Wall clock time and date at job start Wed Apr 1 2020 04:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47425 * 2 1 4 4 C 1.47201 * 109.47324 * 120.00631 * 2 1 3 5 5 N 2.60798 * 109.47305 * 120.00501 * 2 1 3 6 6 C 1.50699 * 109.46932 * 240.00650 * 2 1 3 7 7 O 1.21287 * 120.00024 * 267.55578 * 6 2 1 8 8 N 1.34983 * 120.00317 * 87.55569 * 6 2 1 9 9 C 1.49809 * 120.51705 * 354.94793 * 8 6 2 10 10 C 1.45967 * 108.86116 * 117.06872 * 9 8 6 11 11 C 1.51673 * 115.93292 * 55.37447 * 10 9 8 12 12 C 1.49448 * 109.66156 * 270.27496 * 11 10 9 13 13 C 1.55124 * 108.87097 * 207.02963 * 12 11 10 14 14 C 1.53957 * 103.23900 * 134.74383 * 13 12 11 15 15 N 1.46583 * 106.00363 * 341.60894 * 14 13 12 16 16 C 1.46465 * 124.58337 * 198.23397 * 15 14 13 17 17 C 1.53000 * 109.47172 * 89.99790 * 16 15 14 18 18 C 1.50703 * 109.47312 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99478 * 0.28065 * 18 17 16 20 20 C 1.37868 * 119.99774 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99703 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00404 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47097 * 89.99824 * 22 20 18 24 24 H 1.48496 * 109.47094 * 209.99796 * 22 20 18 25 25 H 1.48493 * 109.47112 * 329.99571 * 22 20 18 26 26 C 1.34596 * 110.87424 * 19.70481 * 15 14 13 27 27 O 1.21534 * 122.81460 * 165.18969 * 26 15 14 28 28 C 1.55043 * 112.10311 * 88.87422 * 12 11 10 29 29 C 1.43332 * 120.36833 * 175.55079 * 8 6 2 30 30 H 1.09002 * 109.47094 * 298.45479 * 1 2 3 31 31 H 1.09001 * 109.46901 * 58.45516 * 1 2 3 32 32 H 1.08995 * 109.47263 * 178.45186 * 1 2 3 33 33 H 1.09213 * 109.63605 * 357.07234 * 9 8 6 34 34 H 1.09177 * 109.68966 * 237.12981 * 9 8 6 35 35 H 1.08056 * 109.94403 * 287.94132 * 10 9 8 36 36 H 1.10631 * 106.32341 * 174.17037 * 10 9 8 37 37 H 1.10007 * 109.54440 * 150.33305 * 11 10 9 38 38 H 1.09533 * 110.46101 * 31.90920 * 11 10 9 39 39 H 1.09178 * 110.28702 * 15.91873 * 13 12 11 40 40 H 1.09069 * 110.45669 * 253.73196 * 13 12 11 41 41 H 1.09130 * 110.44050 * 222.25028 * 14 13 12 42 42 H 1.09234 * 110.33942 * 100.74835 * 14 13 12 43 43 H 1.08997 * 109.46921 * 329.99789 * 16 15 14 44 44 H 1.08998 * 109.47191 * 210.00138 * 16 15 14 45 45 H 1.09003 * 109.47062 * 59.99748 * 17 16 15 46 46 H 1.08998 * 109.47347 * 300.00252 * 17 16 15 47 47 H 0.97003 * 120.00157 * 180.02562 * 21 20 18 48 48 H 1.09079 * 109.22920 * 96.16502 * 28 12 11 49 49 H 1.09234 * 108.77397 * 214.80030 * 28 12 11 50 50 H 1.09449 * 107.60870 * 32.13632 * 29 8 6 51 51 H 1.08915 * 108.50141 * 147.85091 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6940 1.2018 5 7 2.3994 -1.2296 2.1293 6 6 2.0323 -0.7103 -1.2305 7 8 2.2766 -1.8975 -1.1882 8 7 2.2102 -0.0252 -2.3799 9 6 1.8066 1.4141 -2.4779 10 6 2.9961 2.2217 -2.7298 11 6 3.8195 1.8299 -3.9418 12 6 4.8497 0.8224 -3.5455 13 6 6.0574 0.9327 -4.5128 14 6 7.2714 0.8963 -3.5667 15 7 6.7556 1.2248 -2.2346 16 6 7.5806 1.6755 -1.1115 17 6 7.6790 3.2023 -1.1313 18 6 8.5284 3.6660 0.0239 19 1 8.9591 2.9437 0.7015 20 6 8.7608 5.0119 0.2119 21 7 9.5025 5.4166 1.2197 22 14 8.0223 6.2607 -0.9648 23 1 6.6850 6.6761 -0.4705 24 1 8.9102 7.4481 -1.0477 25 1 7.8847 5.6506 -2.3116 26 6 5.4258 1.0259 -2.1727 27 8 4.8156 0.9747 -1.1229 28 6 4.3165 -0.6296 -3.6507 29 6 2.7768 -0.6703 -3.5277 30 1 -0.3633 0.4897 0.9035 31 1 -0.3633 0.5376 -0.8758 32 1 -0.3633 -1.0272 -0.0278 33 1 1.3394 1.7288 -1.5423 34 1 1.0948 1.5417 -3.2959 35 1 3.6050 2.2690 -1.8383 36 1 2.6400 3.2551 -2.9004 37 1 4.3201 2.7203 -4.3501 38 1 3.1743 1.4219 -4.7273 39 1 6.0159 1.8739 -5.0644 40 1 6.0703 0.0892 -5.2042 41 1 8.0165 1.6320 -3.8743 42 1 7.7181 -0.1005 -3.5603 43 1 8.5786 1.2460 -1.1984 44 1 7.1266 1.3528 -0.1746 45 1 6.6809 3.6318 -1.0445 46 1 8.1330 3.5249 -2.0682 47 1 9.6658 6.3636 1.3523 48 1 4.6157 -1.0536 -4.6101 49 1 4.7588 -1.2255 -2.8491 50 1 2.4695 -1.7204 -3.5026 51 1 2.3415 -0.2280 -4.4227 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269265654.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:22 Heat of formation + Delta-G solvation = -58.354685 kcal Electronic energy + Delta-G solvation = -32821.375600 eV Core-core repulsion = 28719.998371 eV Total energy + Delta-G solvation = -4101.377229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.32766 -41.04461 -38.43359 -37.64093 -37.41555 -36.09100 -34.94450 -34.25849 -33.57002 -32.47505 -30.16581 -28.22260 -27.24345 -26.61510 -26.03704 -23.98622 -23.37584 -22.67801 -21.77795 -20.50025 -19.59006 -19.06178 -18.73520 -18.31862 -17.45048 -17.02569 -16.70306 -16.52536 -16.44649 -16.06124 -15.51146 -15.36983 -15.15198 -15.04380 -14.75786 -14.65150 -14.60246 -14.35853 -14.18654 -13.85413 -13.78098 -13.69191 -13.58865 -13.29076 -13.21217 -13.09901 -12.95768 -12.76927 -12.65813 -12.47006 -12.40929 -12.21837 -12.04223 -11.78534 -11.70904 -11.64188 -11.55789 -11.38563 -11.21437 -10.83508 -10.78147 -10.32465 -9.60292 -9.47915 -8.35161 -6.42077 1.26199 1.31622 1.34332 1.46261 1.56870 1.67651 1.71851 2.16994 2.20461 2.31714 2.78628 2.99574 3.30391 3.38441 3.53329 3.78212 3.90958 4.00815 4.04888 4.16864 4.18073 4.22758 4.25675 4.29673 4.41797 4.48938 4.55895 4.68484 4.72562 4.75453 4.75997 4.78178 4.85463 4.88120 4.99686 5.02771 5.06775 5.09910 5.14002 5.18832 5.20853 5.27996 5.31003 5.41765 5.48117 5.64336 5.75432 5.80680 6.17567 6.28257 6.40331 6.43612 6.64535 7.12081 7.22587 7.30828 8.81729 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010883 B = 0.003748 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.196778 B = 7467.927486 C = 8489.445254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.014 4.014 3 H 0.153 0.847 4 C 0.240 3.760 5 N -0.480 5.480 6 C 0.532 3.468 7 O -0.587 6.587 8 N -0.586 5.586 9 C 0.114 3.886 10 C -0.175 4.175 11 C -0.088 4.088 12 C -0.078 4.078 13 C -0.118 4.118 14 C 0.087 3.913 15 N -0.630 5.630 16 C 0.150 3.850 17 C -0.003 4.003 18 C -0.540 4.540 19 H 0.028 0.972 20 C 0.007 3.993 21 N -0.949 5.949 22 Si 0.956 3.044 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.241 1.241 26 C 0.511 3.489 27 O -0.565 6.565 28 C -0.109 4.109 29 C 0.110 3.890 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.041 0.959 45 H 0.006 0.994 46 H 0.031 0.969 47 H 0.269 0.731 48 H 0.123 0.877 49 H 0.018 0.982 50 H 0.061 0.939 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.636 -5.896 -23.187 32.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.039 4.039 3 H 0.170 0.830 4 C -0.078 4.078 5 N -0.156 5.156 6 C 0.319 3.681 7 O -0.467 6.467 8 N -0.316 5.316 9 C -0.005 4.005 10 C -0.213 4.213 11 C -0.125 4.125 12 C -0.082 4.082 13 C -0.155 4.155 14 C -0.035 4.035 15 N -0.363 5.363 16 C 0.028 3.972 17 C -0.041 4.041 18 C -0.578 4.578 19 H 0.047 0.953 20 C -0.190 4.190 21 N -0.589 5.589 22 Si 0.779 3.221 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.164 1.164 26 C 0.301 3.699 27 O -0.444 6.444 28 C -0.148 4.148 29 C -0.014 4.014 30 H 0.112 0.888 31 H 0.138 0.862 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.141 0.859 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.138 0.862 39 H 0.121 0.879 40 H 0.140 0.860 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.059 0.941 45 H 0.024 0.976 46 H 0.049 0.951 47 H 0.077 0.923 48 H 0.142 0.858 49 H 0.037 0.963 50 H 0.080 0.920 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -21.102 -7.164 -21.109 30.696 hybrid contribution 1.029 0.626 0.881 1.492 sum -20.073 -6.538 -20.228 29.238 Atomic orbital electron populations 1.21873 0.85997 1.04517 1.06755 1.19234 1.01217 1.00069 0.83337 0.82971 1.29046 0.92164 0.92497 0.94134 1.81148 1.09760 1.10435 1.14300 1.20163 0.76846 0.86296 0.84803 1.90706 1.53637 1.17559 1.84815 1.47887 1.59639 1.13140 1.10950 1.21464 0.96910 0.76620 1.05544 1.20795 0.99020 1.01439 1.00019 1.20817 0.96309 0.97448 0.97925 1.20958 0.97937 0.98568 0.90705 1.23169 0.89943 1.06336 0.96074 1.22256 0.98675 1.01423 0.81117 1.48684 1.08659 1.65848 1.13118 1.21003 0.93733 0.95107 0.87388 1.19641 0.95297 0.93155 0.96050 1.21294 1.31430 0.92921 1.12155 0.95319 1.26041 0.94925 1.00873 0.97187 1.70073 1.40323 1.16487 1.32012 0.85572 0.78404 0.77776 0.80365 1.19482 1.20435 1.16416 1.21476 0.82049 0.74268 0.92102 1.90648 1.67371 1.52075 1.34320 1.22809 0.96402 0.92603 1.03032 1.21053 0.92573 0.98820 0.88944 0.88847 0.86240 0.91909 0.88107 0.85930 0.92809 0.89544 0.90437 0.86222 0.87937 0.85960 0.90037 0.90943 0.90954 0.94079 0.97589 0.95100 0.92260 0.85848 0.96260 0.92007 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 8.96 71.98 0.64 -0.79 16 2 C -0.01 -0.30 2.24 -13.35 -0.03 -0.33 16 3 H 0.15 2.71 6.52 -2.39 -0.02 2.70 16 4 C 0.24 7.66 14.05 89.44 1.26 8.91 16 5 N -0.48 -18.62 18.54 20.01 0.37 -18.25 16 6 C 0.53 13.28 6.75 87.62 0.59 13.87 16 7 O -0.59 -20.34 15.82 -3.05 -0.05 -20.39 16 8 N -0.59 -9.94 2.75 -828.79 -2.28 -12.23 16 9 C 0.11 1.07 5.71 83.58 0.48 1.55 16 10 C -0.17 -2.59 4.67 28.00 0.13 -2.46 16 11 C -0.09 -1.04 4.59 29.02 0.13 -0.90 16 12 C -0.08 -1.42 0.67 -52.77 -0.04 -1.46 16 13 C -0.12 -1.55 6.20 31.65 0.20 -1.35 16 14 C 0.09 1.93 7.34 86.69 0.64 2.56 16 15 N -0.63 -21.02 2.94 -819.90 -2.41 -23.42 16 16 C 0.15 6.41 5.93 86.39 0.51 6.92 16 17 C 0.00 -0.15 4.36 29.85 0.13 -0.02 16 18 C -0.54 -32.00 9.66 25.60 0.25 -31.76 16 19 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 20 C 0.01 0.42 5.47 84.65 0.46 0.88 16 21 N -0.95 -60.30 13.96 21.44 0.30 -60.00 16 22 Si 0.96 43.87 27.47 68.60 1.88 45.75 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.24 -9.96 6.54 99.48 0.65 -9.31 16 26 C 0.51 16.30 5.64 87.55 0.49 16.79 16 27 O -0.56 -22.46 14.93 -3.82 -0.06 -22.52 16 28 C -0.11 -1.83 5.57 31.81 0.18 -1.66 16 29 C 0.11 1.57 4.84 87.48 0.42 1.99 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.12 0.40 7.45 -2.39 -0.02 0.38 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 0.71 5.05 -2.27 -0.01 0.69 16 34 H 0.12 0.13 8.16 -2.29 -0.02 0.11 16 35 H 0.05 1.40 4.72 -2.88 -0.01 1.38 16 36 H 0.09 0.94 8.23 -1.51 -0.01 0.92 16 37 H 0.08 0.88 7.38 -1.85 -0.01 0.86 16 38 H 0.12 0.47 6.36 -2.10 -0.01 0.46 16 39 H 0.10 1.02 7.25 -2.29 -0.02 1.00 16 40 H 0.12 0.79 7.03 -2.35 -0.02 0.77 16 41 H 0.08 1.75 8.15 -2.32 -0.02 1.73 16 42 H 0.07 1.45 8.16 -2.26 -0.02 1.43 16 43 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 44 H 0.04 2.01 7.73 -2.39 -0.02 1.99 16 45 H 0.01 0.29 7.57 -2.39 -0.02 0.27 16 46 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 47 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 48 H 0.12 1.10 7.04 -2.35 -0.02 1.08 16 49 H 0.02 0.50 7.65 -2.26 -0.02 0.49 16 50 H 0.06 1.11 7.31 -2.15 -0.02 1.10 16 51 H 0.12 0.61 6.63 -2.43 -0.02 0.59 16 Total: -1.00 -94.97 396.13 5.11 -89.86 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 0.91 Total: 8.45 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 6.45 Total: 12.75 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -4.02 Total: -113.90 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -0.11 Total: -42.91 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.75 kcal Total: -94.97 5.11 -89.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269265654.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.503 kcal (2) G-P(sol) polarization free energy of solvation -94.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds