Wall clock time and date at job start Wed Apr 1 2020 04:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47190 * 2 1 4 4 O 1.42893 * 109.47518 * 120.00346 * 2 1 3 5 5 C 1.35678 * 116.99988 * 270.00095 * 4 2 1 6 6 C 1.38921 * 119.68310 * 179.72489 * 5 4 2 7 7 C 1.38381 * 119.10940 * 179.75059 * 6 5 4 8 8 C 1.38829 * 118.48624 * 0.51459 * 7 6 5 9 9 C 1.38054 * 119.28693 * 359.72518 * 8 7 6 10 10 N 1.31957 * 120.83511 * 0.02830 * 9 8 7 11 11 C 1.50700 * 109.47108 * 240.00165 * 2 1 3 12 12 O 1.21283 * 120.00537 * 244.99878 * 11 2 1 13 13 N 1.34786 * 119.99845 * 64.99777 * 11 2 1 14 14 C 1.46919 * 120.62891 * 5.69450 * 13 11 2 15 15 C 1.53197 * 108.77602 * 126.36925 * 14 13 11 16 16 C 1.53041 * 109.31355 * 54.63282 * 15 14 13 17 17 C 1.53041 * 109.53469 * 298.63594 * 16 15 14 18 18 C 1.46922 * 120.63058 * 185.66683 * 13 11 2 19 19 H 1.09008 * 109.58331 * 113.70018 * 18 13 11 20 20 C 1.53002 * 109.58782 * 353.42555 * 18 13 11 21 21 C 1.53002 * 109.47327 * 179.97438 * 20 18 13 22 22 N 1.46496 * 109.47046 * 175.05653 * 21 20 18 23 23 C 1.36939 * 119.99917 * 179.97438 * 22 21 20 24 24 H 1.08001 * 119.99943 * 0.02562 * 23 22 21 25 25 C 1.38804 * 120.00324 * 179.97438 * 23 22 21 26 26 N 1.31623 * 120.00047 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00290 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47040 * 270.00145 * 27 25 23 29 29 H 1.48504 * 109.47195 * 30.00154 * 27 25 23 30 30 H 1.48504 * 109.47445 * 150.00326 * 27 25 23 31 31 H 1.08995 * 109.47465 * 59.99624 * 1 2 3 32 32 H 1.08997 * 109.47190 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47263 * 299.99676 * 1 2 3 34 34 H 1.07999 * 120.45136 * 0.02562 * 6 5 4 35 35 H 1.08001 * 120.75817 * 180.23690 * 7 6 5 36 36 H 1.08001 * 120.35986 * 179.70271 * 8 7 6 37 37 H 1.08002 * 119.57888 * 180.02562 * 9 8 7 38 38 H 1.08999 * 109.58555 * 246.15688 * 14 13 11 39 39 H 1.09000 * 109.59281 * 6.58243 * 14 13 11 40 40 H 1.09002 * 109.49417 * 174.58509 * 15 14 13 41 41 H 1.09001 * 109.49495 * 294.67976 * 15 14 13 42 42 H 1.09005 * 109.45977 * 58.65648 * 16 15 14 43 43 H 1.08997 * 109.45837 * 178.61723 * 16 15 14 44 44 H 1.08995 * 109.50182 * 301.41238 * 17 16 15 45 45 H 1.09006 * 109.49588 * 181.31472 * 17 16 15 46 46 H 1.08997 * 109.47667 * 59.97101 * 20 18 13 47 47 H 1.09008 * 109.46931 * 299.97626 * 20 18 13 48 48 H 1.09005 * 109.46766 * 55.05512 * 21 20 18 49 49 H 1.09001 * 109.46917 * 295.05662 * 21 20 18 50 50 H 0.96998 * 120.00660 * 359.97438 * 22 21 20 51 51 H 0.96994 * 120.00311 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 2.2117 0.0829 2.2741 6 6 2.6689 -0.5160 3.4412 7 6 2.8792 0.2677 4.5622 8 6 2.6132 1.6277 4.4787 9 6 2.1558 2.1545 3.2875 10 7 1.9695 1.3824 2.2337 11 6 2.0323 -0.7104 -1.2305 12 8 2.6530 -1.7467 -1.1217 13 7 1.7918 -0.1941 -2.4521 14 6 1.1516 1.1204 -2.5963 15 6 2.0298 2.0011 -3.4908 16 6 2.2880 1.2789 -4.8152 17 6 3.0322 -0.0312 -4.5471 18 6 2.1653 -0.9348 -3.6646 19 1 1.2656 -1.2248 -4.2074 20 6 2.9566 -2.1860 -3.2780 21 6 3.3437 -2.9556 -4.5425 22 7 4.2003 -4.0880 -4.1819 23 6 4.6733 -4.9262 -5.1560 24 1 4.4151 -4.7522 -6.1901 25 6 5.4853 -5.9988 -4.8144 26 7 5.8004 -6.2107 -3.5542 27 14 6.1300 -7.1426 -6.1432 28 1 5.1685 -8.2558 -6.3473 29 1 6.2894 -6.3874 -7.4119 30 1 7.4445 -7.6941 -5.7268 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8901 34 1 2.8619 -1.5782 3.4721 35 1 3.2378 -0.1695 5.4824 36 1 2.7621 2.2667 5.3366 37 1 1.9477 3.2119 3.2171 38 1 0.1693 1.0003 -3.0532 39 1 1.0465 1.5854 -1.6161 40 1 1.5205 2.9451 -3.6844 41 1 2.9789 2.1950 -2.9911 42 1 1.3372 1.0633 -5.3027 43 1 2.8923 1.9138 -5.4631 44 1 3.9718 0.1818 -4.0375 45 1 3.2364 -0.5337 -5.4926 46 1 2.3428 -2.8213 -2.6396 47 1 3.8585 -1.8937 -2.7402 48 1 3.8828 -2.2935 -5.2201 49 1 2.4429 -3.3234 -5.0339 50 1 4.4325 -4.2441 -3.2531 51 1 6.3676 -6.9604 -3.3154 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271600099.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:55 Heat of formation + Delta-G solvation = -5.887499 kcal Electronic energy + Delta-G solvation = -31207.340105 eV Core-core repulsion = 27108.238024 eV Total energy + Delta-G solvation = -4099.102081 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.15783 -40.41303 -38.35720 -37.10089 -35.23227 -33.58544 -32.76451 -32.73586 -31.70788 -30.55931 -30.09674 -27.85329 -25.69463 -24.57748 -24.11242 -23.78542 -23.15067 -22.15323 -20.86183 -20.65914 -19.19520 -18.73835 -17.29642 -16.95064 -16.45206 -16.20129 -15.98042 -15.86294 -15.27200 -14.81065 -14.71036 -14.57063 -14.53496 -14.14102 -13.77515 -13.56098 -13.46987 -13.33091 -13.14401 -13.01397 -12.85850 -12.64247 -12.55183 -12.26183 -12.07394 -11.90964 -11.46471 -11.30147 -11.04082 -10.99350 -10.89191 -10.77920 -10.68922 -10.41245 -10.28787 -10.23393 -9.92512 -9.90917 -9.55853 -8.86748 -8.73667 -8.65484 -8.46318 -6.74811 -5.61500 -2.89697 0.87405 0.97729 2.35864 2.61882 3.22248 3.50098 3.51694 3.55668 3.58205 3.96404 4.25785 4.53443 4.56132 4.66815 4.70611 4.71473 4.75005 4.80061 4.82172 4.91929 4.93652 5.01218 5.17751 5.22208 5.32066 5.36487 5.44337 5.44792 5.57140 5.61909 5.65821 5.69289 5.78563 5.80879 5.82721 5.91062 5.98317 6.01216 6.12927 6.16396 6.29897 6.41251 6.44453 6.62134 6.70129 6.99638 7.13212 7.22440 7.39913 7.54673 7.81415 8.24779 8.57433 9.67693 10.30297 10.65062 11.61455 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010582 B = 0.002677 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.489709 B =10456.846939 C =12560.372250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.072 3.928 3 H 0.110 0.890 4 O -0.273 6.273 5 C 0.326 3.674 6 C -0.187 4.187 7 C -0.040 4.040 8 C -0.216 4.216 9 C 0.138 3.862 10 N -0.545 5.545 11 C 0.510 3.490 12 O -0.492 6.492 13 N -0.606 5.606 14 C 0.102 3.898 15 C -0.136 4.136 16 C -0.120 4.120 17 C -0.134 4.134 18 C 0.155 3.845 19 H 0.073 0.927 20 C -0.114 4.114 21 C 0.147 3.853 22 N -0.731 5.731 23 C -0.236 4.236 24 H 0.069 0.931 25 C -0.017 4.017 26 N -0.932 5.932 27 Si 0.906 3.094 28 H -0.291 1.291 29 H -0.283 1.283 30 H -0.292 1.292 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.158 0.842 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.017 0.983 49 H 0.012 0.988 50 H 0.386 0.614 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.289 24.699 12.911 30.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.012 3.988 3 H 0.128 0.872 4 O -0.178 6.178 5 C 0.147 3.853 6 C -0.207 4.207 7 C -0.065 4.065 8 C -0.237 4.237 9 C -0.017 4.017 10 N -0.269 5.269 11 C 0.295 3.705 12 O -0.365 6.365 13 N -0.342 5.342 14 C -0.021 4.021 15 C -0.174 4.174 16 C -0.157 4.157 17 C -0.172 4.172 18 C 0.052 3.948 19 H 0.091 0.909 20 C -0.151 4.151 21 C 0.018 3.982 22 N -0.375 5.375 23 C -0.367 4.367 24 H 0.087 0.913 25 C -0.213 4.213 26 N -0.581 5.581 27 Si 0.737 3.263 28 H -0.218 1.218 29 H -0.209 1.209 30 H -0.218 1.218 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.163 0.837 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.176 0.824 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.093 0.907 48 H 0.034 0.966 49 H 0.030 0.970 50 H 0.219 0.781 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.175 24.102 11.981 29.967 hybrid contribution 0.685 -0.765 0.286 1.066 sum -12.490 23.337 12.268 29.173 Atomic orbital electron populations 1.22252 0.92597 1.03939 1.03669 1.22138 0.95653 0.97838 0.83205 0.87214 1.86426 1.79614 1.34214 1.17541 1.19926 0.90943 0.87327 0.87115 1.21163 1.05724 1.02517 0.91336 1.21441 0.93945 0.93420 0.97733 1.21974 1.05493 0.96243 0.99973 1.22392 0.92848 0.99105 0.87390 1.67244 1.22160 1.04791 1.32681 1.20170 0.80558 0.85855 0.83871 1.90919 1.37599 1.22562 1.85403 1.48029 1.61315 1.19495 1.05342 1.21895 0.96249 0.83086 1.00861 1.21934 1.00544 0.98238 0.96659 1.21538 1.00797 0.96815 0.96598 1.22081 0.98973 0.95367 1.00806 1.21344 0.97694 0.91946 0.83791 0.90921 1.22238 1.00874 0.94183 0.97839 1.20831 0.93296 0.89704 0.94321 1.42359 1.58049 1.29414 1.07675 1.19242 1.23474 1.04847 0.89161 0.91337 1.24754 1.01107 0.99300 0.96149 1.69688 1.41515 1.31672 1.15229 0.86199 0.78103 0.81081 0.80885 1.21825 1.20864 1.21843 0.90110 0.91071 0.90979 0.83731 0.84089 0.84611 0.82439 0.91025 0.89745 0.90776 0.91431 0.91775 0.91679 0.91352 0.89773 0.89899 0.90711 0.96570 0.97038 0.78066 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 9.17 37.16 0.34 -1.26 16 2 C 0.07 0.89 2.06 -27.89 -0.06 0.83 16 3 H 0.11 1.23 6.02 -51.93 -0.31 0.92 16 4 O -0.27 -3.98 9.30 -38.60 -0.36 -4.34 16 5 C 0.33 4.04 7.45 -17.12 -0.13 3.91 16 6 C -0.19 -1.97 10.04 -39.28 -0.39 -2.36 16 7 C -0.04 -0.31 10.17 -39.31 -0.40 -0.71 16 8 C -0.22 -1.48 10.11 -39.43 -0.40 -1.88 16 9 C 0.14 1.09 11.18 -17.57 -0.20 0.89 16 10 N -0.54 -5.85 8.65 -13.33 -0.12 -5.97 16 11 C 0.51 7.77 7.00 -10.98 -0.08 7.69 16 12 O -0.49 -9.91 11.91 -14.31 -0.17 -10.08 16 13 N -0.61 -7.67 2.97 -165.22 -0.49 -8.17 16 14 C 0.10 0.86 4.90 -3.71 -0.02 0.84 16 15 C -0.14 -1.08 6.08 -26.61 -0.16 -1.24 16 16 C -0.12 -1.10 5.88 -26.69 -0.16 -1.26 16 17 C -0.13 -1.70 4.87 -26.61 -0.13 -1.83 16 18 C 0.15 2.23 3.01 -67.60 -0.20 2.02 16 19 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 20 C -0.11 -2.21 3.25 -26.73 -0.09 -2.30 16 21 C 0.15 3.27 6.06 -4.04 -0.02 3.24 16 22 N -0.73 -20.59 5.60 -59.91 -0.34 -20.93 16 23 C -0.24 -7.10 9.99 -15.06 -0.15 -7.25 16 24 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 25 C -0.02 -0.53 5.50 -17.43 -0.10 -0.63 16 26 N -0.93 -30.19 13.06 55.49 0.72 -29.46 16 27 Si 0.91 23.56 29.55 -169.99 -5.02 18.54 16 28 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 29 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 30 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 31 H 0.08 0.60 5.83 -51.93 -0.30 0.30 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 34 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 36 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 37 H 0.16 0.75 8.06 -52.49 -0.42 0.32 16 38 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 39 H 0.08 0.60 5.02 -51.93 -0.26 0.34 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.08 1.11 6.66 -51.93 -0.35 0.77 16 46 H 0.08 1.80 6.45 -51.93 -0.34 1.47 16 47 H 0.07 1.64 7.03 -51.92 -0.36 1.27 16 48 H 0.02 0.35 6.33 -51.93 -0.33 0.03 16 49 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.39 11.68 7.67 -40.82 -0.31 11.36 16 51 H 0.25 7.89 8.31 -40.82 -0.34 7.55 16 LS Contribution 399.88 15.07 6.03 6.03 Total: -1.00 -37.22 399.88 -10.11 -47.33 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -8.03 Total: 8.32 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -2.34 Total: -1.28 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: -0.22 Total: -64.52 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.53 Total: -14.41 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.02 Total: 18.54 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.22 -10.11 -47.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271600099.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.444 kcal (2) G-P(sol) polarization free energy of solvation -37.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds