Wall clock time and date at job start Wed Apr 1 2020 05:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46592 * 2 1 4 4 O 1.42899 * 109.47016 * 240.00661 * 2 1 3 5 5 C 1.42897 * 114.00271 * 89.99682 * 4 2 1 6 6 C 1.50698 * 109.47000 * 179.97438 * 5 4 2 7 7 C 1.38647 * 120.79403 * 269.72006 * 6 5 4 8 8 C 1.38206 * 119.16315 * 179.80155 * 7 6 5 9 9 N 1.31869 * 120.76442 * 0.48304 * 8 7 6 10 10 C 1.31875 * 121.72536 * 359.74838 * 9 8 7 11 11 C 1.38207 * 120.76289 * 0.02562 * 10 9 8 12 12 C 1.50698 * 109.46950 * 120.00094 * 2 1 3 13 13 O 1.21284 * 119.99594 * 115.00764 * 12 2 1 14 14 N 1.34777 * 120.00165 * 295.00002 * 12 2 1 15 15 C 1.46500 * 119.99704 * 185.19811 * 14 12 2 16 16 C 1.53002 * 109.47122 * 294.92766 * 15 14 12 17 17 C 1.52999 * 109.47206 * 54.93174 * 15 14 12 18 18 N 1.46495 * 109.47205 * 60.00175 * 17 15 14 19 19 C 1.36937 * 119.99960 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00371 * 0.02562 * 19 18 17 21 21 C 1.38821 * 119.99831 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00295 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99921 * 180.02562 * 21 19 18 24 24 H 1.48509 * 109.46935 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47328 * 119.99798 * 23 21 19 26 26 H 1.48496 * 109.47048 * 240.00153 * 23 21 19 27 27 C 1.53004 * 109.46709 * 174.93181 * 15 14 12 28 28 C 1.52998 * 117.51995 * 345.38126 * 27 15 14 29 29 C 1.52997 * 117.50033 * 54.01659 * 27 15 14 30 30 H 1.09004 * 109.47436 * 59.99702 * 1 2 3 31 31 H 1.08998 * 109.47034 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47467 * 299.99687 * 1 2 3 33 33 H 1.08990 * 109.47240 * 299.99933 * 5 4 2 34 34 H 1.09008 * 109.46862 * 60.00031 * 5 4 2 35 35 H 1.07997 * 120.41746 * 0.02562 * 7 6 5 36 36 H 1.07998 * 119.61828 * 180.20887 * 8 7 6 37 37 H 1.08002 * 119.61365 * 179.97438 * 10 9 8 38 38 H 1.07997 * 120.41432 * 179.97438 * 11 10 9 39 39 H 0.97000 * 119.99874 * 5.19657 * 14 12 2 40 40 H 1.08994 * 109.47340 * 300.00748 * 16 15 14 41 41 H 1.09003 * 109.46641 * 60.00854 * 16 15 14 42 42 H 1.09005 * 109.46896 * 179.97438 * 16 15 14 43 43 H 1.09006 * 109.46994 * 179.97438 * 17 15 14 44 44 H 1.08997 * 109.47311 * 299.99659 * 17 15 14 45 45 H 0.97003 * 120.00448 * 359.97438 * 18 17 15 46 46 H 0.96991 * 120.00387 * 180.02562 * 22 21 19 47 47 H 1.09000 * 115.54869 * 199.68481 * 27 15 14 48 48 H 1.08994 * 117.50211 * 214.96780 * 28 27 15 49 49 H 1.08998 * 117.49676 * 359.97438 * 28 27 15 50 50 H 1.08998 * 117.50055 * 359.96921 * 29 27 15 51 51 H 1.08999 * 117.50368 * 144.99494 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.2000 0.1831 -2.2941 6 6 2.7013 -0.6280 -3.4610 7 6 4.0603 -0.8063 -3.6699 8 6 4.4828 -1.5600 -4.7486 9 7 3.6105 -2.0979 -5.5785 10 6 2.3111 -1.9454 -5.4135 11 6 1.8146 -1.2087 -4.3548 12 6 2.0323 -0.7104 1.2304 13 8 2.6531 -1.7466 1.1214 14 7 1.7919 -0.1942 2.4520 15 6 2.3759 -0.8215 3.6401 16 6 1.7890 -2.2234 3.8174 17 6 3.8931 -0.9215 3.4704 18 7 4.4550 0.4207 3.3009 19 6 5.8043 0.5818 3.1311 20 1 6.4541 -0.2807 3.1219 21 6 6.3366 1.8536 2.9699 22 7 5.5446 2.9047 2.9797 23 14 8.1771 2.0733 2.7377 24 1 8.8413 0.7452 2.7640 25 1 8.4363 2.7310 1.4318 26 1 8.7169 2.9179 3.8332 27 6 2.0553 0.0252 4.8735 28 6 1.5432 1.4480 4.6406 29 6 0.5863 0.3621 5.1368 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.2538 0.6548 -2.5588 34 1 2.9319 0.9515 -2.0449 35 1 4.7797 -0.3648 -2.9961 36 1 5.5395 -1.7064 -4.9163 37 1 1.6270 -2.4008 -6.1144 38 1 0.7493 -1.0870 -4.2253 39 1 1.2322 0.5926 2.5444 40 1 0.7081 -2.1521 3.9382 41 1 2.0175 -2.8266 2.9387 42 1 2.2239 -2.6902 4.7012 43 1 4.3277 -1.3878 4.3547 44 1 4.1215 -1.5247 2.5918 45 1 3.8714 1.1955 3.3088 46 1 5.9165 3.7934 2.8666 47 1 2.6958 -0.1436 5.7391 48 1 1.8467 2.2151 5.3529 49 1 1.4350 1.7812 3.6084 50 1 -0.1518 -0.0191 4.4311 51 1 0.2603 0.4148 6.1756 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269634322.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:50 Heat of formation + Delta-G solvation = -19.239628 kcal Electronic energy + Delta-G solvation = -31577.653932 eV Core-core repulsion = 27477.972859 eV Total energy + Delta-G solvation = -4099.681073 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.62811 -41.12789 -39.56088 -38.26542 -36.27377 -34.86928 -34.51551 -33.41211 -32.18458 -32.16731 -30.98956 -27.90783 -27.48654 -25.52336 -24.69601 -24.44398 -23.77749 -23.12133 -22.99874 -21.71872 -20.25202 -19.18550 -18.88906 -18.06453 -17.52080 -17.49066 -16.92976 -16.59589 -16.38227 -16.25589 -16.02098 -15.68766 -15.55586 -15.20055 -15.04388 -14.79366 -14.57550 -14.28013 -14.07428 -14.01578 -13.77938 -13.63265 -13.34883 -13.21543 -12.97527 -12.91703 -12.80303 -12.53288 -12.50877 -12.33947 -12.25309 -12.14413 -12.00213 -11.79143 -11.13005 -11.10052 -10.97002 -10.87282 -10.78153 -10.51190 -10.31324 -10.12288 -9.90567 -8.92045 -7.94980 -5.19918 0.10014 0.16257 1.42855 1.43710 1.53467 1.67967 1.95083 2.54112 2.68670 2.96278 3.06813 3.36983 3.53280 3.56859 3.67288 3.72594 3.78881 3.83707 3.93915 3.98976 4.07677 4.10563 4.14033 4.16910 4.32241 4.35121 4.39595 4.58843 4.64447 4.66149 4.70092 4.77789 4.80586 4.84831 4.86518 4.86982 4.95731 4.96298 5.07427 5.18425 5.20928 5.26915 5.32090 5.32669 5.36127 5.47869 5.69544 5.71865 5.98893 6.28350 6.64948 6.95638 7.35365 7.37055 8.11259 8.43856 9.27808 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008080 B = 0.003661 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3464.395720 B = 7646.708126 C =10056.655968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.069 3.931 3 H 0.093 0.907 4 O -0.377 6.377 5 C 0.096 3.904 6 C -0.057 4.057 7 C -0.168 4.168 8 C 0.086 3.914 9 N -0.506 5.506 10 C 0.088 3.912 11 C -0.149 4.149 12 C 0.514 3.486 13 O -0.559 6.559 14 N -0.704 5.704 15 C 0.210 3.790 16 C -0.145 4.145 17 C 0.140 3.860 18 N -0.727 5.727 19 C -0.244 4.244 20 H 0.058 0.942 21 C -0.064 4.064 22 N -0.958 5.958 23 Si 0.962 3.038 24 H -0.277 1.277 25 H -0.292 1.292 26 H -0.289 1.289 27 C -0.161 4.161 28 C -0.181 4.181 29 C -0.144 4.144 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.131 0.869 36 H 0.172 0.828 37 H 0.187 0.813 38 H 0.165 0.835 39 H 0.407 0.593 40 H 0.080 0.920 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.016 0.984 44 H 0.019 0.981 45 H 0.382 0.618 46 H 0.251 0.749 47 H 0.102 0.898 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.110 0.890 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.937 -3.542 -7.681 19.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.008 3.992 3 H 0.111 0.889 4 O -0.295 6.295 5 C 0.020 3.980 6 C -0.065 4.065 7 C -0.188 4.188 8 C -0.070 4.070 9 N -0.216 5.216 10 C -0.069 4.069 11 C -0.168 4.168 12 C 0.300 3.700 13 O -0.437 6.437 14 N -0.360 5.360 15 C 0.124 3.876 16 C -0.203 4.203 17 C 0.012 3.988 18 N -0.370 5.370 19 C -0.376 4.376 20 H 0.076 0.924 21 C -0.257 4.257 22 N -0.609 5.609 23 Si 0.792 3.208 24 H -0.202 1.202 25 H -0.219 1.219 26 H -0.216 1.216 27 C -0.179 4.179 28 C -0.218 4.218 29 C -0.181 4.181 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.149 0.851 36 H 0.189 0.811 37 H 0.204 0.796 38 H 0.183 0.817 39 H 0.247 0.753 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.034 0.966 44 H 0.037 0.963 45 H 0.216 0.784 46 H 0.060 0.940 47 H 0.120 0.880 48 H 0.109 0.891 49 H 0.110 0.890 50 H 0.129 0.871 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.968 -5.027 -8.477 19.622 hybrid contribution 1.189 1.621 0.792 2.161 sum -15.779 -3.406 -7.684 17.878 Atomic orbital electron populations 1.22210 0.90321 1.03883 1.05202 1.22067 0.97189 0.96021 0.83949 0.88896 1.88051 1.87187 1.34887 1.19410 1.21566 1.01541 0.91273 0.83648 1.20213 0.93840 0.97153 0.95316 1.22299 0.96667 1.00365 0.99420 1.23036 1.00639 0.92968 0.90357 1.67707 1.04441 1.20361 1.29091 1.23324 0.91823 0.95147 0.96607 1.22370 1.02106 0.97350 0.94997 1.20766 0.78940 0.85013 0.85244 1.90632 1.40947 1.25163 1.86952 1.46014 1.52290 1.32701 1.05008 1.19862 0.91113 0.93275 0.83372 1.22012 1.01678 0.94448 1.02198 1.21152 0.92373 0.87748 0.97483 1.42258 1.04295 1.03143 1.87327 1.19553 0.85657 0.92267 1.40118 0.92367 1.25319 1.01361 0.95231 1.03755 1.69765 1.34688 0.97550 1.58901 0.85236 0.81199 0.77359 0.76975 1.20193 1.21883 1.21580 1.22271 0.99213 0.98288 0.98168 1.22917 1.04631 0.92023 1.02231 1.23107 0.90919 1.00516 1.03549 0.88904 0.91762 0.88963 0.88437 0.92394 0.85091 0.81065 0.79577 0.81750 0.75347 0.90074 0.93138 0.91051 0.96577 0.96314 0.78362 0.94011 0.87954 0.89100 0.88956 0.87138 0.86938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.47 71.98 0.68 -1.99 16 2 C 0.07 1.85 3.13 29.85 0.09 1.94 16 3 H 0.09 2.38 7.79 -2.38 -0.02 2.37 16 4 O -0.38 -11.52 9.51 -129.99 -1.24 -12.76 16 5 C 0.10 2.24 5.92 71.24 0.42 2.67 16 6 C -0.06 -1.39 5.55 -19.67 -0.11 -1.50 16 7 C -0.17 -4.42 9.82 22.36 0.22 -4.20 16 8 C 0.09 2.13 11.18 84.68 0.95 3.08 16 9 N -0.51 -12.66 10.36 -195.84 -2.03 -14.69 16 10 C 0.09 1.75 11.18 84.68 0.95 2.70 16 11 C -0.15 -2.90 9.82 22.36 0.22 -2.68 16 12 C 0.51 17.84 6.59 87.66 0.58 18.42 16 13 O -0.56 -24.69 12.75 15.95 0.20 -24.49 16 14 N -0.70 -21.14 4.45 -422.91 -1.88 -23.02 16 15 C 0.21 6.85 0.52 3.61 0.00 6.85 16 16 C -0.14 -4.15 8.37 71.98 0.60 -3.54 16 17 C 0.14 6.25 4.89 86.38 0.42 6.68 16 18 N -0.73 -37.62 5.22 -343.46 -1.79 -39.42 16 19 C -0.24 -14.23 9.99 84.04 0.84 -13.39 16 20 H 0.06 3.44 7.83 -2.91 -0.02 3.41 16 21 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 22 N -0.96 -57.05 13.06 21.65 0.28 -56.76 16 23 Si 0.96 47.22 29.55 68.60 2.03 49.25 16 24 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 25 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 27 C -0.16 -4.57 4.48 -10.79 -0.05 -4.62 16 28 C -0.18 -4.72 8.98 30.60 0.27 -4.45 16 29 C -0.14 -2.80 9.53 30.60 0.29 -2.50 16 30 H 0.09 1.11 7.87 -2.38 -0.02 1.09 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 1.16 7.77 -2.39 -0.02 1.14 16 33 H 0.10 1.55 7.83 -2.39 -0.02 1.53 16 34 H 0.06 1.44 8.04 -2.38 -0.02 1.42 16 35 H 0.13 3.53 8.06 -2.91 -0.02 3.50 16 36 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 37 H 0.19 2.35 8.06 -2.91 -0.02 2.32 16 38 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 39 H 0.41 9.88 5.25 -92.71 -0.49 9.39 16 40 H 0.08 1.84 7.71 -2.39 -0.02 1.82 16 41 H 0.05 1.72 6.37 -2.39 -0.02 1.70 16 42 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.02 0.97 5.99 -2.39 -0.01 0.96 16 45 H 0.38 19.79 6.43 -92.71 -0.60 19.19 16 46 H 0.25 14.44 8.31 -92.72 -0.77 13.67 16 47 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 48 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 49 H 0.09 2.39 5.96 -2.39 -0.01 2.38 16 50 H 0.11 1.75 7.99 -2.39 -0.02 1.73 16 51 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -78.84 413.37 2.28 -76.56 By element: Atomic # 1 Polarization: 45.25 SS G_CDS: -0.14 Total: 45.11 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 6.85 Total: 0.22 kcal Atomic # 7 Polarization: -128.47 SS G_CDS: -5.42 Total: -133.89 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -1.03 Total: -37.25 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -78.84 2.28 -76.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269634322.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.322 kcal (2) G-P(sol) polarization free energy of solvation -78.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds