Wall clock time and date at job start Wed Apr 1 2020 04:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47261 * 2 1 4 4 O 1.42903 * 109.47223 * 239.99413 * 2 1 3 5 5 C 1.35677 * 116.99441 * 90.00116 * 4 2 1 6 6 C 1.38927 * 119.67872 * 179.97438 * 5 4 2 7 7 C 1.38382 * 119.10819 * 179.97438 * 6 5 4 8 8 C 1.38830 * 118.48649 * 0.02562 * 7 6 5 9 9 C 1.38053 * 119.28849 * 359.97438 * 8 7 6 10 10 N 1.31964 * 120.83332 * 359.74789 * 9 8 7 11 11 C 1.50699 * 109.46760 * 119.99762 * 2 1 3 12 12 O 1.21283 * 119.99817 * 106.50818 * 11 2 1 13 13 N 1.34780 * 120.00142 * 286.50297 * 11 2 1 14 14 C 1.46924 * 120.62586 * 5.41447 * 13 11 2 15 15 C 1.53195 * 108.77533 * 126.41400 * 14 13 11 16 16 C 1.53044 * 109.31346 * 54.62748 * 15 14 13 17 17 C 1.53074 * 109.65882 * 298.70659 * 16 15 14 18 18 C 1.46921 * 120.62964 * 185.43321 * 13 11 2 19 19 H 1.09003 * 109.58446 * 113.66003 * 18 13 11 20 20 C 1.52998 * 109.58827 * 353.37783 * 18 13 11 21 21 C 1.53005 * 109.47114 * 179.91035 * 20 18 13 22 22 N 1.46492 * 109.47380 * 175.43933 * 21 20 18 23 23 C 1.36937 * 120.00181 * 179.97438 * 22 21 20 24 24 H 1.07992 * 120.00080 * 0.02562 * 23 22 21 25 25 C 1.38808 * 119.99836 * 180.02562 * 23 22 21 26 26 N 1.31618 * 120.00169 * 180.02562 * 25 23 22 27 27 Si 1.86803 * 120.00154 * 359.97438 * 25 23 22 28 28 H 1.48505 * 109.46891 * 269.99946 * 27 25 23 29 29 H 1.48489 * 109.47148 * 30.00278 * 27 25 23 30 30 H 1.48502 * 109.46998 * 150.00446 * 27 25 23 31 31 H 1.09004 * 109.47219 * 304.61021 * 1 2 3 32 32 H 1.09009 * 109.46549 * 64.60457 * 1 2 3 33 33 H 1.08991 * 109.47501 * 184.60216 * 1 2 3 34 34 H 1.07992 * 120.44560 * 0.02562 * 6 5 4 35 35 H 1.07998 * 120.75410 * 179.97438 * 7 6 5 36 36 H 1.07998 * 120.35595 * 180.02562 * 8 7 6 37 37 H 1.07998 * 119.57784 * 179.97438 * 9 8 7 38 38 H 1.08999 * 109.58399 * 246.19283 * 14 13 11 39 39 H 1.08994 * 109.59414 * 6.48512 * 14 13 11 40 40 H 1.08999 * 109.50048 * 174.58344 * 15 14 13 41 41 H 1.09004 * 109.49637 * 294.68234 * 15 14 13 42 42 H 1.09004 * 109.45342 * 58.65949 * 16 15 14 43 43 H 1.08999 * 109.46084 * 178.61564 * 16 15 14 44 44 H 1.08998 * 109.38561 * 301.26646 * 17 16 15 45 45 H 1.09007 * 109.61830 * 181.16786 * 17 16 15 46 46 H 1.08993 * 109.47042 * 59.91174 * 20 18 13 47 47 H 1.08998 * 109.47332 * 299.90478 * 20 18 13 48 48 H 1.08996 * 109.46943 * 55.43380 * 21 20 18 49 49 H 1.09007 * 109.47006 * 295.44139 * 21 20 18 50 50 H 0.97010 * 119.99953 * 0.02562 * 22 21 20 51 51 H 0.96999 * 120.00373 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.2117 0.0828 -2.2741 6 6 2.6748 -0.5151 -3.4395 7 6 2.8796 0.2677 -4.5622 8 6 2.6131 1.6276 -4.4788 9 6 2.1547 2.1542 -3.2878 10 7 1.9639 1.3812 -2.2354 11 6 2.0322 -0.7104 1.2305 12 8 2.5157 -1.8186 1.1360 13 7 1.9442 -0.1141 2.4360 14 6 1.2557 1.1753 2.5848 15 6 0.1942 1.0437 3.6816 16 6 0.8527 0.5310 4.9644 17 6 1.4622 -0.8507 4.7137 18 6 2.5353 -0.7409 3.6261 19 1 3.3618 -0.1295 3.9887 20 6 3.0485 -2.1373 3.2690 21 6 3.6655 -2.7866 4.5095 22 7 4.0582 -4.1627 4.1963 23 6 4.6370 -4.9456 5.1592 24 1 4.8036 -4.5488 6.1496 25 6 5.0095 -6.2494 4.8621 26 7 5.5654 -7.0021 5.7878 27 14 4.7207 -6.9361 3.1491 28 1 3.3788 -7.5695 3.0895 29 1 4.7928 -5.8348 2.1557 30 1 5.7608 -7.9501 2.8405 31 1 -0.3634 0.5837 0.8458 32 1 -0.3633 0.4408 -0.9285 33 1 -0.3634 -1.0242 0.0824 34 1 2.8715 -1.5765 -3.4691 35 1 3.2393 -0.1693 -5.4819 36 1 2.7619 2.2665 -5.3367 37 1 1.9463 3.2116 -3.2177 38 1 1.9761 1.9441 2.8640 39 1 0.7790 1.4459 1.6428 40 1 -0.2580 2.0176 3.8689 41 1 -0.5747 0.3406 3.3613 42 1 1.6382 1.2220 5.2705 43 1 0.1042 0.4598 5.7535 44 1 0.6810 -1.5366 4.3861 45 1 1.9129 -1.2242 5.6332 46 1 3.8035 -2.0579 2.4870 47 1 2.2196 -2.7490 2.9131 48 1 2.9346 -2.7924 5.3181 49 1 4.5437 -2.2193 4.8178 50 1 3.9089 -4.5191 3.3064 51 1 5.8254 -7.9133 5.5803 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271600102.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:58 Heat of formation + Delta-G solvation = -27.024775 kcal Electronic energy + Delta-G solvation = -31311.955464 eV Core-core repulsion = 27211.936802 eV Total energy + Delta-G solvation = -4100.018662 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.14190 -41.33578 -39.26060 -38.21080 -37.20959 -35.00077 -34.04777 -33.45507 -33.14772 -32.31391 -30.93248 -29.59236 -27.02481 -25.59682 -25.29540 -24.58444 -24.18255 -23.31287 -22.33043 -21.88421 -20.13342 -19.77176 -19.51414 -18.16924 -17.55819 -17.06054 -16.96907 -16.79388 -16.53380 -16.34244 -15.91878 -15.66375 -15.50106 -15.41841 -15.10399 -14.87823 -14.87208 -14.50443 -14.29262 -14.14499 -14.02533 -13.86081 -13.71304 -13.37465 -13.06607 -12.97245 -12.89766 -12.83618 -12.57900 -12.29187 -12.21383 -12.14265 -11.95784 -11.87889 -11.82740 -11.52943 -11.41798 -11.00778 -10.92030 -10.62451 -10.11945 -9.62617 -9.49485 -9.33244 -8.08667 -5.40881 0.18707 0.30166 1.32423 1.33116 1.35878 1.42801 1.46594 2.29946 2.42358 2.80971 3.20970 3.22889 3.27473 3.57490 3.78049 3.81745 3.87434 3.92264 3.97615 4.03719 4.08390 4.10796 4.20823 4.22098 4.30818 4.35003 4.41707 4.48119 4.55969 4.60121 4.66062 4.72786 4.76347 4.79058 4.88292 4.95788 5.03958 5.06539 5.09949 5.16680 5.24036 5.28367 5.33892 5.34690 5.49164 5.51684 5.63063 5.69683 6.14809 6.17028 6.33421 6.82704 7.01445 7.07373 7.79578 7.98559 9.12819 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009595 B = 0.003030 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.404063 B = 9237.383211 C =11722.080567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.079 3.921 3 H 0.124 0.876 4 O -0.308 6.308 5 C 0.293 3.707 6 C -0.211 4.211 7 C -0.038 4.038 8 C -0.204 4.204 9 C 0.130 3.870 10 N -0.554 5.554 11 C 0.503 3.497 12 O -0.557 6.557 13 N -0.598 5.598 14 C 0.089 3.911 15 C -0.130 4.130 16 C -0.116 4.116 17 C -0.131 4.131 18 C 0.157 3.843 19 H 0.087 0.913 20 C -0.097 4.097 21 C 0.148 3.852 22 N -0.763 5.763 23 C -0.234 4.234 24 H 0.063 0.937 25 C -0.059 4.059 26 N -0.979 5.979 27 Si 0.950 3.050 28 H -0.277 1.277 29 H -0.268 1.268 30 H -0.286 1.286 31 H 0.109 0.891 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.135 0.865 35 H 0.169 0.831 36 H 0.172 0.828 37 H 0.193 0.807 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.052 0.948 45 H 0.075 0.925 46 H 0.058 0.942 47 H 0.052 0.948 48 H 0.036 0.964 49 H 0.022 0.978 50 H 0.361 0.639 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.974 30.336 -19.856 39.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.020 3.980 3 H 0.141 0.859 4 O -0.215 6.215 5 C 0.116 3.884 6 C -0.232 4.232 7 C -0.063 4.063 8 C -0.224 4.224 9 C -0.025 4.025 10 N -0.279 5.279 11 C 0.290 3.710 12 O -0.435 6.435 13 N -0.332 5.332 14 C -0.031 4.031 15 C -0.168 4.168 16 C -0.153 4.153 17 C -0.170 4.170 18 C 0.054 3.946 19 H 0.105 0.895 20 C -0.135 4.135 21 C 0.022 3.978 22 N -0.408 5.408 23 C -0.365 4.365 24 H 0.081 0.919 25 C -0.251 4.251 26 N -0.630 5.630 27 Si 0.777 3.223 28 H -0.203 1.203 29 H -0.194 1.194 30 H -0.212 1.212 31 H 0.127 0.873 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.153 0.847 35 H 0.187 0.813 36 H 0.190 0.810 37 H 0.209 0.791 38 H 0.109 0.891 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.071 0.929 45 H 0.094 0.906 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.054 0.946 49 H 0.040 0.960 50 H 0.193 0.807 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.920 29.796 -18.856 38.288 hybrid contribution 0.581 -1.711 -1.232 2.187 sum -14.339 28.085 -20.088 37.388 Atomic orbital electron populations 1.22255 0.90702 1.03361 1.05222 1.22161 0.96957 0.97461 0.81448 0.85873 1.86370 1.80556 1.35965 1.18654 1.20138 0.93082 0.88258 0.86958 1.21337 1.07023 1.02677 0.92179 1.21838 0.92948 0.93901 0.97629 1.22425 1.03167 0.96076 1.00700 1.23097 0.91955 1.00374 0.87088 1.67229 1.22478 1.04113 1.34039 1.20827 0.78833 0.86036 0.85285 1.90849 1.45493 1.20943 1.86196 1.48129 1.55922 1.23198 1.05986 1.22350 0.95793 0.83212 1.01786 1.21936 0.97225 1.03438 0.94190 1.21532 1.00736 0.94811 0.98222 1.22040 0.97662 0.99294 0.97971 1.21189 0.95762 0.92687 0.84946 0.89519 1.21992 1.00393 0.95511 0.95623 1.21016 0.96509 0.83798 0.96512 1.42829 1.74807 1.12007 1.11122 1.19098 1.30571 0.93882 0.92941 0.91876 1.25404 1.01391 0.97009 1.01290 1.69854 1.49251 1.09161 1.34732 0.85483 0.77671 0.78087 0.81013 1.20330 1.19381 1.21236 0.87288 0.90123 0.92873 0.84704 0.81328 0.81026 0.79064 0.89075 0.87552 0.87330 0.91937 0.90505 0.90444 0.92884 0.90617 0.92379 0.92974 0.94648 0.95958 0.80659 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.17 71.98 0.66 -2.09 16 2 C 0.08 1.85 2.05 29.85 0.06 1.91 16 3 H 0.12 2.43 6.31 -2.39 -0.02 2.41 16 4 O -0.31 -8.97 9.33 -71.27 -0.66 -9.63 16 5 C 0.29 6.96 7.45 84.80 0.63 7.59 16 6 C -0.21 -4.24 10.04 22.47 0.23 -4.01 16 7 C -0.04 -0.47 10.17 22.45 0.23 -0.24 16 8 C -0.20 -1.88 10.11 22.37 0.23 -1.65 16 9 C 0.13 1.52 11.18 84.63 0.95 2.47 16 10 N -0.55 -10.45 8.65 -308.95 -2.67 -13.12 16 11 C 0.50 14.84 6.95 87.66 0.61 15.45 16 12 O -0.56 -22.55 11.96 15.65 0.19 -22.36 16 13 N -0.60 -13.87 2.97 -795.05 -2.36 -16.23 16 14 C 0.09 1.13 5.72 86.36 0.49 1.62 16 15 C -0.13 -1.38 6.09 30.67 0.19 -1.19 16 16 C -0.12 -1.65 5.88 30.63 0.18 -1.47 16 17 C -0.13 -3.02 4.88 30.68 0.15 -2.87 16 18 C 0.16 4.26 3.00 44.97 0.14 4.39 16 19 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 20 C -0.10 -3.71 3.25 30.60 0.10 -3.61 16 21 C 0.15 6.47 6.05 86.38 0.52 6.99 16 22 N -0.76 -41.44 5.41 -343.47 -1.86 -43.30 16 23 C -0.23 -14.63 10.47 84.03 0.88 -13.75 16 24 H 0.06 4.19 8.06 -2.91 -0.02 4.17 16 25 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 26 N -0.98 -65.99 13.97 21.65 0.30 -65.69 16 27 Si 0.95 50.75 27.74 68.60 1.90 52.65 16 28 H -0.28 -14.40 7.11 99.48 0.71 -13.70 16 29 H -0.27 -13.95 6.52 99.48 0.65 -13.30 16 30 H -0.29 -14.95 7.11 99.48 0.71 -14.25 16 31 H 0.11 1.23 5.74 -2.38 -0.01 1.21 16 32 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 35 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16 36 H 0.17 0.36 8.06 -2.91 -0.02 0.33 16 37 H 0.19 0.82 8.06 -2.91 -0.02 0.79 16 38 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.11 0.99 4.12 -2.39 -0.01 0.98 16 40 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.08 1.88 6.67 -2.38 -0.02 1.86 16 46 H 0.06 2.52 6.44 -2.39 -0.02 2.51 16 47 H 0.05 2.22 7.04 -2.39 -0.02 2.20 16 48 H 0.04 1.49 6.35 -2.39 -0.02 1.48 16 49 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 50 H 0.36 19.71 5.53 -92.70 -0.51 19.20 16 51 H 0.26 16.56 8.31 -92.71 -0.77 15.79 16 Total: -1.00 -87.04 396.93 1.90 -85.14 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.37 Total: 26.28 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 6.70 Total: 6.25 kcal Atomic # 7 Polarization: -131.74 SS G_CDS: -6.59 Total: -138.33 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.48 Total: -31.99 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 1.90 Total: 52.65 kcal Total: -87.04 1.90 -85.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271600102.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.118 kcal (2) G-P(sol) polarization free energy of solvation -87.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds