Wall clock time and date at job start Wed Apr 1 2020 05:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08994 * 109.47042 * 2 1 4 4 O 1.42902 * 109.47026 * 240.00360 * 2 1 3 5 5 C 1.42902 * 113.99959 * 89.99693 * 4 2 1 6 6 C 1.50693 * 109.47063 * 179.97438 * 5 4 2 7 7 C 1.38660 * 120.79011 * 269.72144 * 6 5 4 8 8 C 1.38206 * 119.16017 * 179.79708 * 7 6 5 9 9 N 1.31879 * 120.76520 * 0.49032 * 8 7 6 10 10 C 1.31869 * 121.72134 * 359.73835 * 9 8 7 11 11 C 1.38203 * 120.77039 * 0.02612 * 10 9 8 12 12 C 1.50695 * 109.46896 * 120.00515 * 2 1 3 13 13 O 1.21283 * 120.00239 * 120.00052 * 12 2 1 14 14 N 1.34779 * 120.00461 * 299.99901 * 12 2 1 15 15 C 1.46500 * 120.00411 * 175.70850 * 14 12 2 16 16 C 1.52998 * 109.46976 * 174.06130 * 15 14 12 17 17 C 1.53004 * 109.46999 * 54.06074 * 15 14 12 18 18 N 1.46497 * 109.46886 * 59.99820 * 17 15 14 19 19 C 1.36942 * 119.99774 * 179.97438 * 18 17 15 20 20 H 1.07994 * 119.99884 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00008 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99957 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 120.00081 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46572 * 90.00571 * 23 21 19 25 25 H 1.48497 * 109.47307 * 210.00204 * 23 21 19 26 26 H 1.48501 * 109.47197 * 330.00745 * 23 21 19 27 27 C 1.53001 * 109.46984 * 294.06040 * 15 14 12 28 28 C 1.53002 * 117.49942 * 2.18022 * 27 15 14 29 29 C 1.52998 * 117.49774 * 293.51753 * 27 15 14 30 30 H 1.09000 * 109.46858 * 59.99558 * 1 2 3 31 31 H 1.09002 * 109.46551 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46773 * 299.99483 * 1 2 3 33 33 H 1.08996 * 109.47339 * 300.00425 * 5 4 2 34 34 H 1.09004 * 109.46582 * 59.99989 * 5 4 2 35 35 H 1.07996 * 120.41865 * 0.02562 * 7 6 5 36 36 H 1.08001 * 119.61875 * 180.20667 * 8 7 6 37 37 H 1.08004 * 119.60995 * 179.97438 * 10 9 8 38 38 H 1.07996 * 120.41841 * 179.97438 * 11 10 9 39 39 H 0.97001 * 119.99454 * 355.71070 * 14 12 2 40 40 H 1.09001 * 109.47193 * 59.99944 * 16 15 14 41 41 H 1.08994 * 109.47174 * 180.02562 * 16 15 14 42 42 H 1.09004 * 109.46905 * 299.99717 * 16 15 14 43 43 H 1.08994 * 109.46997 * 179.97438 * 17 15 14 44 44 H 1.08997 * 109.46690 * 300.00054 * 17 15 14 45 45 H 0.97003 * 120.00523 * 0.02562 * 18 17 15 46 46 H 0.97004 * 119.99938 * 179.97438 * 22 21 19 47 47 H 1.08999 * 115.54605 * 147.84414 * 27 15 14 48 48 H 1.09002 * 117.49640 * 359.97438 * 28 27 15 49 49 H 1.08998 * 117.49582 * 145.02031 * 28 27 15 50 50 H 1.09000 * 117.49787 * 214.98120 * 29 27 15 51 51 H 1.08997 * 117.50054 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2001 0.1831 -2.2941 6 6 2.7014 -0.6280 -3.4611 7 6 4.0606 -0.8062 -3.6699 8 6 4.4830 -1.5600 -4.7485 9 7 3.6107 -2.0979 -5.5785 10 6 2.3113 -1.9454 -5.4135 11 6 1.8147 -1.2088 -4.3548 12 6 2.0324 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1191 14 7 1.7068 -0.2502 2.4546 15 6 2.1157 -0.9931 3.6492 16 6 1.7540 -0.1881 4.8990 17 6 3.6275 -1.2260 3.6123 18 7 4.3196 0.0647 3.5791 19 6 5.6879 0.1071 3.5433 20 1 6.2567 -0.8109 3.5400 21 6 6.3439 1.3301 3.5124 22 7 7.6590 1.3708 3.4775 23 14 5.3601 2.9181 3.5189 24 1 5.1351 3.3552 4.9202 25 1 6.1118 3.9691 2.7872 26 1 4.0512 2.6923 2.8546 27 6 1.3927 -2.3411 3.6838 28 6 0.4695 -2.6779 2.5111 29 6 -0.1250 -2.3239 3.8766 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.2538 0.6548 -2.5588 34 1 2.9320 0.9515 -2.0449 35 1 4.7798 -0.3647 -2.9960 36 1 5.5398 -1.7064 -4.9162 37 1 1.6273 -2.4008 -6.1144 38 1 0.7495 -1.0872 -4.2253 39 1 1.2017 0.5730 2.5446 40 1 0.6770 -0.0222 4.9252 41 1 2.0586 -0.7406 5.7878 42 1 2.2691 0.7722 4.8743 43 1 3.9318 -1.7783 4.5013 44 1 3.8851 -1.7994 2.7219 45 1 3.8088 0.8894 3.5832 46 1 8.1173 2.2255 3.4555 47 1 1.9486 -3.1611 4.1383 48 1 0.3770 -1.9390 1.7151 49 1 0.4178 -3.7196 2.1945 50 1 -0.5677 -3.1329 4.4577 51 1 -0.6083 -1.3524 3.9792 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269634323.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:56 Heat of formation + Delta-G solvation = 12.775007 kcal Electronic energy + Delta-G solvation = -31779.495151 eV Core-core repulsion = 27681.202337 eV Total energy + Delta-G solvation = -4098.292814 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.63725 -40.27083 -38.41832 -36.82626 -35.10964 -33.75176 -33.37849 -32.03595 -31.36039 -30.82254 -29.65828 -27.07817 -26.36279 -24.46570 -23.61972 -23.50891 -22.23442 -22.14441 -21.20882 -20.61521 -19.19588 -17.80238 -17.65327 -17.06495 -16.63231 -16.49496 -16.08268 -15.75343 -15.36265 -15.11054 -14.53748 -14.39071 -14.20213 -13.93057 -13.81480 -13.68357 -13.58204 -13.30220 -12.91581 -12.84827 -12.62951 -12.36274 -12.24079 -12.12405 -11.95495 -11.72743 -11.61929 -11.46327 -11.12927 -11.03813 -10.88198 -10.85057 -10.22083 -10.18947 -10.06782 -9.90548 -9.87055 -9.65193 -9.55270 -9.29450 -9.20219 -8.75596 -8.67360 -7.10914 -5.71534 -3.04582 0.95899 0.99792 2.90451 2.93969 3.30292 3.34369 3.41419 3.58782 3.89094 3.97144 4.31220 4.47727 4.51145 4.59878 4.67137 4.71770 4.75105 4.86564 4.92396 4.95511 5.02466 5.07779 5.09708 5.19003 5.28406 5.30852 5.41183 5.46169 5.47861 5.56911 5.60567 5.63603 5.68103 5.70232 5.77086 5.80549 5.93960 6.05749 6.09812 6.14954 6.20299 6.26745 6.38230 6.51135 6.52847 6.78654 6.92564 7.10904 7.76882 7.80086 8.07343 8.47280 8.56506 9.27466 9.99337 10.20466 11.47721 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008448 B = 0.003747 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3313.495524 B = 7471.806132 C = 9597.824798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.066 3.934 3 H 0.086 0.914 4 O -0.345 6.345 5 C 0.097 3.903 6 C -0.042 4.042 7 C -0.145 4.145 8 C 0.097 3.903 9 N -0.483 5.483 10 C 0.092 3.908 11 C -0.153 4.153 12 C 0.521 3.479 13 O -0.492 6.492 14 N -0.720 5.720 15 C 0.198 3.802 16 C -0.148 4.148 17 C 0.142 3.858 18 N -0.749 5.749 19 C -0.230 4.230 20 H 0.089 0.911 21 C 0.000 4.000 22 N -0.937 5.937 23 Si 0.883 3.117 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.144 4.144 28 C -0.166 4.166 29 C -0.182 4.182 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.140 0.860 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.134 0.866 39 H 0.392 0.608 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.029 0.971 44 H 0.066 0.934 45 H 0.356 0.644 46 H 0.257 0.743 47 H 0.110 0.890 48 H 0.095 0.905 49 H 0.087 0.913 50 H 0.089 0.911 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.611 -1.819 -9.959 22.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.005 3.995 3 H 0.104 0.896 4 O -0.263 6.263 5 C 0.021 3.979 6 C -0.050 4.050 7 C -0.165 4.165 8 C -0.059 4.059 9 N -0.193 5.193 10 C -0.065 4.065 11 C -0.173 4.173 12 C 0.306 3.694 13 O -0.364 6.364 14 N -0.374 5.374 15 C 0.113 3.887 16 C -0.206 4.206 17 C 0.015 3.985 18 N -0.395 5.395 19 C -0.360 4.360 20 H 0.107 0.893 21 C -0.195 4.195 22 N -0.586 5.586 23 Si 0.714 3.286 24 H -0.212 1.212 25 H -0.219 1.219 26 H -0.209 1.209 27 C -0.164 4.164 28 C -0.204 4.204 29 C -0.219 4.219 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.158 0.842 36 H 0.176 0.824 37 H 0.173 0.827 38 H 0.152 0.848 39 H 0.226 0.774 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.047 0.953 44 H 0.084 0.916 45 H 0.189 0.811 46 H 0.068 0.932 47 H 0.128 0.872 48 H 0.113 0.887 49 H 0.106 0.894 50 H 0.107 0.893 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.508 -3.337 -10.769 22.531 hybrid contribution -1.136 2.487 0.832 2.858 sum -20.644 -0.849 -9.936 22.926 Atomic orbital electron populations 1.22287 0.93879 1.03710 1.02955 1.21983 0.94625 0.96835 0.86080 0.89599 1.88119 1.86614 1.33233 1.18302 1.21419 0.99982 0.91831 0.84686 1.19952 0.93706 0.96708 0.94650 1.22211 0.96028 0.99391 0.98896 1.22812 0.99784 0.92928 0.90422 1.67670 1.03348 1.19633 1.28641 1.22735 0.92028 0.95613 0.96125 1.22041 1.00810 0.98530 0.95951 1.19902 0.80490 0.85274 0.83782 1.90711 1.34381 1.25490 1.85866 1.45962 1.58541 1.27667 1.05276 1.20122 0.95614 0.89240 0.83746 1.22002 1.00683 1.00939 0.96975 1.21191 0.87009 0.89626 1.00700 1.42591 1.03982 1.01833 1.91112 1.19088 0.80877 0.94538 1.41520 0.89299 1.24635 0.95216 0.96832 1.02787 1.69698 1.06026 1.24490 1.58392 0.86575 0.79256 0.85180 0.77618 1.21195 1.21889 1.20851 1.22546 0.91561 0.98660 1.03595 1.23010 1.03602 1.01995 0.91749 1.22959 0.95932 1.02431 1.00570 0.91415 0.90942 0.90930 0.91931 0.91535 0.84185 0.82389 0.82718 0.84790 0.77421 0.92595 0.90531 0.91599 0.95320 0.91593 0.81060 0.93238 0.87177 0.88690 0.89437 0.89274 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 8.96 37.16 0.33 -1.14 16 2 C 0.07 0.83 3.14 -27.88 -0.09 0.74 16 3 H 0.09 0.97 7.79 -51.93 -0.40 0.56 16 4 O -0.34 -4.92 9.50 -55.14 -0.52 -5.44 16 5 C 0.10 1.07 5.92 36.00 0.21 1.28 16 6 C -0.04 -0.49 5.55 -104.32 -0.58 -1.07 16 7 C -0.15 -1.75 9.82 -39.44 -0.39 -2.14 16 8 C 0.10 1.14 11.18 -17.54 -0.20 0.94 16 9 N -0.48 -5.99 10.36 -13.25 -0.14 -6.13 16 10 C 0.09 0.95 11.18 -17.55 -0.20 0.76 16 11 C -0.15 -1.54 9.82 -39.44 -0.39 -1.93 16 12 C 0.52 8.28 4.47 -10.99 -0.05 8.23 16 13 O -0.49 -10.04 12.83 -14.35 -0.18 -10.22 16 14 N -0.72 -10.00 4.03 -47.61 -0.19 -10.19 16 15 C 0.20 3.00 0.55 -131.82 -0.07 2.92 16 16 C -0.15 -1.94 8.18 37.16 0.30 -1.64 16 17 C 0.14 2.91 4.81 -4.04 -0.02 2.90 16 18 N -0.75 -17.90 4.98 -59.91 -0.30 -18.20 16 19 C -0.23 -6.67 10.47 -15.06 -0.16 -6.83 16 20 H 0.09 2.82 8.06 -52.49 -0.42 2.39 16 21 C 0.00 0.01 5.50 -17.43 -0.10 -0.09 16 22 N -0.94 -29.90 13.97 55.49 0.78 -29.13 16 23 Si 0.88 21.94 27.74 -169.99 -4.71 17.23 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 27 C -0.14 -1.95 4.89 -90.62 -0.44 -2.40 16 28 C -0.17 -2.13 8.62 -26.69 -0.23 -2.36 16 29 C -0.18 -1.94 9.68 -26.69 -0.26 -2.20 16 30 H 0.07 0.47 7.87 -51.93 -0.41 0.06 16 31 H 0.07 0.69 7.26 -51.93 -0.38 0.31 16 32 H 0.07 0.50 7.67 -51.93 -0.40 0.10 16 33 H 0.06 0.51 7.83 -51.93 -0.41 0.10 16 34 H 0.07 0.71 8.04 -51.93 -0.42 0.30 16 35 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.16 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.16 1.13 8.06 -52.48 -0.42 0.71 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.39 4.30 8.04 -40.82 -0.33 3.97 16 40 H 0.06 0.57 6.91 -51.93 -0.36 0.21 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 0.96 6.86 -51.93 -0.36 0.61 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 1.55 5.64 -51.93 -0.29 1.26 16 45 H 0.36 8.09 4.21 -40.82 -0.17 7.92 16 46 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 47 H 0.11 1.54 8.06 -51.93 -0.42 1.12 16 48 H 0.09 1.24 3.75 -51.93 -0.19 1.04 16 49 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 50 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.09 0.86 7.20 -51.93 -0.37 0.49 16 LS Contribution 405.18 15.07 6.11 6.11 Total: -1.00 -36.94 405.18 -9.36 -46.30 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -7.88 Total: 13.70 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -2.31 Total: -4.02 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: 0.15 Total: -63.64 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.71 Total: -15.66 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.23 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.94 -9.36 -46.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269634323.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.072 kcal (2) G-P(sol) polarization free energy of solvation -36.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds