Wall clock time and date at job start Wed Apr 1 2020 05:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08994 * 109.47042 * 2 1 4 4 O 1.42902 * 109.47026 * 240.00360 * 2 1 3 5 5 C 1.42902 * 113.99959 * 89.99693 * 4 2 1 6 6 C 1.50693 * 109.47063 * 179.97438 * 5 4 2 7 7 C 1.38660 * 120.79011 * 269.72144 * 6 5 4 8 8 C 1.38206 * 119.16017 * 179.79708 * 7 6 5 9 9 N 1.31879 * 120.76520 * 0.49032 * 8 7 6 10 10 C 1.31869 * 121.72134 * 359.73835 * 9 8 7 11 11 C 1.38203 * 120.77039 * 0.02612 * 10 9 8 12 12 C 1.50695 * 109.46896 * 120.00515 * 2 1 3 13 13 O 1.21283 * 120.00239 * 120.00052 * 12 2 1 14 14 N 1.34779 * 120.00461 * 299.99901 * 12 2 1 15 15 C 1.46500 * 120.00411 * 175.70850 * 14 12 2 16 16 C 1.52998 * 109.46976 * 174.06130 * 15 14 12 17 17 C 1.53004 * 109.46999 * 54.06074 * 15 14 12 18 18 N 1.46497 * 109.46886 * 59.99820 * 17 15 14 19 19 C 1.36942 * 119.99774 * 179.97438 * 18 17 15 20 20 H 1.07994 * 119.99884 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00008 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99957 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 120.00081 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46572 * 90.00571 * 23 21 19 25 25 H 1.48497 * 109.47307 * 210.00204 * 23 21 19 26 26 H 1.48501 * 109.47197 * 330.00745 * 23 21 19 27 27 C 1.53001 * 109.46984 * 294.06040 * 15 14 12 28 28 C 1.53002 * 117.49942 * 2.18022 * 27 15 14 29 29 C 1.52998 * 117.49774 * 293.51753 * 27 15 14 30 30 H 1.09000 * 109.46858 * 59.99558 * 1 2 3 31 31 H 1.09002 * 109.46551 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46773 * 299.99483 * 1 2 3 33 33 H 1.08996 * 109.47339 * 300.00425 * 5 4 2 34 34 H 1.09004 * 109.46582 * 59.99989 * 5 4 2 35 35 H 1.07996 * 120.41865 * 0.02562 * 7 6 5 36 36 H 1.08001 * 119.61875 * 180.20667 * 8 7 6 37 37 H 1.08004 * 119.60995 * 179.97438 * 10 9 8 38 38 H 1.07996 * 120.41841 * 179.97438 * 11 10 9 39 39 H 0.97001 * 119.99454 * 355.71070 * 14 12 2 40 40 H 1.09001 * 109.47193 * 59.99944 * 16 15 14 41 41 H 1.08994 * 109.47174 * 180.02562 * 16 15 14 42 42 H 1.09004 * 109.46905 * 299.99717 * 16 15 14 43 43 H 1.08994 * 109.46997 * 179.97438 * 17 15 14 44 44 H 1.08997 * 109.46690 * 300.00054 * 17 15 14 45 45 H 0.97003 * 120.00523 * 0.02562 * 18 17 15 46 46 H 0.97004 * 119.99938 * 179.97438 * 22 21 19 47 47 H 1.08999 * 115.54605 * 147.84414 * 27 15 14 48 48 H 1.09002 * 117.49640 * 359.97438 * 28 27 15 49 49 H 1.08998 * 117.49582 * 145.02031 * 28 27 15 50 50 H 1.09000 * 117.49787 * 214.98120 * 29 27 15 51 51 H 1.08997 * 117.50054 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2001 0.1831 -2.2941 6 6 2.7014 -0.6280 -3.4611 7 6 4.0606 -0.8062 -3.6699 8 6 4.4830 -1.5600 -4.7485 9 7 3.6107 -2.0979 -5.5785 10 6 2.3113 -1.9454 -5.4135 11 6 1.8147 -1.2088 -4.3548 12 6 2.0324 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1191 14 7 1.7068 -0.2502 2.4546 15 6 2.1157 -0.9931 3.6492 16 6 1.7540 -0.1881 4.8990 17 6 3.6275 -1.2260 3.6123 18 7 4.3196 0.0647 3.5791 19 6 5.6879 0.1071 3.5433 20 1 6.2567 -0.8109 3.5400 21 6 6.3439 1.3301 3.5124 22 7 7.6590 1.3708 3.4775 23 14 5.3601 2.9181 3.5189 24 1 5.1351 3.3552 4.9202 25 1 6.1118 3.9691 2.7872 26 1 4.0512 2.6923 2.8546 27 6 1.3927 -2.3411 3.6838 28 6 0.4695 -2.6779 2.5111 29 6 -0.1250 -2.3239 3.8766 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.2538 0.6548 -2.5588 34 1 2.9320 0.9515 -2.0449 35 1 4.7798 -0.3647 -2.9960 36 1 5.5398 -1.7064 -4.9162 37 1 1.6273 -2.4008 -6.1144 38 1 0.7495 -1.0872 -4.2253 39 1 1.2017 0.5730 2.5446 40 1 0.6770 -0.0222 4.9252 41 1 2.0586 -0.7406 5.7878 42 1 2.2691 0.7722 4.8743 43 1 3.9318 -1.7783 4.5013 44 1 3.8851 -1.7994 2.7219 45 1 3.8088 0.8894 3.5832 46 1 8.1173 2.2255 3.4555 47 1 1.9486 -3.1611 4.1383 48 1 0.3770 -1.9390 1.7151 49 1 0.4178 -3.7196 2.1945 50 1 -0.5677 -3.1329 4.4577 51 1 -0.6083 -1.3524 3.9792 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269634323.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:55 Heat of formation + Delta-G solvation = -13.039739 kcal Electronic energy + Delta-G solvation = -31780.614563 eV Core-core repulsion = 27681.202337 eV Total energy + Delta-G solvation = -4099.412226 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.78616 -41.13602 -39.41712 -37.98273 -36.73371 -35.01607 -34.49811 -33.58775 -32.33902 -32.18381 -30.85382 -27.93479 -27.87836 -25.58160 -25.05131 -24.45057 -23.14436 -23.01486 -22.84488 -21.70464 -20.52945 -19.75160 -18.66549 -18.00526 -17.51269 -17.42164 -17.26420 -16.73553 -16.57264 -16.44681 -15.99693 -15.56857 -15.36321 -15.22586 -14.99789 -14.79756 -14.72411 -14.56204 -14.21797 -13.75042 -13.64845 -13.60383 -13.40276 -13.35582 -13.14667 -12.99966 -12.83980 -12.52437 -12.46521 -12.31138 -12.21295 -12.03351 -11.96411 -11.82017 -11.21343 -11.15580 -10.96115 -10.84383 -10.78207 -10.51189 -10.24005 -10.12700 -9.97021 -9.22021 -8.02898 -5.35674 0.09989 0.15847 1.29649 1.39013 1.45836 1.74916 1.91151 2.46913 2.67885 2.93745 3.07754 3.27482 3.52079 3.53917 3.61846 3.72597 3.77528 3.91916 3.94424 3.96151 4.01566 4.07405 4.12954 4.16683 4.26542 4.34538 4.35973 4.39414 4.55185 4.66110 4.71190 4.79731 4.82092 4.84307 4.85438 4.89729 4.95551 4.95985 5.08551 5.17070 5.24520 5.30052 5.31429 5.32813 5.34138 5.68041 5.71669 5.75641 6.00260 6.19705 6.69131 6.95615 7.07380 7.43083 7.81215 8.06930 9.19750 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008448 B = 0.003747 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3313.495524 B = 7471.806132 C = 9597.824798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.066 3.934 3 H 0.100 0.900 4 O -0.378 6.378 5 C 0.096 3.904 6 C -0.057 4.057 7 C -0.167 4.167 8 C 0.084 3.916 9 N -0.507 5.507 10 C 0.086 3.914 11 C -0.149 4.149 12 C 0.512 3.488 13 O -0.550 6.550 14 N -0.709 5.709 15 C 0.209 3.791 16 C -0.144 4.144 17 C 0.141 3.859 18 N -0.741 5.741 19 C -0.233 4.233 20 H 0.039 0.961 21 C -0.069 4.069 22 N -0.989 5.989 23 Si 0.962 3.038 24 H -0.271 1.271 25 H -0.296 1.296 26 H -0.245 1.245 27 C -0.168 4.168 28 C -0.178 4.178 29 C -0.141 4.141 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.132 0.868 36 H 0.170 0.830 37 H 0.186 0.814 38 H 0.166 0.834 39 H 0.412 0.588 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.017 0.983 44 H 0.030 0.970 45 H 0.367 0.633 46 H 0.258 0.742 47 H 0.094 0.906 48 H 0.095 0.905 49 H 0.078 0.922 50 H 0.105 0.895 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.753 0.547 -9.910 27.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.005 3.995 3 H 0.118 0.882 4 O -0.297 6.297 5 C 0.020 3.980 6 C -0.066 4.066 7 C -0.187 4.187 8 C -0.072 4.072 9 N -0.217 5.217 10 C -0.070 4.070 11 C -0.168 4.168 12 C 0.299 3.701 13 O -0.426 6.426 14 N -0.364 5.364 15 C 0.122 3.878 16 C -0.202 4.202 17 C 0.014 3.986 18 N -0.387 5.387 19 C -0.364 4.364 20 H 0.057 0.943 21 C -0.259 4.259 22 N -0.640 5.640 23 Si 0.788 3.212 24 H -0.197 1.197 25 H -0.223 1.223 26 H -0.169 1.169 27 C -0.188 4.188 28 C -0.216 4.216 29 C -0.178 4.178 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.150 0.850 36 H 0.187 0.813 37 H 0.203 0.797 38 H 0.183 0.817 39 H 0.249 0.751 40 H 0.115 0.885 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.035 0.965 44 H 0.048 0.952 45 H 0.202 0.798 46 H 0.066 0.934 47 H 0.112 0.888 48 H 0.113 0.887 49 H 0.096 0.904 50 H 0.124 0.876 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -24.719 -0.960 -10.705 26.955 hybrid contribution 0.569 1.591 0.790 1.866 sum -24.150 0.631 -9.914 26.114 Atomic orbital electron populations 1.22270 0.90350 1.03825 1.05389 1.22138 0.97132 0.96356 0.83906 0.88187 1.88077 1.87187 1.34974 1.19467 1.21578 1.01645 0.91227 0.83537 1.20235 0.93698 0.97198 0.95426 1.22305 0.96763 1.00327 0.99310 1.23035 1.00590 0.93056 0.90495 1.67705 1.04488 1.20357 1.29175 1.23322 0.91788 0.95219 0.96709 1.22370 1.02131 0.97329 0.94977 1.20724 0.79445 0.84698 0.85260 1.90701 1.36958 1.28175 1.86752 1.45870 1.58006 1.28105 1.04412 1.19876 0.91445 0.91015 0.85415 1.22002 1.03218 0.99577 0.95375 1.21209 0.91367 0.87657 0.98373 1.42399 1.02062 1.03534 1.90750 1.18978 0.83154 0.93022 1.41261 0.94277 1.25597 0.96461 1.01327 1.02547 1.69925 1.08559 1.25634 1.59847 0.85321 0.78826 0.78648 0.78455 1.19713 1.22305 1.16918 1.22414 0.93556 0.97437 1.05347 1.23024 1.04230 1.01629 0.92674 1.23069 0.92700 1.04054 0.97981 0.88949 0.91950 0.88504 0.88308 0.91986 0.84985 0.81266 0.79695 0.81691 0.75147 0.88458 0.90672 0.92771 0.96472 0.95169 0.79835 0.93380 0.88771 0.88675 0.90374 0.87646 0.86772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 8.96 71.99 0.64 -1.47 16 2 C 0.07 1.49 3.14 29.85 0.09 1.58 16 3 H 0.10 1.95 7.79 -2.39 -0.02 1.93 16 4 O -0.38 -10.44 9.50 -129.94 -1.23 -11.68 16 5 C 0.10 1.96 5.92 71.23 0.42 2.38 16 6 C -0.06 -1.30 5.55 -19.67 -0.11 -1.41 16 7 C -0.17 -4.22 9.82 22.36 0.22 -4.00 16 8 C 0.08 2.05 11.18 84.68 0.95 3.00 16 9 N -0.51 -12.53 10.36 -195.83 -2.03 -14.56 16 10 C 0.09 1.67 11.18 84.68 0.95 2.61 16 11 C -0.15 -2.71 9.82 22.36 0.22 -2.49 16 12 C 0.51 15.84 4.47 87.65 0.39 16.24 16 13 O -0.55 -23.32 12.83 16.00 0.21 -23.11 16 14 N -0.71 -18.01 4.03 -422.92 -1.71 -19.71 16 15 C 0.21 6.04 0.55 3.60 0.00 6.04 16 16 C -0.14 -3.30 8.18 71.98 0.59 -2.71 16 17 C 0.14 6.01 4.81 86.38 0.42 6.43 16 18 N -0.74 -35.86 4.98 -343.46 -1.71 -37.57 16 19 C -0.23 -14.13 10.47 84.03 0.88 -13.25 16 20 H 0.04 2.69 8.06 -2.91 -0.02 2.67 16 21 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 22 N -0.99 -65.50 13.97 21.65 0.30 -65.20 16 23 Si 0.96 44.85 27.74 68.60 1.90 46.76 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 26 H -0.24 -9.81 6.52 99.48 0.65 -9.16 16 27 C -0.17 -4.38 4.89 -10.79 -0.05 -4.43 16 28 C -0.18 -4.31 8.62 30.62 0.26 -4.05 16 29 C -0.14 -2.47 9.68 30.62 0.30 -2.18 16 30 H 0.09 0.79 7.87 -2.39 -0.02 0.77 16 31 H 0.06 0.98 7.26 -2.39 -0.02 0.96 16 32 H 0.10 0.79 7.67 -2.39 -0.02 0.78 16 33 H 0.10 1.25 7.83 -2.39 -0.02 1.23 16 34 H 0.06 1.28 8.04 -2.38 -0.02 1.26 16 35 H 0.13 3.38 8.06 -2.91 -0.02 3.35 16 36 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 37 H 0.19 2.25 8.06 -2.91 -0.02 2.22 16 38 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 39 H 0.41 7.19 8.04 -92.71 -0.75 6.45 16 40 H 0.10 1.44 6.91 -2.39 -0.02 1.42 16 41 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.05 1.38 6.86 -2.38 -0.02 1.37 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.03 1.54 5.64 -2.39 -0.01 1.52 16 45 H 0.37 16.04 4.21 -92.71 -0.39 15.65 16 46 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 47 H 0.09 2.71 8.06 -2.39 -0.02 2.69 16 48 H 0.10 2.30 3.75 -2.39 -0.01 2.29 16 49 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.11 1.49 7.20 -2.39 -0.02 1.47 16 Total: -1.00 -87.81 405.18 2.13 -85.68 By element: Atomic # 1 Polarization: 41.03 SS G_CDS: -0.24 Total: 40.79 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 6.64 Total: -1.40 kcal Atomic # 7 Polarization: -131.90 SS G_CDS: -5.14 Total: -137.04 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -1.03 Total: -34.79 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.90 Total: 46.76 kcal Total: -87.81 2.13 -85.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269634323.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.641 kcal (2) G-P(sol) polarization free energy of solvation -87.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds