Wall clock time and date at job start Wed Apr 1 2020 05:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.46954 * 2 1 4 4 O 1.42902 * 109.47067 * 119.99205 * 2 1 3 5 5 C 1.42896 * 114.00239 * 270.00481 * 4 2 1 6 6 C 1.50702 * 109.47296 * 180.02562 * 5 4 2 7 7 C 1.38654 * 120.78618 * 269.71856 * 6 5 4 8 8 C 1.38203 * 119.16109 * 179.79760 * 7 6 5 9 9 N 1.31877 * 120.76532 * 0.48478 * 8 7 6 10 10 C 1.31868 * 121.72097 * 359.74425 * 9 8 7 11 11 C 1.38200 * 120.77053 * 0.02562 * 10 9 8 12 12 C 1.50693 * 109.47220 * 239.99522 * 2 1 3 13 13 O 1.21287 * 120.00128 * 244.99959 * 12 2 1 14 14 N 1.34771 * 120.00118 * 65.00143 * 12 2 1 15 15 C 1.46507 * 120.00161 * 175.57380 * 14 12 2 16 16 C 1.53002 * 109.47163 * 174.05668 * 15 14 12 17 17 C 1.52997 * 109.46798 * 54.05832 * 15 14 12 18 18 N 1.46495 * 109.47427 * 60.00248 * 17 15 14 19 19 C 1.36939 * 120.00172 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99811 * 359.97438 * 19 18 17 21 21 C 1.38809 * 119.99946 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00196 * 359.97438 * 21 19 18 23 23 Si 1.86810 * 119.99866 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47068 * 59.99931 * 23 21 19 25 25 H 1.48498 * 109.46831 * 180.02562 * 23 21 19 26 26 H 1.48492 * 109.46967 * 299.99822 * 23 21 19 27 27 C 1.53001 * 109.47035 * 294.05711 * 15 14 12 28 28 C 1.53001 * 117.50020 * 2.15883 * 27 15 14 29 29 C 1.52995 * 117.49885 * 293.49972 * 27 15 14 30 30 H 1.09008 * 109.47344 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47771 * 300.00271 * 1 2 3 32 32 H 1.09003 * 109.47475 * 60.00423 * 1 2 3 33 33 H 1.08999 * 109.46960 * 299.99452 * 5 4 2 34 34 H 1.08998 * 109.47760 * 59.99947 * 5 4 2 35 35 H 1.07995 * 120.41969 * 359.97438 * 7 6 5 36 36 H 1.07995 * 119.62255 * 180.20409 * 8 7 6 37 37 H 1.07998 * 119.61338 * 180.02562 * 10 9 8 38 38 H 1.07998 * 120.42812 * 180.02562 * 11 10 9 39 39 H 0.97005 * 120.00250 * 355.57247 * 14 12 2 40 40 H 1.08994 * 109.46980 * 59.99902 * 16 15 14 41 41 H 1.08994 * 109.46821 * 180.02562 * 16 15 14 42 42 H 1.08998 * 109.46946 * 299.99918 * 16 15 14 43 43 H 1.09003 * 109.47209 * 180.02562 * 17 15 14 44 44 H 1.09004 * 109.47135 * 299.99558 * 17 15 14 45 45 H 0.96998 * 119.99727 * 359.97438 * 18 17 15 46 46 H 0.97001 * 120.00113 * 180.02562 * 22 21 19 47 47 H 1.09002 * 115.54817 * 147.82361 * 27 15 14 48 48 H 1.09000 * 117.49705 * 359.97438 * 28 27 15 49 49 H 1.08996 * 117.49708 * 145.01534 * 28 27 15 50 50 H 1.09004 * 117.49409 * 214.98210 * 29 27 15 51 51 H 1.08998 * 117.49996 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.1999 0.1831 2.2941 6 6 2.7013 -0.6279 3.4612 7 6 1.8147 -1.2039 4.3581 8 6 2.3111 -1.9445 5.4142 9 7 3.6105 -2.0977 5.5787 10 6 4.4827 -1.5606 4.7482 11 6 4.0602 -0.8108 3.6668 12 6 2.0323 -0.7105 -1.2303 13 8 2.6530 -1.7468 -1.1213 14 7 1.7919 -0.1944 -2.4519 15 6 2.3621 -0.8316 -3.6415 16 6 1.8211 -0.1445 -4.8970 17 6 1.9742 -2.3114 -3.6628 18 7 0.5147 -2.4333 -3.6957 19 6 -0.0686 -3.6721 -3.7186 20 1 0.5474 -4.5592 -3.7128 21 6 -1.4515 -3.7876 -3.7492 22 7 -2.2022 -2.7065 -3.7558 23 14 -2.2472 -5.4774 -3.7812 24 1 -1.8508 -6.2342 -2.5665 25 1 -3.7243 -5.3285 -3.8121 26 1 -1.7989 -6.2128 -4.9908 27 6 3.8864 -0.7042 -3.6072 28 6 4.5112 -0.0242 -2.3873 29 6 4.4811 0.6995 -3.7357 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 2.9318 0.9515 2.0450 34 1 1.2537 0.6549 2.5589 35 1 0.7496 -1.0779 4.2316 36 1 1.6271 -2.3992 6.1154 37 1 5.5394 -1.7082 4.9150 38 1 4.7793 -0.3738 2.9899 39 1 1.2413 0.5990 -2.5435 40 1 2.0973 0.9098 -4.8818 41 1 2.2449 -0.6189 -5.7820 42 1 0.7351 -0.2352 -4.9214 43 1 2.3988 -2.7857 -4.5476 44 1 2.3597 -2.8009 -2.7684 45 1 -0.0385 -1.6366 -3.7005 46 1 -3.1686 -2.7872 -3.7768 47 1 4.4373 -1.5278 -4.0615 48 1 3.8363 0.3328 -1.6094 49 1 5.4733 -0.4002 -2.0393 50 1 5.4235 0.7995 -4.2744 51 1 3.7865 1.5323 -3.8452 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269634320.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:43 Heat of formation + Delta-G solvation = 8.504521 kcal Electronic energy + Delta-G solvation = -31636.599656 eV Core-core repulsion = 27538.121660 eV Total energy + Delta-G solvation = -4098.477996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.51027 -40.25226 -38.34627 -36.73401 -34.91592 -33.65948 -33.30112 -31.85712 -31.39252 -30.50122 -29.33729 -27.04302 -26.01602 -24.28021 -23.65724 -23.59396 -22.20712 -22.10200 -21.34262 -20.54970 -18.96842 -17.58985 -17.22185 -17.08794 -16.63438 -16.45468 -15.78695 -15.73888 -15.30898 -15.11210 -14.57393 -14.32190 -13.97047 -13.94336 -13.83715 -13.64707 -13.25450 -13.08872 -12.84511 -12.76483 -12.36729 -12.10912 -12.08919 -12.02070 -11.84857 -11.69745 -11.31314 -11.22343 -11.08934 -10.82334 -10.76785 -10.69097 -10.22376 -10.06147 -10.00155 -9.90065 -9.76156 -9.67644 -9.60751 -9.32397 -9.09371 -8.63497 -8.54442 -6.76161 -5.68967 -2.93854 0.94648 0.96408 2.98646 3.09591 3.49982 3.53285 3.55751 3.61530 3.94774 4.04211 4.28660 4.47858 4.51713 4.65001 4.81008 4.84994 4.86745 4.91485 4.92762 5.05342 5.09766 5.11864 5.14785 5.19065 5.42602 5.44900 5.55345 5.59361 5.66590 5.69439 5.72048 5.74656 5.75441 5.77313 5.97054 6.05632 6.11268 6.15707 6.24561 6.31920 6.34841 6.37452 6.49641 6.63435 6.65934 6.88938 7.04663 7.24703 7.77435 7.79866 7.92971 8.51267 8.70591 9.62654 10.21158 10.57134 11.54388 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008599 B = 0.003395 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.411401 B = 8246.040756 C =10372.518971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.071 3.929 3 H 0.078 0.922 4 O -0.345 6.345 5 C 0.098 3.902 6 C -0.041 4.041 7 C -0.150 4.150 8 C 0.095 3.905 9 N -0.484 5.484 10 C 0.095 3.905 11 C -0.150 4.150 12 C 0.523 3.477 13 O -0.499 6.499 14 N -0.715 5.715 15 C 0.202 3.798 16 C -0.147 4.147 17 C 0.137 3.863 18 N -0.724 5.724 19 C -0.226 4.226 20 H 0.067 0.933 21 C -0.016 4.016 22 N -0.938 5.938 23 Si 0.904 3.096 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.287 1.287 27 C -0.143 4.143 28 C -0.163 4.163 29 C -0.183 4.183 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.137 0.863 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.136 0.864 39 H 0.393 0.607 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.019 0.981 44 H 0.059 0.941 45 H 0.381 0.619 46 H 0.252 0.748 47 H 0.108 0.892 48 H 0.089 0.911 49 H 0.086 0.914 50 H 0.088 0.912 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.438 14.274 10.791 21.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.010 3.990 3 H 0.096 0.904 4 O -0.263 6.263 5 C 0.021 3.979 6 C -0.049 4.049 7 C -0.170 4.170 8 C -0.062 4.062 9 N -0.193 5.193 10 C -0.062 4.062 11 C -0.170 4.170 12 C 0.308 3.692 13 O -0.372 6.372 14 N -0.369 5.369 15 C 0.117 3.883 16 C -0.205 4.205 17 C 0.009 3.991 18 N -0.368 5.368 19 C -0.357 4.357 20 H 0.085 0.915 21 C -0.211 4.211 22 N -0.588 5.588 23 Si 0.735 3.265 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.214 1.214 27 C -0.163 4.163 28 C -0.201 4.201 29 C -0.220 4.220 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.155 0.845 36 H 0.174 0.826 37 H 0.174 0.826 38 H 0.154 0.846 39 H 0.227 0.773 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.036 0.964 44 H 0.077 0.923 45 H 0.215 0.785 46 H 0.062 0.938 47 H 0.126 0.874 48 H 0.107 0.893 49 H 0.105 0.895 50 H 0.107 0.893 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.224 12.629 11.584 21.050 hybrid contribution -1.415 0.423 -0.851 1.705 sum 10.809 13.052 10.733 20.059 Atomic orbital electron populations 1.22211 0.92982 1.04933 1.02592 1.21998 0.95611 0.95586 0.85802 0.90374 1.88168 1.86561 1.33226 1.18341 1.21387 0.99899 0.91649 0.84952 1.19977 0.93650 0.96666 0.94637 1.22111 1.01132 0.98096 0.95679 1.22771 0.91950 0.95300 0.96154 1.67664 1.03403 1.19542 1.28708 1.22757 0.99668 0.93199 0.90595 1.22088 0.95858 0.99985 0.99020 1.19868 0.80000 0.85460 0.83869 1.90691 1.39057 1.21497 1.85911 1.45894 1.53756 1.31706 1.05508 1.20057 0.89352 0.94978 0.83958 1.21985 1.02808 0.99177 0.96521 1.21206 0.87039 0.91054 0.99764 1.42201 0.99465 1.05807 1.89368 1.19192 0.89787 0.85485 1.41242 0.91504 1.24635 0.96049 0.96806 1.03655 1.69629 1.03926 1.26423 1.58850 0.86303 0.78189 0.84144 0.77833 1.21423 1.21825 1.21434 1.22590 0.95123 0.95677 1.02903 1.22892 1.01869 1.03934 0.91376 1.22966 1.02268 0.95731 1.00997 0.90166 0.91934 0.90636 0.92022 0.91812 0.84520 0.82568 0.82618 0.84629 0.77291 0.92948 0.91023 0.90710 0.96369 0.92333 0.78522 0.93789 0.87370 0.89294 0.89501 0.89335 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 9.47 37.15 0.35 -1.87 16 2 C 0.07 0.95 3.13 -27.89 -0.09 0.86 16 3 H 0.08 0.76 7.79 -51.93 -0.40 0.35 16 4 O -0.35 -5.09 9.51 -55.09 -0.52 -5.62 16 5 C 0.10 1.02 5.92 36.01 0.21 1.23 16 6 C -0.04 -0.46 5.55 -104.31 -0.58 -1.04 16 7 C -0.15 -1.59 9.82 -39.44 -0.39 -1.97 16 8 C 0.09 1.01 11.18 -17.55 -0.20 0.82 16 9 N -0.48 -5.82 10.36 -13.25 -0.14 -5.96 16 10 C 0.09 1.00 11.18 -17.55 -0.20 0.80 16 11 C -0.15 -1.57 9.82 -39.44 -0.39 -1.95 16 12 C 0.52 8.75 4.21 -10.99 -0.05 8.70 16 13 O -0.50 -10.54 12.84 -14.31 -0.18 -10.72 16 14 N -0.72 -10.60 4.14 -47.61 -0.20 -10.80 16 15 C 0.20 3.25 0.55 -131.81 -0.07 3.17 16 16 C -0.15 -2.12 8.18 37.16 0.30 -1.82 16 17 C 0.14 2.95 4.81 -4.05 -0.02 2.93 16 18 N -0.72 -18.34 5.17 -59.91 -0.31 -18.65 16 19 C -0.23 -6.50 9.99 -15.06 -0.15 -6.65 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 22 N -0.94 -28.08 13.06 55.49 0.72 -27.36 16 23 Si 0.90 23.11 29.55 -169.99 -5.02 18.09 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 27 C -0.14 -2.04 4.89 -90.62 -0.44 -2.48 16 28 C -0.16 -2.16 8.62 -26.69 -0.23 -2.39 16 29 C -0.18 -2.05 9.68 -26.70 -0.26 -2.31 16 30 H 0.08 1.37 8.14 -51.92 -0.42 0.94 16 31 H 0.06 0.65 7.87 -51.93 -0.41 0.24 16 32 H 0.07 0.92 7.79 -51.93 -0.40 0.52 16 33 H 0.06 0.52 8.04 -51.93 -0.42 0.10 16 34 H 0.06 0.54 7.83 -51.93 -0.41 0.14 16 35 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 39 H 0.39 4.80 8.12 -40.82 -0.33 4.47 16 40 H 0.05 0.60 6.91 -51.93 -0.36 0.24 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.07 1.25 6.86 -51.93 -0.36 0.89 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 1.43 5.63 -51.93 -0.29 1.14 16 45 H 0.38 9.77 6.35 -40.82 -0.26 9.51 16 46 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.11 1.58 8.06 -51.93 -0.42 1.16 16 48 H 0.09 1.21 5.21 -51.93 -0.27 0.94 16 49 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 51 H 0.09 0.94 7.20 -51.93 -0.37 0.56 16 LS Contribution 411.21 15.07 6.20 6.20 Total: -1.00 -35.83 411.21 -9.79 -45.61 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -8.05 Total: 13.77 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.28 Total: -4.56 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: 0.08 Total: -62.77 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.71 Total: -16.34 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.83 -9.79 -45.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269634320.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.118 kcal (2) G-P(sol) polarization free energy of solvation -35.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds