Wall clock time and date at job start Wed Apr 1 2020 04:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47261 * 2 1 4 4 O 1.42903 * 109.47223 * 239.99413 * 2 1 3 5 5 C 1.35677 * 116.99441 * 90.00116 * 4 2 1 6 6 C 1.38927 * 119.67872 * 179.97438 * 5 4 2 7 7 C 1.38382 * 119.10819 * 179.97438 * 6 5 4 8 8 C 1.38830 * 118.48649 * 0.02562 * 7 6 5 9 9 C 1.38053 * 119.28849 * 359.97438 * 8 7 6 10 10 N 1.31964 * 120.83332 * 359.74789 * 9 8 7 11 11 C 1.50699 * 109.46760 * 119.99762 * 2 1 3 12 12 O 1.21283 * 119.99817 * 106.50818 * 11 2 1 13 13 N 1.34780 * 120.00142 * 286.50297 * 11 2 1 14 14 C 1.46924 * 120.62586 * 5.41447 * 13 11 2 15 15 C 1.53195 * 108.77533 * 126.41400 * 14 13 11 16 16 C 1.53044 * 109.31346 * 54.62748 * 15 14 13 17 17 C 1.53074 * 109.65882 * 298.70659 * 16 15 14 18 18 C 1.46921 * 120.62964 * 185.43321 * 13 11 2 19 19 H 1.09003 * 109.58446 * 113.66003 * 18 13 11 20 20 C 1.52998 * 109.58827 * 353.37783 * 18 13 11 21 21 C 1.53005 * 109.47114 * 179.91035 * 20 18 13 22 22 N 1.46492 * 109.47380 * 175.43933 * 21 20 18 23 23 C 1.36937 * 120.00181 * 179.97438 * 22 21 20 24 24 H 1.07992 * 120.00080 * 0.02562 * 23 22 21 25 25 C 1.38808 * 119.99836 * 180.02562 * 23 22 21 26 26 N 1.31618 * 120.00169 * 180.02562 * 25 23 22 27 27 Si 1.86803 * 120.00154 * 359.97438 * 25 23 22 28 28 H 1.48505 * 109.46891 * 269.99946 * 27 25 23 29 29 H 1.48489 * 109.47148 * 30.00278 * 27 25 23 30 30 H 1.48502 * 109.46998 * 150.00446 * 27 25 23 31 31 H 1.09004 * 109.47219 * 304.61021 * 1 2 3 32 32 H 1.09009 * 109.46549 * 64.60457 * 1 2 3 33 33 H 1.08991 * 109.47501 * 184.60216 * 1 2 3 34 34 H 1.07992 * 120.44560 * 0.02562 * 6 5 4 35 35 H 1.07998 * 120.75410 * 179.97438 * 7 6 5 36 36 H 1.07998 * 120.35595 * 180.02562 * 8 7 6 37 37 H 1.07998 * 119.57784 * 179.97438 * 9 8 7 38 38 H 1.08999 * 109.58399 * 246.19283 * 14 13 11 39 39 H 1.08994 * 109.59414 * 6.48512 * 14 13 11 40 40 H 1.08999 * 109.50048 * 174.58344 * 15 14 13 41 41 H 1.09004 * 109.49637 * 294.68234 * 15 14 13 42 42 H 1.09004 * 109.45342 * 58.65949 * 16 15 14 43 43 H 1.08999 * 109.46084 * 178.61564 * 16 15 14 44 44 H 1.08998 * 109.38561 * 301.26646 * 17 16 15 45 45 H 1.09007 * 109.61830 * 181.16786 * 17 16 15 46 46 H 1.08993 * 109.47042 * 59.91174 * 20 18 13 47 47 H 1.08998 * 109.47332 * 299.90478 * 20 18 13 48 48 H 1.08996 * 109.46943 * 55.43380 * 21 20 18 49 49 H 1.09007 * 109.47006 * 295.44139 * 21 20 18 50 50 H 0.97010 * 119.99953 * 0.02562 * 22 21 20 51 51 H 0.96999 * 120.00373 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.2117 0.0828 -2.2741 6 6 2.6748 -0.5151 -3.4395 7 6 2.8796 0.2677 -4.5622 8 6 2.6131 1.6276 -4.4788 9 6 2.1547 2.1542 -3.2878 10 7 1.9639 1.3812 -2.2354 11 6 2.0322 -0.7104 1.2305 12 8 2.5157 -1.8186 1.1360 13 7 1.9442 -0.1141 2.4360 14 6 1.2557 1.1753 2.5848 15 6 0.1942 1.0437 3.6816 16 6 0.8527 0.5310 4.9644 17 6 1.4622 -0.8507 4.7137 18 6 2.5353 -0.7409 3.6261 19 1 3.3618 -0.1295 3.9887 20 6 3.0485 -2.1373 3.2690 21 6 3.6655 -2.7866 4.5095 22 7 4.0582 -4.1627 4.1963 23 6 4.6370 -4.9456 5.1592 24 1 4.8036 -4.5488 6.1496 25 6 5.0095 -6.2494 4.8621 26 7 5.5654 -7.0021 5.7878 27 14 4.7207 -6.9361 3.1491 28 1 3.3788 -7.5695 3.0895 29 1 4.7928 -5.8348 2.1557 30 1 5.7608 -7.9501 2.8405 31 1 -0.3634 0.5837 0.8458 32 1 -0.3633 0.4408 -0.9285 33 1 -0.3634 -1.0242 0.0824 34 1 2.8715 -1.5765 -3.4691 35 1 3.2393 -0.1693 -5.4819 36 1 2.7619 2.2665 -5.3367 37 1 1.9463 3.2116 -3.2177 38 1 1.9761 1.9441 2.8640 39 1 0.7790 1.4459 1.6428 40 1 -0.2580 2.0176 3.8689 41 1 -0.5747 0.3406 3.3613 42 1 1.6382 1.2220 5.2705 43 1 0.1042 0.4598 5.7535 44 1 0.6810 -1.5366 4.3861 45 1 1.9129 -1.2242 5.6332 46 1 3.8035 -2.0579 2.4870 47 1 2.2196 -2.7490 2.9131 48 1 2.9346 -2.7924 5.3181 49 1 4.5437 -2.2193 4.8178 50 1 3.9089 -4.5191 3.3064 51 1 5.8254 -7.9133 5.5803 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271600102.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:59 Heat of formation + Delta-G solvation = -0.903106 kcal Electronic energy + Delta-G solvation = -31310.822744 eV Core-core repulsion = 27211.936802 eV Total energy + Delta-G solvation = -4098.885942 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.24992 -40.50449 -38.43756 -37.19961 -35.43667 -33.64321 -32.83891 -32.80978 -31.81916 -30.85062 -30.21296 -28.20560 -25.84393 -24.64267 -24.18713 -23.83782 -23.09832 -21.93374 -21.07234 -20.77759 -19.18216 -18.79569 -17.58398 -17.22341 -16.68839 -16.17457 -16.15426 -15.92598 -15.32494 -14.93435 -14.75808 -14.60347 -14.55763 -14.20363 -14.08796 -13.61390 -13.53391 -13.50142 -13.36212 -12.97916 -12.78669 -12.69360 -12.55081 -12.32835 -12.22454 -12.04876 -11.51614 -11.42652 -11.21733 -11.18280 -11.01132 -10.83389 -10.76606 -10.41075 -10.31764 -10.30832 -10.01683 -9.98044 -9.47533 -8.95908 -8.77672 -8.75895 -8.54851 -7.07371 -5.65490 -2.99054 0.79782 0.90210 2.25636 2.50812 3.14551 3.42622 3.50518 3.56441 3.58800 3.89688 4.15610 4.47223 4.49323 4.59747 4.64801 4.68805 4.72284 4.72710 4.73668 4.83743 4.86288 4.94133 5.08070 5.13141 5.21251 5.30567 5.36139 5.36971 5.46440 5.55074 5.58963 5.63886 5.70811 5.72841 5.78866 5.83699 5.87591 5.93184 6.02623 6.05292 6.13480 6.19730 6.32138 6.45682 6.59164 6.91009 6.99445 7.07242 7.29651 7.47090 8.12258 8.13243 8.54693 9.35394 10.08830 10.30389 11.53149 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009595 B = 0.003030 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.404063 B = 9237.383211 C =11722.080567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.072 3.928 3 H 0.110 0.890 4 O -0.274 6.274 5 C 0.325 3.675 6 C -0.187 4.187 7 C -0.040 4.040 8 C -0.216 4.216 9 C 0.139 3.861 10 N -0.544 5.544 11 C 0.512 3.488 12 O -0.497 6.497 13 N -0.605 5.605 14 C 0.097 3.903 15 C -0.135 4.135 16 C -0.120 4.120 17 C -0.134 4.134 18 C 0.154 3.846 19 H 0.075 0.925 20 C -0.118 4.118 21 C 0.151 3.849 22 N -0.755 5.755 23 C -0.239 4.239 24 H 0.089 0.911 25 C 0.002 3.998 26 N -0.938 5.938 27 Si 0.883 3.117 28 H -0.285 1.285 29 H -0.274 1.274 30 H -0.292 1.292 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.159 0.841 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.025 0.975 49 H 0.020 0.980 50 H 0.363 0.637 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.410 26.520 -17.823 34.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.012 3.988 3 H 0.127 0.873 4 O -0.180 6.180 5 C 0.146 3.854 6 C -0.208 4.208 7 C -0.065 4.065 8 C -0.236 4.236 9 C -0.017 4.017 10 N -0.268 5.268 11 C 0.298 3.702 12 O -0.371 6.371 13 N -0.340 5.340 14 C -0.026 4.026 15 C -0.173 4.173 16 C -0.158 4.158 17 C -0.173 4.173 18 C 0.052 3.948 19 H 0.093 0.907 20 C -0.156 4.156 21 C 0.023 3.977 22 N -0.400 5.400 23 C -0.369 4.369 24 H 0.107 0.893 25 C -0.194 4.194 26 N -0.587 5.587 27 Si 0.713 3.287 28 H -0.211 1.211 29 H -0.200 1.200 30 H -0.218 1.218 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.162 0.838 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.176 0.824 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.092 0.908 48 H 0.043 0.957 49 H 0.038 0.962 50 H 0.195 0.805 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.317 25.894 -16.827 33.631 hybrid contribution 0.073 -0.668 -1.849 1.967 sum -13.245 25.227 -18.676 34.067 Atomic orbital electron populations 1.22290 0.92557 1.03951 1.03729 1.22154 0.95762 0.97797 0.83090 0.87269 1.86421 1.79663 1.34298 1.17573 1.19924 0.91021 0.87377 0.87111 1.21153 1.05814 1.02475 0.91355 1.21445 0.93951 0.93441 0.97697 1.21985 1.05389 0.96226 0.99988 1.22408 0.92750 0.99132 0.87391 1.67250 1.22089 1.04757 1.32692 1.20170 0.79682 0.86497 0.83888 1.90884 1.42629 1.18307 1.85272 1.48033 1.56564 1.22119 1.07325 1.21971 0.95189 0.85196 1.00268 1.21922 0.97871 1.01866 0.95631 1.21539 1.00167 0.97136 0.96928 1.22093 0.98701 0.97005 0.99465 1.21323 0.94525 0.95301 0.83648 0.90748 1.22290 1.02099 0.92942 0.98274 1.20808 0.96190 0.86053 0.94676 1.42708 1.74991 1.10344 1.11990 1.19080 1.31247 0.93378 0.93202 0.89333 1.24652 1.00935 0.96530 0.97249 1.69708 1.47690 1.08699 1.32554 0.86547 0.77544 0.78782 0.85841 1.21128 1.19994 1.21821 0.89914 0.90871 0.91042 0.83812 0.84073 0.84554 0.82364 0.91060 0.89372 0.90693 0.91371 0.91732 0.91554 0.91326 0.89583 0.89886 0.90755 0.95677 0.96189 0.80452 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 9.17 37.16 0.34 -1.20 16 2 C 0.07 0.84 2.05 -27.88 -0.06 0.79 16 3 H 0.11 1.14 6.31 -51.93 -0.33 0.81 16 4 O -0.27 -3.79 9.33 -38.27 -0.36 -4.15 16 5 C 0.32 3.80 7.45 -17.12 -0.13 3.68 16 6 C -0.19 -1.85 10.04 -39.27 -0.39 -2.24 16 7 C -0.04 -0.28 10.17 -39.31 -0.40 -0.68 16 8 C -0.22 -1.35 10.11 -39.43 -0.40 -1.75 16 9 C 0.14 1.01 11.18 -17.56 -0.20 0.82 16 10 N -0.54 -5.50 8.65 -13.33 -0.12 -5.62 16 11 C 0.51 7.38 6.95 -10.98 -0.08 7.30 16 12 O -0.50 -9.46 11.96 -13.99 -0.17 -9.63 16 13 N -0.60 -7.26 2.97 -165.23 -0.49 -7.75 16 14 C 0.10 0.76 5.72 -3.71 -0.02 0.74 16 15 C -0.13 -0.96 6.09 -26.61 -0.16 -1.13 16 16 C -0.12 -1.03 5.88 -26.67 -0.16 -1.19 16 17 C -0.13 -1.60 4.88 -26.60 -0.13 -1.73 16 18 C 0.15 2.11 3.00 -67.61 -0.20 1.91 16 19 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 20 C -0.12 -2.17 3.25 -26.73 -0.09 -2.26 16 21 C 0.15 3.20 6.05 -4.04 -0.02 3.17 16 22 N -0.76 -19.99 5.41 -59.91 -0.32 -20.31 16 23 C -0.24 -7.26 10.47 -15.06 -0.16 -7.42 16 24 H 0.09 2.83 8.06 -52.49 -0.42 2.40 16 25 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 26 N -0.94 -30.88 13.97 55.49 0.78 -30.11 16 27 Si 0.88 23.97 27.74 -169.99 -4.71 19.25 16 28 H -0.28 -7.65 7.11 56.52 0.40 -7.24 16 29 H -0.27 -7.26 6.52 56.52 0.37 -6.89 16 30 H -0.29 -7.89 7.11 56.52 0.40 -7.49 16 31 H 0.08 0.57 5.74 -51.93 -0.30 0.28 16 32 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 35 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 36 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 37 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.57 4.12 -51.93 -0.21 0.35 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.09 1.08 6.67 -51.93 -0.35 0.73 16 46 H 0.08 1.71 6.44 -51.93 -0.33 1.37 16 47 H 0.07 1.50 7.04 -51.93 -0.37 1.13 16 48 H 0.03 0.52 6.35 -51.93 -0.33 0.19 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.36 9.68 5.53 -40.82 -0.23 9.46 16 51 H 0.26 8.07 8.31 -40.82 -0.34 7.73 16 LS Contribution 396.93 15.07 5.98 5.98 Total: -1.00 -37.71 396.93 -9.71 -47.42 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -7.95 Total: 6.14 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -2.35 Total: -1.23 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: -0.16 Total: -63.79 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.52 Total: -13.78 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -4.71 Total: 19.25 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.71 -9.71 -47.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271600102.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.521 kcal (2) G-P(sol) polarization free energy of solvation -37.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds