 * 2 1 3 6 6 C 1.50699 * 109.46932 * 240.00650 * 2 1 3 7 7 O 1.21287 * 120.00024 * 267.55578 * 6 2 1 8 8 N 1.34983 * 120.00317 * 87.55569 * 6 2 1 9 9 C 1.49809 * 120.51705 * 354.94793 * 8 6 2 10 10 C 1.45967 * 108.86116 * 117.06872 * 9 8 6 11 11 C 1.51673 * 115.93292 * 55.37447 * 10 9 8 12 12 C 1.49448 * 109.66156 * 270.27496 * 11 10 9 13 13 C 1.55124 * 108.87097 * 207.02963 * 12 11 10 14 14 C 1.53957 * 103.23900 * 134.74383 * 13 12 11 15 15 N 1.46583 * 106.00363 * 341.60894 * 14 13 12 16 16 C 1.46465 * 124.58337 * 198.23397 * 15 14 13 17 17 C 1.53000 * 109.47172 * 89.99790 * 16 15 14 18 18 C 1.50703 * 109.47312 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99478 * 0.28065 * 18 17 16 20 20 C 1.37868 * 119.99774 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99703 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00404 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47097 * 89.99824 * 22 20 18 24 24 H 1.48496 * 109.47094 * 209.99796 * 22 20 18 25 25 H 1.48493 * 109.47112 * 329.99571 * 22 20 18 26 26 C 1.34596 * 110.87424 * 19.70481 * 15 14 13 27 27 O 1.21534 * 122.81460 * 165.18969 * 26 15 14 28 28 C 1.55043 * 112.10311 * 88.87422 * 12 11 10 29 29 C 1.43332 * 120.36833 * 175.55079 * 8 6 2 30 30 H 1.09002 * 109.47094 * 298.45479 * 1 2 3 31 31 H 1.09001 * 109.46901 * 58.45516 * 1 2 3 32 32 H 1.08995 * 109.47263 * 178.45186 * 1 2 3 33 33 H 1.09213 * 109.63605 * 357.07234 * 9 8 6 34 34 H 1.09177 * 109.68966 * 237.12981 * 9 8 6 35 35 H 1.08056 * 109.94403 * 287.94132 * 10 9 8 36 36 H 1.10631 * 106.32341 * 174.17037 * 10 9 8 37 37 H 1.10007 * 109.54440 * 150.33305 * 11 10 9 38 38 H 1.09533 * 110.46101 * 31.90920 * 11 10 9 39 39 H 1.09178 * 110.28702 * 15.91873 * 13 12 11 40 40 H 1.09069 * 110.45669 * 253.73196 * 13 12 11 41 41 H 1.09130 * 110.44050 * 222.25028 * 14 13 12 42 42 H 1.09234 * 110.33942 * 100.74835 * 14 13 12 43 43 H 1.08997 * 109.46921 * 329.99789 * 16 15 14 44 44 H 1.08998 * 109.47191 * 210.00138 * 16 15 14 45 45 H 1.09003 * 109.47062 * 59.99748 * 17 16 15 46 46 H 1.08998 * 109.47347 * 300.00252 * 17 16 15 47 47 H 0.97003 * 120.00157 * 180.02562 * 21 20 18 48 48 H 1.09079 * 109.22920 * 96.16502 * 28 12 11 49 49 H 1.09234 * 108.77397 * 214.80030 * 28 12 11 50 50 H 1.09449 * 107.60870 * 32.13632 * 29 8 6 51 51 H 1.08915 * 108.50141 * 147.85091 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6940 1.2018 5 7 2.3994 -1.2296 2.1293 6 6 2.0323 -0.7103 -1.2305 7 8 2.2766 -1.8975 -1.1882 8 7 2.2102 -0.0252 -2.3799 9 6 1.8066 1.4141 -2.4779 10 6 2.9961 2.2217 -2.7298 11 6 3.8195 1.8299 -3.9418 12 6 4.8497 0.8224 -3.5455 13 6 6.0574 0.9327 -4.5128 14 6 7.2714 0.8963 -3.5667 15 7 6.7556 1.2248 -2.2346 16 6 7.5806 1.6755 -1.1115 17 6 7.6790 3.2023 -1.1313 18 6 8.5284 3.6660 0.0239 19 1 8.9591 2.9437 0.7015 20 6 8.7608 5.0119 0.2119 21 7 9.5025 5.4166 1.2197 22 14 8.0223 6.2607 -0.9648 23 1 6.6850 6.6761 -0.4705 24 1 8.9102 7.4481 -1.0477 25 1 7.8847 5.6506 -2.3116 26 6 5.4258 1.0259 -2.1727 27 8 4.8156 0.9747 -1.1229 28 6 4.3165 -0.6296 -3.6507 29 6 2.7768 -0.6703 -3.5277 30 1 -0.3633 0.4897 0.9035 31 1 -0.3633 0.5376 -0.8758 32 1 -0.3633 -1.0272 -0.0278 33 1 1.3394 1.7288 -1.5423 34 1 1.0948 1.5417 -3.2959 35 1 3.6050 2.2690 -1.8383 36 1 2.6400 3.2551 -2.9004 37 1 4.3201 2.7203 -4.3501 38 1 3.1743 1.4219 -4.7273 39 1 6.0159 1.8739 -5.0644 40 1 6.0703 0.0892 -5.2042 41 1 8.0165 1.6320 -3.8743 42 1 7.7181 -0.1005 -3.5603 43 1 8.5786 1.2460 -1.1984 44 1 7.1266 1.3528 -0.1746 45 1 6.6809 3.6318 -1.0445 46 1 8.1330 3.5249 -2.0682 47 1 9.6658 6.3636 1.3523 48 1 4.6157 -1.0536 -4.6101 49 1 4.7588 -1.2255 -2.8491 50 1 2.4695 -1.7204 -3.5026 51 1 2.3415 -0.2280 -4.4227 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269265654.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:23 Heat of formation + Delta-G solvation = -31.620116 kcal Electronic energy + Delta-G solvation = -32820.216302 eV Core-core repulsion = 28719.998371 eV Total energy + Delta-G solvation = -4100.217931 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.40553 -40.06322 -37.46146 -36.46617 -36.20231 -34.77902 -33.57131 -33.11580 -32.58988 -30.95827 -28.94217 -27.43281 -26.18365 -25.55265 -24.96321 -23.14207 -21.97664 -21.76993 -20.44947 -19.55485 -18.46312 -17.84533 -17.52672 -17.06047 -16.37231 -15.99388 -15.63356 -15.58497 -15.10804 -14.58514 -14.53595 -14.43763 -14.08950 -13.96114 -13.68132 -13.46565 -13.23612 -13.05982 -12.96060 -12.89689 -12.74797 -12.69549 -12.55642 -12.34798 -12.24722 -12.00305 -11.87425 -11.82020 -11.56786 -11.48250 -11.08364 -11.03334 -10.94577 -10.71956 -10.50389 -10.42666 -10.14447 -9.88378 -9.88028 -9.37107 -9.13821 -8.82944 -8.60566 -8.14366 -6.10599 -4.10007 2.25024 2.57272 2.84215 2.85932 3.03945 3.24946 3.31899 3.34139 3.43067 3.76262 4.15248 4.15398 4.32038 4.38538 4.51201 4.61277 4.66017 4.78942 4.83364 4.89485 4.92556 4.99617 5.08782 5.20263 5.23015 5.24075 5.29563 5.34009 5.43466 5.51689 5.62471 5.63274 5.67643 5.68405 5.72216 5.74518 5.86359 5.91710 5.96033 6.09005 6.30574 6.34513 6.44067 6.56761 6.81780 7.10387 7.14555 7.26891 7.57088 7.63538 7.71191 7.98525 8.43067 8.53540 8.92932 9.50623 11.02625 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010883 B = 0.003748 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.196778 B = 7467.927486 C = 8489.445254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.013 4.013 3 H 0.138 0.862 4 C 0.224 3.776 5 N -0.414 5.414 6 C 0.541 3.459 7 O -0.532 6.532 8 N -0.593 5.593 9 C 0.121 3.879 10 C -0.172 4.172 11 C -0.086 4.086 12 C -0.087 4.087 13 C -0.131 4.131 14 C 0.099 3.901 15 N -0.617 5.617 16 C 0.137 3.863 17 C -0.020 4.020 18 C -0.522 4.522 19 H 0.074 0.926 20 C 0.070 3.930 21 N -0.900 5.900 22 Si 0.881 3.119 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.267 1.267 26 C 0.527 3.473 27 O -0.524 6.524 28 C -0.115 4.115 29 C 0.118 3.882 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.013 0.987 46 H 0.016 0.984 47 H 0.264 0.736 48 H 0.085 0.915 49 H 0.067 0.933 50 H 0.077 0.923 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.745 -7.745 -17.541 26.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.037 4.037 3 H 0.156 0.844 4 C -0.095 4.095 5 N -0.089 5.089 6 C 0.326 3.674 7 O -0.408 6.408 8 N -0.326 5.326 9 C 0.000 4.000 10 C -0.209 4.209 11 C -0.124 4.124 12 C -0.091 4.091 13 C -0.169 4.169 14 C -0.025 4.025 15 N -0.349 5.349 16 C 0.017 3.983 17 C -0.058 4.058 18 C -0.561 4.561 19 H 0.092 0.908 20 C -0.132 4.132 21 N -0.538 5.538 22 Si 0.708 3.292 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.192 1.192 26 C 0.315 3.685 27 O -0.401 6.401 28 C -0.154 4.154 29 C -0.006 4.006 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.031 0.969 46 H 0.034 0.966 47 H 0.074 0.926 48 H 0.103 0.897 49 H 0.086 0.914 50 H 0.095 0.905 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.206 -9.024 -15.403 25.498 hybrid contribution 0.032 1.234 -0.968 1.569 sum -18.174 -7.790 -16.371 25.670 Atomic orbital electron populations 1.21786 0.89664 1.04254 1.04230 1.18832 0.98392 1.00517 0.85974 0.84446 1.28007 0.93799 0.93726 0.93947 1.81168 1.07522 1.08288 1.11953 1.19837 0.77174 0.86738 0.83603 1.90734 1.50989 1.15238 1.83858 1.47714 1.61041 1.12052 1.11747 1.21097 0.96887 0.79128 1.02920 1.20820 0.98877 0.99565 1.01680 1.20674 0.96523 0.97801 0.97382 1.20921 0.96499 0.97380 0.94255 1.23074 0.93259 1.03627 0.96920 1.21912 0.96830 1.00954 0.82800 1.48594 1.08251 1.65625 1.12465 1.21551 0.93085 0.96934 0.86698 1.19857 0.96981 0.91229 0.97711 1.20967 1.30780 0.93168 1.11165 0.90836 1.24978 0.94633 0.98405 0.95143 1.69909 1.38589 1.15656 1.29675 0.86760 0.79314 0.80996 0.82088 1.20240 1.21306 1.19184 1.20312 0.82451 0.75598 0.90161 1.90671 1.66643 1.50745 1.32018 1.22758 0.95885 0.93835 1.02914 1.20826 0.93082 0.98969 0.87738 0.90228 0.90021 0.90964 0.89263 0.90692 0.87915 0.91598 0.91009 0.90442 0.89933 0.89545 0.90281 0.91766 0.91257 0.90437 0.96860 0.96565 0.92610 0.89671 0.91414 0.90481 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.96 37.16 0.33 -0.57 16 2 C -0.01 -0.14 2.24 -94.56 -0.21 -0.35 16 3 H 0.14 1.27 6.52 -51.93 -0.34 0.93 16 4 C 0.22 3.37 14.05 -20.76 -0.29 3.08 16 5 N -0.41 -7.42 18.54 42.15 0.78 -6.64 16 6 C 0.54 6.81 6.75 -10.89 -0.07 6.74 16 7 O -0.53 -8.83 15.82 5.55 0.09 -8.74 16 8 N -0.59 -5.81 2.75 -175.93 -0.48 -6.29 16 9 C 0.12 0.84 5.71 -5.53 -0.03 0.81 16 10 C -0.17 -1.60 4.67 -30.74 -0.14 -1.75 16 11 C -0.09 -0.74 4.59 -29.16 -0.13 -0.87 16 12 C -0.09 -0.93 0.67 -155.42 -0.10 -1.04 16 13 C -0.13 -1.17 6.20 -25.11 -0.16 -1.33 16 14 C 0.10 1.20 7.34 -3.50 -0.03 1.17 16 15 N -0.62 -10.25 2.94 -173.08 -0.51 -10.76 16 16 C 0.14 2.79 5.93 -4.06 -0.02 2.76 16 17 C -0.02 -0.46 4.36 -27.88 -0.12 -0.58 16 18 C -0.52 -14.80 9.66 -34.44 -0.33 -15.14 16 19 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 20 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 21 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 22 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 25 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 26 C 0.53 8.44 5.64 -11.28 -0.06 8.37 16 27 O -0.52 -9.93 14.93 5.34 0.08 -9.85 16 28 C -0.11 -1.12 5.57 -24.86 -0.14 -1.26 16 29 C 0.12 1.05 4.84 -4.92 -0.02 1.02 16 30 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.31 7.45 -51.93 -0.39 -0.07 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.49 5.05 -51.81 -0.26 0.23 16 34 H 0.07 0.32 8.16 -51.83 -0.42 -0.10 16 35 H 0.10 1.40 4.72 -52.46 -0.25 1.15 16 36 H 0.07 0.51 8.23 -50.99 -0.42 0.09 16 37 H 0.07 0.62 7.38 -51.36 -0.38 0.24 16 38 H 0.08 0.47 6.36 -51.63 -0.33 0.14 16 39 H 0.08 0.67 7.25 -51.83 -0.38 0.29 16 40 H 0.09 0.56 7.03 -51.89 -0.36 0.19 16 41 H 0.08 0.95 8.15 -51.86 -0.42 0.53 16 42 H 0.06 0.70 8.16 -51.80 -0.42 0.28 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.08 1.73 7.73 -51.93 -0.40 1.33 16 45 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 46 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 48 H 0.08 0.59 7.04 -51.88 -0.37 0.23 16 49 H 0.07 0.90 7.65 -51.80 -0.40 0.51 16 50 H 0.08 0.77 7.31 -51.67 -0.38 0.39 16 51 H 0.08 0.45 6.63 -51.98 -0.34 0.10 16 LS Contribution 396.13 15.07 5.97 5.97 Total: -1.00 -38.04 396.13 -7.49 -45.52 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -7.88 Total: -2.13 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -1.64 Total: 3.00 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.56 Total: -50.55 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.17 Total: -18.59 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.04 -7.49 -45.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269265654.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.904 kcal (2) G-P(sol) polarization free energy of solvation -38.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds