Wall clock time and date at job start Wed Apr 1 2020 04:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47298 * 2 1 4 4 O 1.42903 * 109.46991 * 119.99759 * 2 1 3 5 5 C 1.35675 * 116.99673 * 269.99503 * 4 2 1 6 6 C 1.38922 * 119.68152 * 179.72960 * 5 4 2 7 7 C 1.38380 * 119.11002 * 179.71246 * 6 5 4 8 8 C 1.38828 * 118.48501 * 0.55300 * 7 6 5 9 9 C 1.38040 * 119.28926 * 359.72881 * 8 7 6 10 10 N 1.31969 * 120.83429 * 359.97438 * 9 8 7 11 11 C 1.50704 * 109.47092 * 239.99500 * 2 1 3 12 12 O 1.21282 * 120.00085 * 250.08897 * 11 2 1 13 13 N 1.34774 * 119.99365 * 70.08926 * 11 2 1 14 14 C 1.46919 * 120.63666 * 5.72846 * 13 11 2 15 15 C 1.53198 * 108.89255 * 233.67301 * 14 13 11 16 16 C 1.53043 * 109.30954 * 305.29099 * 15 14 13 17 17 C 1.53040 * 109.53821 * 61.36710 * 16 15 14 18 18 C 1.47206 * 120.80717 * 185.85932 * 13 11 2 19 19 H 1.09006 * 109.56437 * 246.16278 * 18 13 11 20 20 C 1.53001 * 109.53919 * 6.54615 * 18 13 11 21 21 C 1.52993 * 109.47422 * 178.72403 * 20 18 13 22 22 N 1.46500 * 109.47125 * 184.90713 * 21 20 18 23 23 C 1.36938 * 119.99717 * 179.97438 * 22 21 20 24 24 H 1.07998 * 120.00295 * 359.97438 * 23 22 21 25 25 C 1.38824 * 119.99706 * 179.97438 * 23 22 21 26 26 N 1.31618 * 119.99818 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99890 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47126 * 90.00089 * 27 25 23 29 29 H 1.48502 * 109.46907 * 210.00005 * 27 25 23 30 30 H 1.48496 * 109.47181 * 329.99890 * 27 25 23 31 31 H 1.09001 * 109.47080 * 295.01162 * 1 2 3 32 32 H 1.09003 * 109.47491 * 55.00844 * 1 2 3 33 33 H 1.08999 * 109.47516 * 175.01502 * 1 2 3 34 34 H 1.08004 * 120.44759 * 0.02562 * 6 5 4 35 35 H 1.08007 * 120.75728 * 180.28059 * 7 6 5 36 36 H 1.08001 * 120.34992 * 179.70582 * 8 7 6 37 37 H 1.07997 * 119.58125 * 179.97438 * 9 8 7 38 38 H 1.09004 * 109.59352 * 113.81273 * 14 13 11 39 39 H 1.09001 * 109.58858 * 353.52872 * 14 13 11 40 40 H 1.08995 * 109.49810 * 65.24108 * 15 14 13 41 41 H 1.08998 * 109.49496 * 185.34140 * 15 14 13 42 42 H 1.09004 * 109.45562 * 181.38557 * 16 15 14 43 43 H 1.09000 * 109.46052 * 301.35759 * 16 15 14 44 44 H 1.09001 * 109.49548 * 58.58412 * 17 16 15 45 45 H 1.08998 * 109.49407 * 178.65444 * 17 16 15 46 46 H 1.09003 * 109.46629 * 298.72125 * 20 18 13 47 47 H 1.08998 * 109.46930 * 58.71639 * 20 18 13 48 48 H 1.08998 * 109.47332 * 304.90630 * 21 20 18 49 49 H 1.08999 * 109.47276 * 64.90339 * 21 20 18 50 50 H 0.97002 * 119.99961 * 359.97438 * 22 21 20 51 51 H 0.97003 * 119.99946 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2116 0.0831 2.2741 6 6 2.6688 -0.5156 3.4414 7 6 2.8800 0.2683 4.5620 8 6 2.6140 1.6283 4.4783 9 6 2.1558 2.1548 3.2874 10 7 1.9697 1.3825 2.2335 11 6 2.0323 -0.7105 -1.2304 12 8 2.5717 -1.7920 -1.1285 13 7 1.8821 -0.1441 -2.4441 14 6 1.3455 1.2175 -2.5736 15 6 0.1565 1.1923 -3.5393 16 6 0.5939 0.5636 -4.8643 17 6 1.0495 -0.8770 -4.6215 18 6 2.2486 -0.8753 -3.6680 19 1 3.0956 -0.3839 -4.1470 20 6 2.6221 -2.3155 -3.3111 21 6 2.9721 -3.0828 -4.5876 22 7 3.2157 -4.4899 -4.2602 23 6 3.5470 -5.3757 -5.2505 24 1 3.6284 -5.0373 -6.2728 25 6 3.7784 -6.7089 -4.9402 26 7 3.6798 -7.1213 -3.6942 27 14 4.2297 -7.9175 -6.2911 28 1 5.7058 -7.9557 -6.4483 29 1 3.7352 -9.2705 -5.9302 30 1 3.6068 -7.4873 -7.5686 31 1 -0.3633 0.4345 0.9313 32 1 -0.3634 0.5893 -0.8419 33 1 -0.3634 -1.0237 -0.0893 34 1 2.8617 -1.5778 3.4724 35 1 3.2393 -0.1687 5.4820 36 1 2.7636 2.2674 5.3360 37 1 1.9469 3.2120 3.2171 38 1 2.1188 1.8796 -2.9632 39 1 1.0162 1.5748 -1.5979 40 1 -0.6516 0.6029 -3.1062 41 1 -0.1898 2.2105 -3.7165 42 1 -0.2437 0.5670 -5.5618 43 1 1.4187 1.1392 -5.2845 44 1 0.2330 -1.4470 -4.1781 45 1 1.3383 -1.3318 -5.5690 46 1 3.4823 -2.3124 -2.6417 47 1 1.7788 -2.7977 -2.8169 48 1 2.1439 -3.0120 -5.2927 49 1 3.8683 -2.6535 -5.0355 50 1 3.1423 -4.7939 -3.3420 51 1 3.8411 -8.0529 -3.4774 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271600104.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:04 Heat of formation + Delta-G solvation = -6.770193 kcal Electronic energy + Delta-G solvation = -31204.797857 eV Core-core repulsion = 27105.657499 eV Total energy + Delta-G solvation = -4099.140358 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.16005 -40.40547 -38.35583 -37.11865 -35.23846 -33.51858 -32.77564 -32.74127 -31.75508 -30.56643 -30.10641 -27.86747 -25.65750 -24.61734 -24.11189 -23.78882 -23.15305 -22.09690 -21.01074 -20.63450 -19.05647 -18.71917 -17.36333 -16.96447 -16.57674 -16.11966 -16.09590 -15.80513 -15.19949 -14.84807 -14.69468 -14.56370 -14.45148 -14.14728 -13.99245 -13.59907 -13.46681 -13.38261 -13.11407 -12.97783 -12.78915 -12.66049 -12.45127 -12.25808 -12.08695 -11.96448 -11.36258 -11.35136 -11.08070 -10.99126 -10.89020 -10.78387 -10.69785 -10.41125 -10.32312 -10.24589 -9.93047 -9.91567 -9.56185 -8.87444 -8.74607 -8.62855 -8.51311 -6.75259 -5.61954 -2.90064 0.86144 0.96497 2.35179 2.60938 3.22115 3.48958 3.51521 3.55511 3.58003 3.95780 4.25221 4.53210 4.55100 4.67038 4.69948 4.71557 4.75785 4.78983 4.80343 4.90689 4.92556 5.01411 5.19292 5.20948 5.31260 5.37108 5.43159 5.45700 5.56536 5.61143 5.64994 5.68901 5.77502 5.79000 5.87671 5.89871 5.96977 6.00828 6.11676 6.14869 6.28409 6.40359 6.44487 6.61360 6.69747 6.98951 7.11475 7.21910 7.40884 7.53613 7.81123 8.25287 8.56954 9.67259 10.29734 10.64527 11.61013 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010998 B = 0.002633 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.312100 B =10630.505368 C =12834.681510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.072 3.928 3 H 0.109 0.891 4 O -0.273 6.273 5 C 0.326 3.674 6 C -0.187 4.187 7 C -0.040 4.040 8 C -0.217 4.217 9 C 0.138 3.862 10 N -0.545 5.545 11 C 0.512 3.488 12 O -0.493 6.493 13 N -0.606 5.606 14 C 0.100 3.900 15 C -0.136 4.136 16 C -0.120 4.120 17 C -0.134 4.134 18 C 0.155 3.845 19 H 0.073 0.927 20 C -0.119 4.119 21 C 0.148 3.852 22 N -0.731 5.731 23 C -0.236 4.236 24 H 0.069 0.931 25 C -0.017 4.017 26 N -0.932 5.932 27 Si 0.906 3.094 28 H -0.291 1.291 29 H -0.292 1.292 30 H -0.283 1.283 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.158 0.842 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.068 0.932 48 H 0.017 0.983 49 H 0.012 0.988 50 H 0.385 0.615 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.168 26.895 13.303 31.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.012 3.988 3 H 0.127 0.873 4 O -0.178 6.178 5 C 0.147 3.853 6 C -0.208 4.208 7 C -0.065 4.065 8 C -0.237 4.237 9 C -0.017 4.017 10 N -0.269 5.269 11 C 0.297 3.703 12 O -0.366 6.366 13 N -0.342 5.342 14 C -0.023 4.023 15 C -0.174 4.174 16 C -0.158 4.158 17 C -0.172 4.172 18 C 0.053 3.947 19 H 0.091 0.909 20 C -0.157 4.157 21 C 0.020 3.980 22 N -0.375 5.375 23 C -0.367 4.367 24 H 0.087 0.913 25 C -0.213 4.213 26 N -0.581 5.581 27 Si 0.737 3.263 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.209 1.209 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.163 0.837 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.176 0.824 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.110 0.890 47 H 0.086 0.914 48 H 0.034 0.966 49 H 0.030 0.970 50 H 0.219 0.781 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.101 26.273 12.368 30.148 hybrid contribution 0.411 -0.869 0.265 0.998 sum -7.691 25.404 12.633 29.396 Atomic orbital electron populations 1.22222 0.92493 1.03962 1.03589 1.22155 0.95759 0.97747 0.83142 0.87329 1.86434 1.79588 1.34239 1.17560 1.19933 0.90937 0.87324 0.87150 1.21167 1.05755 1.02507 0.91335 1.21442 0.93970 0.93416 0.97719 1.21971 1.05498 0.96245 0.99972 1.22393 0.92832 0.99114 0.87394 1.67250 1.22131 1.04796 1.32699 1.20157 0.79938 0.86300 0.83857 1.90885 1.40326 1.20235 1.85170 1.48112 1.64732 1.15785 1.05571 1.21877 0.96358 0.83373 1.00708 1.21943 0.97704 1.01438 0.96287 1.21538 1.01160 0.96439 0.96617 1.22083 0.98277 0.96416 1.00412 1.21379 0.96273 0.93819 0.83237 0.90925 1.22265 1.03938 0.91203 0.98316 1.20808 0.96633 0.86326 0.94242 1.42361 1.83866 1.02799 1.08481 1.19245 1.38633 0.89396 0.89465 0.91328 1.24758 1.03078 0.97201 0.96274 1.69688 1.56380 1.15568 1.16467 0.86197 0.78064 0.80944 0.81054 1.21821 1.21840 1.20860 0.90980 0.90136 0.91031 0.83727 0.84092 0.84613 0.82432 0.91084 0.89710 0.91339 0.90779 0.91647 0.91779 0.91333 0.89718 0.88969 0.91368 0.96581 0.96974 0.78084 0.93625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 9.20 37.16 0.34 -1.32 16 2 C 0.07 0.90 2.04 -27.88 -0.06 0.84 16 3 H 0.11 1.19 5.97 -51.93 -0.31 0.88 16 4 O -0.27 -3.98 9.32 -38.43 -0.36 -4.33 16 5 C 0.33 3.99 7.45 -17.12 -0.13 3.86 16 6 C -0.19 -1.94 10.04 -39.28 -0.39 -2.33 16 7 C -0.04 -0.30 10.17 -39.31 -0.40 -0.70 16 8 C -0.22 -1.44 10.11 -39.44 -0.40 -1.84 16 9 C 0.14 1.06 11.18 -17.57 -0.20 0.87 16 10 N -0.54 -5.77 8.65 -13.33 -0.12 -5.88 16 11 C 0.51 7.82 6.88 -10.98 -0.08 7.74 16 12 O -0.49 -9.92 12.13 -14.15 -0.17 -10.09 16 13 N -0.61 -7.71 2.98 -165.00 -0.49 -8.21 16 14 C 0.10 0.85 5.59 -3.71 -0.02 0.83 16 15 C -0.14 -1.03 5.96 -26.61 -0.16 -1.18 16 16 C -0.12 -1.08 5.88 -26.69 -0.16 -1.24 16 17 C -0.13 -1.66 4.83 -26.61 -0.13 -1.79 16 18 C 0.16 2.24 3.03 -67.44 -0.20 2.03 16 19 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 20 C -0.12 -2.32 3.29 -26.73 -0.09 -2.41 16 21 C 0.15 3.29 6.03 -4.05 -0.02 3.26 16 22 N -0.73 -20.54 5.60 -59.91 -0.34 -20.88 16 23 C -0.24 -7.09 9.99 -15.05 -0.15 -7.24 16 24 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 25 C -0.02 -0.53 5.50 -17.43 -0.10 -0.63 16 26 N -0.93 -30.14 13.06 55.49 0.72 -29.41 16 27 Si 0.91 23.53 29.55 -169.99 -5.02 18.51 16 28 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 29 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 30 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.64 5.70 -51.93 -0.30 0.34 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.14 1.43 8.06 -52.48 -0.42 1.00 16 35 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 36 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 37 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.60 4.57 -51.93 -0.24 0.36 16 40 H 0.07 0.55 7.75 -51.93 -0.40 0.15 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.08 1.11 6.64 -51.93 -0.34 0.76 16 46 H 0.09 2.03 6.20 -51.93 -0.32 1.71 16 47 H 0.07 1.46 7.29 -51.93 -0.38 1.08 16 48 H 0.02 0.35 6.30 -51.93 -0.33 0.02 16 49 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.39 11.63 7.67 -40.82 -0.31 11.32 16 51 H 0.25 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 399.53 15.07 6.02 6.02 Total: -1.00 -37.11 399.53 -10.06 -47.17 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -7.97 Total: 8.34 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -2.34 Total: -1.23 kcal Atomic # 7 Polarization: -64.16 SS G_CDS: -0.22 Total: -64.38 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.53 Total: -14.42 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -5.02 Total: 18.51 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.11 -10.06 -47.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271600104.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.396 kcal (2) G-P(sol) polarization free energy of solvation -37.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds