Wall clock time and date at job start Wed Apr 1 2020 05:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.46954 * 2 1 4 4 O 1.42902 * 109.47067 * 119.99205 * 2 1 3 5 5 C 1.42896 * 114.00239 * 270.00481 * 4 2 1 6 6 C 1.50702 * 109.47296 * 180.02562 * 5 4 2 7 7 C 1.38654 * 120.78618 * 269.71856 * 6 5 4 8 8 C 1.38203 * 119.16109 * 179.79760 * 7 6 5 9 9 N 1.31877 * 120.76532 * 0.48478 * 8 7 6 10 10 C 1.31868 * 121.72097 * 359.74425 * 9 8 7 11 11 C 1.38200 * 120.77053 * 0.02562 * 10 9 8 12 12 C 1.50693 * 109.47220 * 239.99522 * 2 1 3 13 13 O 1.21287 * 120.00128 * 244.99959 * 12 2 1 14 14 N 1.34771 * 120.00118 * 65.00143 * 12 2 1 15 15 C 1.46507 * 120.00161 * 175.57380 * 14 12 2 16 16 C 1.53002 * 109.47163 * 174.05668 * 15 14 12 17 17 C 1.52997 * 109.46798 * 54.05832 * 15 14 12 18 18 N 1.46495 * 109.47427 * 60.00248 * 17 15 14 19 19 C 1.36939 * 120.00172 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99811 * 359.97438 * 19 18 17 21 21 C 1.38809 * 119.99946 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00196 * 359.97438 * 21 19 18 23 23 Si 1.86810 * 119.99866 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47068 * 59.99931 * 23 21 19 25 25 H 1.48498 * 109.46831 * 180.02562 * 23 21 19 26 26 H 1.48492 * 109.46967 * 299.99822 * 23 21 19 27 27 C 1.53001 * 109.47035 * 294.05711 * 15 14 12 28 28 C 1.53001 * 117.50020 * 2.15883 * 27 15 14 29 29 C 1.52995 * 117.49885 * 293.49972 * 27 15 14 30 30 H 1.09008 * 109.47344 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47771 * 300.00271 * 1 2 3 32 32 H 1.09003 * 109.47475 * 60.00423 * 1 2 3 33 33 H 1.08999 * 109.46960 * 299.99452 * 5 4 2 34 34 H 1.08998 * 109.47760 * 59.99947 * 5 4 2 35 35 H 1.07995 * 120.41969 * 359.97438 * 7 6 5 36 36 H 1.07995 * 119.62255 * 180.20409 * 8 7 6 37 37 H 1.07998 * 119.61338 * 180.02562 * 10 9 8 38 38 H 1.07998 * 120.42812 * 180.02562 * 11 10 9 39 39 H 0.97005 * 120.00250 * 355.57247 * 14 12 2 40 40 H 1.08994 * 109.46980 * 59.99902 * 16 15 14 41 41 H 1.08994 * 109.46821 * 180.02562 * 16 15 14 42 42 H 1.08998 * 109.46946 * 299.99918 * 16 15 14 43 43 H 1.09003 * 109.47209 * 180.02562 * 17 15 14 44 44 H 1.09004 * 109.47135 * 299.99558 * 17 15 14 45 45 H 0.96998 * 119.99727 * 359.97438 * 18 17 15 46 46 H 0.97001 * 120.00113 * 180.02562 * 22 21 19 47 47 H 1.09002 * 115.54817 * 147.82361 * 27 15 14 48 48 H 1.09000 * 117.49705 * 359.97438 * 28 27 15 49 49 H 1.08996 * 117.49708 * 145.01534 * 28 27 15 50 50 H 1.09004 * 117.49409 * 214.98210 * 29 27 15 51 51 H 1.08998 * 117.49996 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.1999 0.1831 2.2941 6 6 2.7013 -0.6279 3.4612 7 6 1.8147 -1.2039 4.3581 8 6 2.3111 -1.9445 5.4142 9 7 3.6105 -2.0977 5.5787 10 6 4.4827 -1.5606 4.7482 11 6 4.0602 -0.8108 3.6668 12 6 2.0323 -0.7105 -1.2303 13 8 2.6530 -1.7468 -1.1213 14 7 1.7919 -0.1944 -2.4519 15 6 2.3621 -0.8316 -3.6415 16 6 1.8211 -0.1445 -4.8970 17 6 1.9742 -2.3114 -3.6628 18 7 0.5147 -2.4333 -3.6957 19 6 -0.0686 -3.6721 -3.7186 20 1 0.5474 -4.5592 -3.7128 21 6 -1.4515 -3.7876 -3.7492 22 7 -2.2022 -2.7065 -3.7558 23 14 -2.2472 -5.4774 -3.7812 24 1 -1.8508 -6.2342 -2.5665 25 1 -3.7243 -5.3285 -3.8121 26 1 -1.7989 -6.2128 -4.9908 27 6 3.8864 -0.7042 -3.6072 28 6 4.5112 -0.0242 -2.3873 29 6 4.4811 0.6995 -3.7357 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 2.9318 0.9515 2.0450 34 1 1.2537 0.6549 2.5589 35 1 0.7496 -1.0779 4.2316 36 1 1.6271 -2.3992 6.1154 37 1 5.5394 -1.7082 4.9150 38 1 4.7793 -0.3738 2.9899 39 1 1.2413 0.5990 -2.5435 40 1 2.0973 0.9098 -4.8818 41 1 2.2449 -0.6189 -5.7820 42 1 0.7351 -0.2352 -4.9214 43 1 2.3988 -2.7857 -4.5476 44 1 2.3597 -2.8009 -2.7684 45 1 -0.0385 -1.6366 -3.7005 46 1 -3.1686 -2.7872 -3.7768 47 1 4.4373 -1.5278 -4.0615 48 1 3.8363 0.3328 -1.6094 49 1 5.4733 -0.4002 -2.0393 50 1 5.4235 0.7995 -4.2744 51 1 3.7865 1.5323 -3.8452 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269634320.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:42 Heat of formation + Delta-G solvation = -15.347672 kcal Electronic energy + Delta-G solvation = -31637.633965 eV Core-core repulsion = 27538.121660 eV Total energy + Delta-G solvation = -4099.512305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.69931 -41.10672 -39.39419 -37.93410 -36.56739 -34.97197 -34.44210 -33.38038 -32.16358 -32.00429 -30.76350 -27.87685 -27.64154 -25.70712 -25.13839 -24.42899 -23.10215 -22.99098 -22.90075 -21.71360 -20.29861 -19.27306 -18.57816 -18.09085 -17.47052 -17.41149 -17.01509 -16.83389 -16.55548 -16.17909 -16.10721 -15.67951 -15.34749 -15.02358 -14.89293 -14.78511 -14.59401 -14.53113 -14.15616 -13.81654 -13.51416 -13.48089 -13.27874 -13.25984 -13.00136 -12.95179 -12.79139 -12.51445 -12.38267 -12.31626 -12.21087 -12.15008 -11.97390 -11.76288 -11.19863 -11.09198 -10.93331 -10.80869 -10.75201 -10.48804 -10.17593 -10.10371 -9.89473 -8.88229 -7.94252 -5.18651 0.12782 0.18292 1.42948 1.45679 1.51561 1.76895 1.99447 2.54883 2.71096 2.96727 3.11776 3.38556 3.56375 3.65925 3.67266 3.75827 3.80356 3.94413 3.99925 4.03434 4.09058 4.10780 4.18848 4.21094 4.38429 4.38912 4.39691 4.42879 4.58556 4.66687 4.68716 4.77693 4.81727 4.86776 4.90273 4.93584 4.97511 4.99284 5.09788 5.22577 5.24005 5.31931 5.33910 5.35458 5.38921 5.47537 5.73806 5.76716 6.06215 6.29244 6.74662 6.97918 7.36512 7.47860 8.11901 8.41722 9.28316 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008599 B = 0.003395 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.411401 B = 8246.040756 C =10372.518971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.078 3.922 3 H 0.126 0.874 4 O -0.381 6.381 5 C 0.094 3.906 6 C -0.059 4.059 7 C -0.159 4.159 8 C 0.083 3.917 9 N -0.509 5.509 10 C 0.084 3.916 11 C -0.157 4.157 12 C 0.515 3.485 13 O -0.552 6.552 14 N -0.705 5.705 15 C 0.211 3.789 16 C -0.139 4.139 17 C 0.138 3.862 18 N -0.725 5.725 19 C -0.243 4.243 20 H 0.057 0.943 21 C -0.065 4.065 22 N -0.959 5.959 23 Si 0.963 3.037 24 H -0.289 1.289 25 H -0.288 1.288 26 H -0.279 1.279 27 C -0.168 4.168 28 C -0.170 4.170 29 C -0.145 4.145 30 H 0.030 0.970 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.151 0.849 36 H 0.177 0.823 37 H 0.178 0.822 38 H 0.152 0.848 39 H 0.409 0.591 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.049 0.951 43 H 0.010 0.990 44 H 0.027 0.973 45 H 0.378 0.622 46 H 0.251 0.749 47 H 0.096 0.904 48 H 0.086 0.914 49 H 0.084 0.916 50 H 0.107 0.893 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.838 16.815 10.726 23.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.017 3.983 3 H 0.143 0.857 4 O -0.300 6.300 5 C 0.019 3.981 6 C -0.067 4.067 7 C -0.179 4.179 8 C -0.073 4.073 9 N -0.219 5.219 10 C -0.073 4.073 11 C -0.176 4.176 12 C 0.302 3.698 13 O -0.429 6.429 14 N -0.359 5.359 15 C 0.125 3.875 16 C -0.197 4.197 17 C 0.011 3.989 18 N -0.369 5.369 19 C -0.376 4.376 20 H 0.075 0.925 21 C -0.258 4.258 22 N -0.610 5.610 23 Si 0.793 3.207 24 H -0.216 1.216 25 H -0.213 1.213 26 H -0.206 1.206 27 C -0.187 4.187 28 C -0.207 4.207 29 C -0.181 4.181 30 H 0.049 0.951 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.169 0.831 36 H 0.194 0.806 37 H 0.195 0.805 38 H 0.169 0.831 39 H 0.245 0.755 40 H 0.110 0.890 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.028 0.972 44 H 0.045 0.955 45 H 0.212 0.788 46 H 0.060 0.940 47 H 0.114 0.886 48 H 0.104 0.896 49 H 0.103 0.897 50 H 0.126 0.874 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.629 15.208 11.508 22.874 hybrid contribution -1.488 -0.412 -0.795 1.737 sum 11.141 14.796 10.713 21.397 Atomic orbital electron populations 1.22175 0.93034 1.02231 1.04680 1.22012 0.95272 0.97060 0.83964 0.85657 1.88129 1.86784 1.35454 1.19603 1.21625 1.01732 0.91404 0.83358 1.20275 0.94131 0.97138 0.95142 1.22358 1.01979 0.97940 0.95609 1.23172 0.92030 0.95382 0.96739 1.67691 1.04180 1.20432 1.29633 1.23184 1.00674 0.92936 0.90474 1.22342 0.96186 0.99906 0.99212 1.20635 0.78996 0.84945 0.85221 1.90670 1.41570 1.23885 1.86738 1.45820 1.53420 1.31809 1.04833 1.19826 0.90996 0.91419 0.85270 1.21921 1.00918 1.01393 0.95425 1.21221 0.84675 0.95376 0.97662 1.42229 1.01014 1.04602 1.89033 1.19456 0.90328 0.86601 1.41169 0.92516 1.25326 0.96422 1.00180 1.03878 1.69747 1.03854 1.27916 1.59501 0.85371 0.77276 0.80313 0.77763 1.21598 1.21339 1.20552 1.22440 0.93533 0.97832 1.04938 1.22901 1.01521 1.04420 0.91899 1.23070 1.02788 0.93679 0.98595 0.95104 0.88684 0.89746 0.89652 0.89677 0.83093 0.80591 0.80468 0.83050 0.75474 0.88991 0.91092 0.93208 0.97193 0.95501 0.78807 0.94005 0.88581 0.89553 0.89747 0.87420 0.87200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 9.47 71.98 0.68 -3.42 16 2 C 0.08 1.94 3.13 29.84 0.09 2.03 16 3 H 0.13 1.92 7.79 -2.39 -0.02 1.90 16 4 O -0.38 -10.89 9.51 -129.99 -1.24 -12.13 16 5 C 0.09 1.76 5.92 71.24 0.42 2.18 16 6 C -0.06 -1.25 5.55 -19.66 -0.11 -1.35 16 7 C -0.16 -3.26 9.82 22.36 0.22 -3.04 16 8 C 0.08 1.74 11.18 84.68 0.95 2.69 16 9 N -0.51 -12.16 10.36 -195.85 -2.03 -14.19 16 10 C 0.08 1.72 11.18 84.68 0.95 2.67 16 11 C -0.16 -3.15 9.82 22.36 0.22 -2.93 16 12 C 0.52 17.14 4.21 87.66 0.37 17.51 16 13 O -0.55 -24.17 12.84 15.94 0.20 -23.97 16 14 N -0.70 -20.24 4.14 -422.92 -1.75 -21.99 16 15 C 0.21 6.70 0.55 3.60 0.00 6.71 16 16 C -0.14 -3.80 8.18 71.98 0.59 -3.21 16 17 C 0.14 6.17 4.81 86.38 0.42 6.59 16 18 N -0.73 -37.95 5.17 -343.46 -1.78 -39.73 16 19 C -0.24 -14.45 9.99 84.03 0.84 -13.61 16 20 H 0.06 3.40 7.83 -2.91 -0.02 3.38 16 21 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 22 N -0.96 -58.02 13.06 21.65 0.28 -57.73 16 23 Si 0.96 48.11 29.55 68.60 2.03 50.14 16 24 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 25 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 27 C -0.17 -4.62 4.89 -10.79 -0.05 -4.67 16 28 C -0.17 -4.21 8.62 30.62 0.26 -3.95 16 29 C -0.14 -2.74 9.68 30.62 0.30 -2.44 16 30 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.09 1.73 7.87 -2.39 -0.02 1.71 16 32 H 0.08 1.92 7.79 -2.39 -0.02 1.90 16 33 H 0.09 1.16 8.04 -2.39 -0.02 1.14 16 34 H 0.09 1.19 7.83 -2.39 -0.02 1.17 16 35 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 36 H 0.18 2.71 8.06 -2.91 -0.02 2.68 16 37 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.41 9.10 8.12 -92.70 -0.75 8.34 16 40 H 0.09 1.77 6.91 -2.39 -0.02 1.75 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.05 1.62 6.86 -2.39 -0.02 1.60 16 43 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.03 1.40 5.63 -2.38 -0.01 1.39 16 45 H 0.38 19.89 6.35 -92.71 -0.59 19.30 16 46 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 47 H 0.10 2.84 8.06 -2.39 -0.02 2.82 16 48 H 0.09 2.18 5.21 -2.39 -0.01 2.17 16 49 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 50 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 51 H 0.11 1.70 7.20 -2.39 -0.02 1.68 16 Total: -1.00 -81.50 411.21 1.94 -79.56 By element: Atomic # 1 Polarization: 42.05 SS G_CDS: -0.39 Total: 41.66 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 6.61 Total: -1.62 kcal Atomic # 7 Polarization: -128.37 SS G_CDS: -5.27 Total: -133.64 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -1.03 Total: -36.10 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -81.50 1.94 -79.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269634320.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.216 kcal (2) G-P(sol) polarization free energy of solvation -81.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds