Wall clock time and date at job start Wed Apr 1 2020 04:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47190 * 2 1 4 4 O 1.42893 * 109.47518 * 120.00346 * 2 1 3 5 5 C 1.35678 * 116.99988 * 270.00095 * 4 2 1 6 6 C 1.38921 * 119.68310 * 179.72489 * 5 4 2 7 7 C 1.38381 * 119.10940 * 179.75059 * 6 5 4 8 8 C 1.38829 * 118.48624 * 0.51459 * 7 6 5 9 9 C 1.38054 * 119.28693 * 359.72518 * 8 7 6 10 10 N 1.31957 * 120.83511 * 0.02830 * 9 8 7 11 11 C 1.50700 * 109.47108 * 240.00165 * 2 1 3 12 12 O 1.21283 * 120.00537 * 244.99878 * 11 2 1 13 13 N 1.34786 * 119.99845 * 64.99777 * 11 2 1 14 14 C 1.46919 * 120.62891 * 5.69450 * 13 11 2 15 15 C 1.53197 * 108.77602 * 126.36925 * 14 13 11 16 16 C 1.53041 * 109.31355 * 54.63282 * 15 14 13 17 17 C 1.53041 * 109.53469 * 298.63594 * 16 15 14 18 18 C 1.46922 * 120.63058 * 185.66683 * 13 11 2 19 19 H 1.09008 * 109.58331 * 113.70018 * 18 13 11 20 20 C 1.53002 * 109.58782 * 353.42555 * 18 13 11 21 21 C 1.53002 * 109.47327 * 179.97438 * 20 18 13 22 22 N 1.46496 * 109.47046 * 175.05653 * 21 20 18 23 23 C 1.36939 * 119.99917 * 179.97438 * 22 21 20 24 24 H 1.08001 * 119.99943 * 0.02562 * 23 22 21 25 25 C 1.38804 * 120.00324 * 179.97438 * 23 22 21 26 26 N 1.31623 * 120.00047 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00290 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47040 * 270.00145 * 27 25 23 29 29 H 1.48504 * 109.47195 * 30.00154 * 27 25 23 30 30 H 1.48504 * 109.47445 * 150.00326 * 27 25 23 31 31 H 1.08995 * 109.47465 * 59.99624 * 1 2 3 32 32 H 1.08997 * 109.47190 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47263 * 299.99676 * 1 2 3 34 34 H 1.07999 * 120.45136 * 0.02562 * 6 5 4 35 35 H 1.08001 * 120.75817 * 180.23690 * 7 6 5 36 36 H 1.08001 * 120.35986 * 179.70271 * 8 7 6 37 37 H 1.08002 * 119.57888 * 180.02562 * 9 8 7 38 38 H 1.08999 * 109.58555 * 246.15688 * 14 13 11 39 39 H 1.09000 * 109.59281 * 6.58243 * 14 13 11 40 40 H 1.09002 * 109.49417 * 174.58509 * 15 14 13 41 41 H 1.09001 * 109.49495 * 294.67976 * 15 14 13 42 42 H 1.09005 * 109.45977 * 58.65648 * 16 15 14 43 43 H 1.08997 * 109.45837 * 178.61723 * 16 15 14 44 44 H 1.08995 * 109.50182 * 301.41238 * 17 16 15 45 45 H 1.09006 * 109.49588 * 181.31472 * 17 16 15 46 46 H 1.08997 * 109.47667 * 59.97101 * 20 18 13 47 47 H 1.09008 * 109.46931 * 299.97626 * 20 18 13 48 48 H 1.09005 * 109.46766 * 55.05512 * 21 20 18 49 49 H 1.09001 * 109.46917 * 295.05662 * 21 20 18 50 50 H 0.96998 * 120.00660 * 359.97438 * 22 21 20 51 51 H 0.96994 * 120.00311 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 2.2117 0.0829 2.2741 6 6 2.6689 -0.5160 3.4412 7 6 2.8792 0.2677 4.5622 8 6 2.6132 1.6277 4.4787 9 6 2.1558 2.1545 3.2875 10 7 1.9695 1.3824 2.2337 11 6 2.0323 -0.7104 -1.2305 12 8 2.6530 -1.7467 -1.1217 13 7 1.7918 -0.1941 -2.4521 14 6 1.1516 1.1204 -2.5963 15 6 2.0298 2.0011 -3.4908 16 6 2.2880 1.2789 -4.8152 17 6 3.0322 -0.0312 -4.5471 18 6 2.1653 -0.9348 -3.6646 19 1 1.2656 -1.2248 -4.2074 20 6 2.9566 -2.1860 -3.2780 21 6 3.3437 -2.9556 -4.5425 22 7 4.2003 -4.0880 -4.1819 23 6 4.6733 -4.9262 -5.1560 24 1 4.4151 -4.7522 -6.1901 25 6 5.4853 -5.9988 -4.8144 26 7 5.8004 -6.2107 -3.5542 27 14 6.1300 -7.1426 -6.1432 28 1 5.1685 -8.2558 -6.3473 29 1 6.2894 -6.3874 -7.4119 30 1 7.4445 -7.6941 -5.7268 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8901 34 1 2.8619 -1.5782 3.4721 35 1 3.2378 -0.1695 5.4824 36 1 2.7621 2.2667 5.3366 37 1 1.9477 3.2119 3.2171 38 1 0.1693 1.0003 -3.0532 39 1 1.0465 1.5854 -1.6161 40 1 1.5205 2.9451 -3.6844 41 1 2.9789 2.1950 -2.9911 42 1 1.3372 1.0633 -5.3027 43 1 2.8923 1.9138 -5.4631 44 1 3.9718 0.1818 -4.0375 45 1 3.2364 -0.5337 -5.4926 46 1 2.3428 -2.8213 -2.6396 47 1 3.8585 -1.8937 -2.7402 48 1 3.8828 -2.2935 -5.2201 49 1 2.4429 -3.3234 -5.0339 50 1 4.4325 -4.2441 -3.2531 51 1 6.3676 -6.9604 -3.3154 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271600099.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:54 Heat of formation + Delta-G solvation = -31.770902 kcal Electronic energy + Delta-G solvation = -31208.462494 eV Core-core repulsion = 27108.238024 eV Total energy + Delta-G solvation = -4100.224470 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.12042 -41.32125 -39.24944 -38.19487 -37.03707 -34.98031 -34.05519 -33.44578 -32.88196 -32.11021 -30.89336 -29.34759 -26.94747 -25.74129 -25.29232 -24.63425 -24.27082 -23.42920 -22.21525 -21.73928 -20.23022 -19.60130 -19.19283 -18.09196 -17.44152 -17.17107 -16.96015 -16.69791 -16.61200 -16.26403 -15.82764 -15.54689 -15.49328 -15.43318 -15.16234 -14.82268 -14.65331 -14.36852 -14.34284 -14.06364 -14.01522 -13.81113 -13.51054 -13.35126 -12.98095 -12.88707 -12.82434 -12.78455 -12.50302 -12.40434 -12.16984 -12.13427 -11.94141 -11.87708 -11.76301 -11.54298 -11.39450 -10.94397 -10.91422 -10.61819 -10.09041 -9.59583 -9.49218 -9.03466 -7.96325 -5.27821 0.19520 0.30891 1.41794 1.43236 1.46513 1.47582 1.55975 2.30776 2.54175 2.81691 3.25651 3.28737 3.35694 3.70846 3.78839 3.85942 3.88198 3.94864 4.03975 4.07958 4.11045 4.11642 4.22002 4.23634 4.35345 4.39963 4.45130 4.54171 4.60997 4.64235 4.68631 4.73968 4.77318 4.79904 4.90216 4.96286 5.03387 5.07374 5.09275 5.16237 5.23955 5.28897 5.36315 5.37538 5.46105 5.49548 5.53438 5.66225 6.16603 6.24251 6.35547 6.83424 7.11059 7.28318 8.05099 8.29811 9.28086 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010582 B = 0.002677 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.489709 B =10456.846939 C =12560.372250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.079 3.921 3 H 0.123 0.877 4 O -0.309 6.309 5 C 0.294 3.706 6 C -0.213 4.213 7 C -0.037 4.037 8 C -0.204 4.204 9 C 0.130 3.870 10 N -0.555 5.555 11 C 0.500 3.500 12 O -0.558 6.558 13 N -0.599 5.599 14 C 0.093 3.907 15 C -0.132 4.132 16 C -0.114 4.114 17 C -0.131 4.131 18 C 0.159 3.841 19 H 0.092 0.908 20 C -0.091 4.091 21 C 0.146 3.854 22 N -0.750 5.750 23 C -0.248 4.248 24 H 0.081 0.919 25 C -0.085 4.085 26 N -0.975 5.975 27 Si 0.984 3.016 28 H -0.284 1.284 29 H -0.264 1.264 30 H -0.294 1.294 31 H 0.108 0.892 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.134 0.866 35 H 0.170 0.830 36 H 0.173 0.827 37 H 0.193 0.807 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.053 0.947 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.045 0.955 45 H 0.077 0.923 46 H 0.053 0.947 47 H 0.040 0.960 48 H 0.030 0.970 49 H 0.020 0.980 50 H 0.368 0.632 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.969 28.210 12.333 34.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.020 3.980 3 H 0.140 0.860 4 O -0.216 6.216 5 C 0.116 3.884 6 C -0.233 4.233 7 C -0.063 4.063 8 C -0.224 4.224 9 C -0.025 4.025 10 N -0.279 5.279 11 C 0.287 3.713 12 O -0.436 6.436 13 N -0.333 5.333 14 C -0.028 4.028 15 C -0.169 4.169 16 C -0.151 4.151 17 C -0.169 4.169 18 C 0.056 3.944 19 H 0.109 0.891 20 C -0.129 4.129 21 C 0.020 3.980 22 N -0.392 5.392 23 C -0.379 4.379 24 H 0.099 0.901 25 C -0.276 4.276 26 N -0.626 5.626 27 Si 0.812 3.188 28 H -0.211 1.211 29 H -0.189 1.189 30 H -0.220 1.220 31 H 0.127 0.873 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.152 0.848 35 H 0.187 0.813 36 H 0.191 0.809 37 H 0.210 0.790 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.128 0.872 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.064 0.936 45 H 0.095 0.905 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.048 0.952 49 H 0.038 0.962 50 H 0.199 0.801 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.909 27.699 11.362 33.446 hybrid contribution 1.200 -1.731 0.572 2.183 sum -13.709 25.967 11.934 31.697 Atomic orbital electron populations 1.22221 0.90343 1.03380 1.05435 1.22157 0.97111 0.97342 0.81412 0.85961 1.86375 1.80567 1.35998 1.18703 1.20143 0.93074 0.88255 0.86927 1.21344 1.07075 1.02663 0.92261 1.21839 0.92899 0.93919 0.97610 1.22427 1.03178 0.96036 1.00724 1.23107 0.91978 1.00382 0.87056 1.67224 1.22555 1.04068 1.34072 1.20889 0.79661 0.85287 0.85456 1.90895 1.40679 1.25554 1.86433 1.48129 1.60492 1.20792 1.03908 1.22326 0.97226 0.80668 1.02537 1.21946 1.00206 0.99354 0.95439 1.21529 1.01211 0.94635 0.97757 1.22027 0.98187 0.97215 0.99480 1.21209 0.97905 0.90389 0.84929 0.89055 1.21895 0.99629 0.96007 0.95375 1.21023 0.92650 0.88509 0.95844 1.42664 1.58999 1.30928 1.06612 1.19729 1.23150 1.05107 0.89962 0.90135 1.25772 1.01796 1.01344 0.98691 1.69894 1.42550 1.32413 1.17753 0.84991 0.76972 0.78597 0.78283 1.21110 1.18881 1.22046 0.87318 0.92789 0.90025 0.84828 0.81291 0.80919 0.78995 0.88144 0.87987 0.87188 0.92845 0.89955 0.90499 0.93647 0.90467 0.92854 0.94133 0.95242 0.96210 0.80121 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.17 71.98 0.66 -2.24 16 2 C 0.08 2.03 2.06 29.85 0.06 2.09 16 3 H 0.12 2.71 6.02 -2.39 -0.01 2.69 16 4 O -0.31 -9.84 9.30 -70.97 -0.66 -10.50 16 5 C 0.29 7.65 7.45 84.79 0.63 8.29 16 6 C -0.21 -4.76 10.04 22.47 0.23 -4.53 16 7 C -0.04 -0.53 10.17 22.45 0.23 -0.30 16 8 C -0.20 -2.19 10.11 22.37 0.23 -1.97 16 9 C 0.13 1.73 11.18 84.63 0.95 2.68 16 10 N -0.55 -11.52 8.65 -308.94 -2.67 -14.20 16 11 C 0.50 16.17 7.00 87.66 0.61 16.78 16 12 O -0.56 -24.91 11.91 15.95 0.19 -24.72 16 13 N -0.60 -15.09 2.97 -795.02 -2.36 -17.45 16 14 C 0.09 1.29 4.90 86.37 0.42 1.71 16 15 C -0.13 -1.65 6.08 30.67 0.19 -1.46 16 16 C -0.11 -1.76 5.88 30.62 0.18 -1.58 16 17 C -0.13 -3.26 4.87 30.67 0.15 -3.11 16 18 C 0.16 4.61 3.01 44.98 0.14 4.75 16 19 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 20 C -0.09 -3.81 3.25 30.60 0.10 -3.71 16 21 C 0.15 6.79 6.06 86.38 0.52 7.31 16 22 N -0.75 -44.37 5.60 -343.45 -1.92 -46.29 16 23 C -0.25 -15.26 9.99 84.03 0.84 -14.42 16 24 H 0.08 4.65 7.83 -2.91 -0.02 4.63 16 25 C -0.08 -5.29 5.50 84.86 0.47 -4.82 16 26 N -0.98 -65.65 13.06 21.65 0.28 -65.37 16 27 Si 0.98 49.24 29.55 68.60 2.03 51.27 16 28 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 29 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 30 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 31 H 0.11 1.33 5.83 -2.39 -0.01 1.31 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 35 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 36 H 0.17 0.58 8.06 -2.91 -0.02 0.55 16 37 H 0.19 1.08 8.06 -2.91 -0.02 1.05 16 38 H 0.10 0.92 8.12 -2.39 -0.02 0.90 16 39 H 0.10 1.10 5.02 -2.39 -0.01 1.09 16 40 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.08 2.01 6.66 -2.38 -0.02 1.99 16 46 H 0.05 2.54 6.45 -2.39 -0.02 2.53 16 47 H 0.04 1.95 7.03 -2.38 -0.02 1.94 16 48 H 0.03 1.30 6.33 -2.38 -0.02 1.29 16 49 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.37 23.92 7.67 -92.71 -0.71 23.21 16 51 H 0.25 16.20 8.31 -92.71 -0.77 15.43 16 Total: -1.00 -88.65 399.88 1.70 -86.94 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: 0.22 Total: 34.85 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 6.60 Total: 5.46 kcal Atomic # 7 Polarization: -136.63 SS G_CDS: -6.68 Total: -143.30 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.47 Total: -35.22 kcal Atomic # 14 Polarization: 49.24 SS G_CDS: 2.03 Total: 51.27 kcal Total: -88.65 1.70 -86.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271600099.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.170 kcal (2) G-P(sol) polarization free energy of solvation -88.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds