Wall clock time and date at job start Wed Apr 1 2020 04:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47298 * 2 1 4 4 O 1.42903 * 109.46991 * 119.99759 * 2 1 3 5 5 C 1.35675 * 116.99673 * 269.99503 * 4 2 1 6 6 C 1.38922 * 119.68152 * 179.72960 * 5 4 2 7 7 C 1.38380 * 119.11002 * 179.71246 * 6 5 4 8 8 C 1.38828 * 118.48501 * 0.55300 * 7 6 5 9 9 C 1.38040 * 119.28926 * 359.72881 * 8 7 6 10 10 N 1.31969 * 120.83429 * 359.97438 * 9 8 7 11 11 C 1.50704 * 109.47092 * 239.99500 * 2 1 3 12 12 O 1.21282 * 120.00085 * 250.08897 * 11 2 1 13 13 N 1.34774 * 119.99365 * 70.08926 * 11 2 1 14 14 C 1.46919 * 120.63666 * 5.72846 * 13 11 2 15 15 C 1.53198 * 108.89255 * 233.67301 * 14 13 11 16 16 C 1.53043 * 109.30954 * 305.29099 * 15 14 13 17 17 C 1.53040 * 109.53821 * 61.36710 * 16 15 14 18 18 C 1.47206 * 120.80717 * 185.85932 * 13 11 2 19 19 H 1.09006 * 109.56437 * 246.16278 * 18 13 11 20 20 C 1.53001 * 109.53919 * 6.54615 * 18 13 11 21 21 C 1.52993 * 109.47422 * 178.72403 * 20 18 13 22 22 N 1.46500 * 109.47125 * 184.90713 * 21 20 18 23 23 C 1.36938 * 119.99717 * 179.97438 * 22 21 20 24 24 H 1.07998 * 120.00295 * 359.97438 * 23 22 21 25 25 C 1.38824 * 119.99706 * 179.97438 * 23 22 21 26 26 N 1.31618 * 119.99818 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99890 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47126 * 90.00089 * 27 25 23 29 29 H 1.48502 * 109.46907 * 210.00005 * 27 25 23 30 30 H 1.48496 * 109.47181 * 329.99890 * 27 25 23 31 31 H 1.09001 * 109.47080 * 295.01162 * 1 2 3 32 32 H 1.09003 * 109.47491 * 55.00844 * 1 2 3 33 33 H 1.08999 * 109.47516 * 175.01502 * 1 2 3 34 34 H 1.08004 * 120.44759 * 0.02562 * 6 5 4 35 35 H 1.08007 * 120.75728 * 180.28059 * 7 6 5 36 36 H 1.08001 * 120.34992 * 179.70582 * 8 7 6 37 37 H 1.07997 * 119.58125 * 179.97438 * 9 8 7 38 38 H 1.09004 * 109.59352 * 113.81273 * 14 13 11 39 39 H 1.09001 * 109.58858 * 353.52872 * 14 13 11 40 40 H 1.08995 * 109.49810 * 65.24108 * 15 14 13 41 41 H 1.08998 * 109.49496 * 185.34140 * 15 14 13 42 42 H 1.09004 * 109.45562 * 181.38557 * 16 15 14 43 43 H 1.09000 * 109.46052 * 301.35759 * 16 15 14 44 44 H 1.09001 * 109.49548 * 58.58412 * 17 16 15 45 45 H 1.08998 * 109.49407 * 178.65444 * 17 16 15 46 46 H 1.09003 * 109.46629 * 298.72125 * 20 18 13 47 47 H 1.08998 * 109.46930 * 58.71639 * 20 18 13 48 48 H 1.08998 * 109.47332 * 304.90630 * 21 20 18 49 49 H 1.08999 * 109.47276 * 64.90339 * 21 20 18 50 50 H 0.97002 * 119.99961 * 359.97438 * 22 21 20 51 51 H 0.97003 * 119.99946 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2116 0.0831 2.2741 6 6 2.6688 -0.5156 3.4414 7 6 2.8800 0.2683 4.5620 8 6 2.6140 1.6283 4.4783 9 6 2.1558 2.1548 3.2874 10 7 1.9697 1.3825 2.2335 11 6 2.0323 -0.7105 -1.2304 12 8 2.5717 -1.7920 -1.1285 13 7 1.8821 -0.1441 -2.4441 14 6 1.3455 1.2175 -2.5736 15 6 0.1565 1.1923 -3.5393 16 6 0.5939 0.5636 -4.8643 17 6 1.0495 -0.8770 -4.6215 18 6 2.2486 -0.8753 -3.6680 19 1 3.0956 -0.3839 -4.1470 20 6 2.6221 -2.3155 -3.3111 21 6 2.9721 -3.0828 -4.5876 22 7 3.2157 -4.4899 -4.2602 23 6 3.5470 -5.3757 -5.2505 24 1 3.6284 -5.0373 -6.2728 25 6 3.7784 -6.7089 -4.9402 26 7 3.6798 -7.1213 -3.6942 27 14 4.2297 -7.9175 -6.2911 28 1 5.7058 -7.9557 -6.4483 29 1 3.7352 -9.2705 -5.9302 30 1 3.6068 -7.4873 -7.5686 31 1 -0.3633 0.4345 0.9313 32 1 -0.3634 0.5893 -0.8419 33 1 -0.3634 -1.0237 -0.0893 34 1 2.8617 -1.5778 3.4724 35 1 3.2393 -0.1687 5.4820 36 1 2.7636 2.2674 5.3360 37 1 1.9469 3.2120 3.2171 38 1 2.1188 1.8796 -2.9632 39 1 1.0162 1.5748 -1.5979 40 1 -0.6516 0.6029 -3.1062 41 1 -0.1898 2.2105 -3.7165 42 1 -0.2437 0.5670 -5.5618 43 1 1.4187 1.1392 -5.2845 44 1 0.2330 -1.4470 -4.1781 45 1 1.3383 -1.3318 -5.5690 46 1 3.4823 -2.3124 -2.6417 47 1 1.7788 -2.7977 -2.8169 48 1 2.1439 -3.0120 -5.2927 49 1 3.8683 -2.6535 -5.0355 50 1 3.1423 -4.7939 -3.3420 51 1 3.8411 -8.0529 -3.4774 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271600104.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:03 Heat of formation + Delta-G solvation = -32.490189 kcal Electronic energy + Delta-G solvation = -31205.913160 eV Core-core repulsion = 27105.657499 eV Total energy + Delta-G solvation = -4100.255660 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.11468 -41.31037 -39.24420 -38.20974 -37.04001 -34.95447 -33.99740 -33.44287 -32.94442 -32.11376 -30.90917 -29.34548 -26.95166 -25.69241 -25.34955 -24.63394 -24.26588 -23.38275 -22.17287 -21.87786 -20.07284 -19.58644 -19.19101 -18.18844 -17.57641 -17.10255 -16.91153 -16.77125 -16.52012 -16.26584 -15.78244 -15.55077 -15.50537 -15.30525 -15.16261 -15.00402 -14.75144 -14.44189 -14.30148 -14.09391 -13.98038 -13.75550 -13.42146 -13.34489 -12.95621 -12.90580 -12.83159 -12.81298 -12.51427 -12.30329 -12.22724 -12.12845 -11.96642 -11.88231 -11.76608 -11.55377 -11.38748 -10.95317 -10.90969 -10.61494 -10.06823 -9.63604 -9.49076 -9.03470 -7.96442 -5.27804 0.19917 0.31259 1.40801 1.43201 1.45234 1.47624 1.56038 2.30629 2.54176 2.82072 3.24869 3.28717 3.35664 3.71321 3.78797 3.82701 3.91573 3.92662 4.04375 4.08267 4.11427 4.11954 4.22055 4.23148 4.35314 4.38549 4.44624 4.55277 4.57212 4.61936 4.67595 4.73432 4.77557 4.80405 4.89672 4.96176 5.03672 5.07086 5.10722 5.17701 5.25015 5.29406 5.35141 5.38113 5.46133 5.50371 5.53835 5.66298 6.16782 6.24142 6.35518 6.83826 7.10661 7.28299 8.04947 8.29717 9.27961 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010998 B = 0.002633 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.312100 B =10630.505368 C =12834.681510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.080 3.920 3 H 0.126 0.874 4 O -0.310 6.310 5 C 0.293 3.707 6 C -0.212 4.212 7 C -0.037 4.037 8 C -0.204 4.204 9 C 0.130 3.870 10 N -0.555 5.555 11 C 0.501 3.499 12 O -0.558 6.558 13 N -0.599 5.599 14 C 0.092 3.908 15 C -0.131 4.131 16 C -0.114 4.114 17 C -0.130 4.130 18 C 0.159 3.841 19 H 0.086 0.914 20 C -0.097 4.097 21 C 0.148 3.852 22 N -0.750 5.750 23 C -0.248 4.248 24 H 0.081 0.919 25 C -0.084 4.084 26 N -0.975 5.975 27 Si 0.984 3.016 28 H -0.285 1.285 29 H -0.294 1.294 30 H -0.264 1.264 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.048 0.952 34 H 0.134 0.866 35 H 0.170 0.830 36 H 0.173 0.827 37 H 0.194 0.806 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.063 0.937 41 H 0.109 0.891 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.050 0.950 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.037 0.963 48 H 0.031 0.969 49 H 0.018 0.982 50 H 0.368 0.632 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.993 30.818 12.868 34.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.021 3.979 3 H 0.144 0.856 4 O -0.217 6.217 5 C 0.116 3.884 6 C -0.233 4.233 7 C -0.062 4.062 8 C -0.223 4.223 9 C -0.025 4.025 10 N -0.279 5.279 11 C 0.289 3.711 12 O -0.436 6.436 13 N -0.334 5.334 14 C -0.029 4.029 15 C -0.169 4.169 16 C -0.152 4.152 17 C -0.168 4.168 18 C 0.056 3.944 19 H 0.104 0.896 20 C -0.135 4.135 21 C 0.021 3.979 22 N -0.392 5.392 23 C -0.380 4.380 24 H 0.099 0.901 25 C -0.276 4.276 26 N -0.626 5.626 27 Si 0.811 3.189 28 H -0.212 1.212 29 H -0.220 1.220 30 H -0.189 1.189 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.067 0.933 34 H 0.152 0.848 35 H 0.187 0.813 36 H 0.191 0.809 37 H 0.210 0.790 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.082 0.918 41 H 0.128 0.872 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.069 0.931 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.056 0.944 48 H 0.049 0.951 49 H 0.036 0.964 50 H 0.199 0.801 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.954 30.293 11.894 33.754 hybrid contribution 0.688 -1.953 0.513 2.133 sum -8.266 28.341 12.407 32.022 Atomic orbital electron populations 1.22182 0.90755 1.03134 1.05157 1.22156 0.96826 0.97518 0.81426 0.85628 1.86385 1.80524 1.36047 1.18727 1.20144 0.93107 0.88260 0.86925 1.21343 1.07094 1.02641 0.92242 1.21838 0.92915 0.93911 0.97581 1.22425 1.03149 0.96034 1.00719 1.23108 0.91945 1.00390 0.87048 1.67226 1.22504 1.04054 1.34113 1.20866 0.79067 0.85764 0.85412 1.90861 1.43375 1.23130 1.86217 1.48207 1.63772 1.17231 1.04152 1.22280 0.97445 0.80773 1.02419 1.21960 0.96804 1.03247 0.94858 1.21529 1.02116 0.93608 0.97931 1.22023 0.96568 0.99249 0.98937 1.21235 0.97936 0.90708 0.84517 0.89632 1.21928 1.01422 0.94382 0.95802 1.20994 0.97094 0.83911 0.95857 1.42662 1.84090 1.05019 1.07418 1.19729 1.37860 0.90108 0.90258 0.90145 1.25773 1.03564 0.99336 0.98920 1.69893 1.57944 1.15755 1.18998 0.84992 0.77777 0.77708 0.78377 1.21169 1.22017 1.18859 0.90058 0.87489 0.93266 0.84846 0.81291 0.80916 0.78968 0.89067 0.87911 0.91844 0.87234 0.90252 0.90419 0.93069 0.90498 0.92142 0.94389 0.95079 0.96386 0.80105 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.20 71.98 0.66 -2.45 16 2 C 0.08 2.07 2.04 29.85 0.06 2.13 16 3 H 0.13 2.69 5.97 -2.39 -0.01 2.67 16 4 O -0.31 -9.81 9.32 -71.09 -0.66 -10.48 16 5 C 0.29 7.51 7.45 84.80 0.63 8.14 16 6 C -0.21 -4.64 10.04 22.47 0.23 -4.42 16 7 C -0.04 -0.51 10.17 22.44 0.23 -0.28 16 8 C -0.20 -2.07 10.11 22.36 0.23 -1.85 16 9 C 0.13 1.66 11.18 84.63 0.95 2.60 16 10 N -0.55 -11.22 8.65 -308.96 -2.67 -13.89 16 11 C 0.50 16.29 6.88 87.66 0.60 16.89 16 12 O -0.56 -24.87 12.13 15.81 0.19 -24.68 16 13 N -0.60 -15.25 2.98 -794.34 -2.37 -17.62 16 14 C 0.09 1.30 5.59 86.37 0.48 1.79 16 15 C -0.13 -1.50 5.96 30.67 0.18 -1.32 16 16 C -0.11 -1.70 5.88 30.62 0.18 -1.52 16 17 C -0.13 -3.14 4.83 30.67 0.15 -2.99 16 18 C 0.16 4.65 3.03 44.92 0.14 4.79 16 19 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 20 C -0.10 -4.07 3.29 30.59 0.10 -3.97 16 21 C 0.15 6.86 6.03 86.38 0.52 7.38 16 22 N -0.75 -44.23 5.60 -343.46 -1.92 -46.15 16 23 C -0.25 -15.23 9.99 84.04 0.84 -14.39 16 24 H 0.08 4.64 7.83 -2.91 -0.02 4.61 16 25 C -0.08 -5.27 5.50 84.87 0.47 -4.80 16 26 N -0.98 -65.51 13.06 21.66 0.28 -65.22 16 27 Si 0.98 49.18 29.55 68.60 2.03 51.21 16 28 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 29 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 30 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.11 1.49 5.70 -2.39 -0.01 1.48 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.13 3.02 8.06 -2.91 -0.02 3.00 16 35 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 36 H 0.17 0.48 8.06 -2.91 -0.02 0.46 16 37 H 0.19 0.96 8.06 -2.91 -0.02 0.94 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.10 1.13 4.57 -2.39 -0.01 1.12 16 40 H 0.06 0.83 7.75 -2.39 -0.02 0.81 16 41 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.08 1.96 6.64 -2.39 -0.02 1.95 16 46 H 0.06 2.92 6.20 -2.39 -0.01 2.91 16 47 H 0.04 1.79 7.29 -2.39 -0.02 1.77 16 48 H 0.03 1.36 6.30 -2.39 -0.02 1.35 16 49 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.37 23.83 7.67 -92.71 -0.71 23.12 16 51 H 0.25 16.18 8.31 -92.71 -0.77 15.41 16 Total: -1.00 -88.03 399.53 1.74 -86.28 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: 0.23 Total: 34.82 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 6.64 Total: 5.73 kcal Atomic # 7 Polarization: -136.20 SS G_CDS: -6.68 Total: -142.89 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -0.47 Total: -35.15 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 2.03 Total: 51.21 kcal Total: -88.03 1.74 -86.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271600104.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.794 kcal (2) G-P(sol) polarization free energy of solvation -88.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds