Wall clock time and date at job start Wed Apr 1 2020 04:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47222 * 2 1 4 4 O 1.42898 * 109.47314 * 239.99515 * 2 1 3 5 5 C 1.35676 * 116.99625 * 89.99950 * 4 2 1 6 6 C 1.38926 * 119.68156 * 179.73009 * 5 4 2 7 7 C 1.38381 * 119.10686 * 179.71196 * 6 5 4 8 8 C 1.38828 * 118.48702 * 0.55187 * 7 6 5 9 9 C 1.38047 * 119.29124 * 359.73285 * 8 7 6 10 10 N 1.31968 * 120.83216 * 359.97153 * 9 8 7 11 11 C 1.50701 * 109.46692 * 119.99949 * 2 1 3 12 12 O 1.21286 * 119.99985 * 107.43595 * 11 2 1 13 13 N 1.34773 * 120.00091 * 287.43053 * 11 2 1 14 14 C 1.46932 * 120.62876 * 5.12080 * 13 11 2 15 15 C 1.53194 * 108.77379 * 233.62877 * 14 13 11 16 16 C 1.53041 * 109.31152 * 305.36667 * 15 14 13 17 17 C 1.53070 * 109.66102 * 61.30229 * 16 15 14 18 18 C 1.46928 * 120.63232 * 185.14172 * 13 11 2 19 19 H 1.08996 * 109.58783 * 246.30000 * 18 13 11 20 20 C 1.53001 * 109.58564 * 6.58277 * 18 13 11 21 21 C 1.52998 * 109.46987 * 178.90544 * 20 18 13 22 22 N 1.46499 * 109.46779 * 174.71811 * 21 20 18 23 23 C 1.36941 * 119.99858 * 179.97438 * 22 21 20 24 24 H 1.08006 * 119.99799 * 0.02562 * 23 22 21 25 25 C 1.38811 * 120.00109 * 179.97438 * 23 22 21 26 26 N 1.31610 * 120.00137 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 120.00003 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47033 * 270.00107 * 27 25 23 29 29 H 1.48503 * 109.46950 * 29.99789 * 27 25 23 30 30 H 1.48497 * 109.47371 * 150.00089 * 27 25 23 31 31 H 1.08996 * 109.46925 * 184.82805 * 1 2 3 32 32 H 1.08995 * 109.47124 * 304.83564 * 1 2 3 33 33 H 1.09001 * 109.46485 * 64.83307 * 1 2 3 34 34 H 1.07994 * 120.44465 * 0.02562 * 6 5 4 35 35 H 1.08001 * 120.75591 * 180.27956 * 7 6 5 36 36 H 1.08000 * 120.35547 * 179.70076 * 8 7 6 37 37 H 1.07999 * 119.58585 * 179.97438 * 9 8 7 38 38 H 1.08997 * 109.58707 * 353.41785 * 14 13 11 39 39 H 1.09004 * 109.58207 * 113.70133 * 14 13 11 40 40 H 1.08990 * 109.49598 * 65.31750 * 15 14 13 41 41 H 1.09004 * 109.49590 * 185.41742 * 15 14 13 42 42 H 1.09001 * 109.45895 * 181.39049 * 16 15 14 43 43 H 1.09007 * 109.46116 * 301.35714 * 16 15 14 44 44 H 1.09000 * 109.62414 * 178.83016 * 17 16 15 45 45 H 1.09002 * 109.39055 * 58.72236 * 17 16 15 46 46 H 1.09000 * 109.47132 * 58.90563 * 20 18 13 47 47 H 1.08994 * 109.46900 * 298.90855 * 20 18 13 48 48 H 1.08993 * 109.47147 * 54.71319 * 21 20 18 49 49 H 1.08997 * 109.46759 * 294.71491 * 21 20 18 50 50 H 0.96994 * 120.00244 * 359.97438 * 22 21 20 51 51 H 0.97008 * 120.00130 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2117 0.0828 -2.2741 6 6 2.6797 -0.5141 -3.4380 7 6 2.8792 0.2677 -4.5622 8 6 2.6132 1.6277 -4.4787 9 6 2.1559 2.1545 -3.2875 10 7 1.9696 1.3823 -2.2336 11 6 2.0323 -0.7104 1.2305 12 8 2.5311 -1.8117 1.1338 13 7 1.9272 -0.1220 2.4384 14 6 1.2261 1.1606 2.5879 15 6 2.1575 2.1526 3.2917 16 6 2.6423 1.5439 4.6095 17 6 3.4283 0.2613 4.3261 18 6 2.5120 -0.7505 3.6308 19 1 1.7166 -1.0518 4.3124 20 6 3.3251 -1.9787 3.2166 21 6 3.9551 -2.6152 4.4570 22 7 4.6282 -3.8602 4.0785 23 6 5.2685 -4.6089 5.0297 24 1 5.2770 -4.2817 6.0590 25 6 5.9058 -5.7888 4.6712 26 7 5.8951 -6.1877 3.4171 27 14 6.7788 -6.8104 5.9688 28 1 8.1929 -6.3704 6.0765 29 1 6.1029 -6.6291 7.2787 30 1 6.7343 -8.2437 5.5830 31 1 -0.3633 -1.0240 0.0865 32 1 -0.3633 0.5870 0.8435 33 1 -0.3632 0.4370 -0.9302 34 1 2.8803 -1.5749 -3.4665 35 1 3.2379 -0.1694 -5.4824 36 1 2.7630 2.2668 -5.3363 37 1 1.9479 3.2119 -3.2171 38 1 0.9569 1.5466 1.6047 39 1 0.3246 1.0169 3.1835 40 1 3.0140 2.3641 2.6518 41 1 1.6174 3.0773 3.4950 42 1 3.2857 2.2577 5.1241 43 1 1.7838 1.3095 5.2389 44 1 3.7910 -0.1604 5.2634 45 1 4.2744 0.4910 3.6784 46 1 4.1109 -1.6775 2.5239 47 1 2.6696 -2.7012 2.7305 48 1 3.1773 -2.8308 5.1896 49 1 4.6810 -1.9268 4.8897 50 1 4.6202 -4.1542 3.1543 51 1 5.4415 -5.6574 2.7432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271600109.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:07 Heat of formation + Delta-G solvation = -6.377358 kcal Electronic energy + Delta-G solvation = -31286.355901 eV Core-core repulsion = 27187.232578 eV Total energy + Delta-G solvation = -4099.123323 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.20288 -40.45645 -38.40098 -37.16855 -35.41272 -33.70351 -32.87220 -32.79064 -31.79687 -30.51385 -30.11827 -27.74136 -25.68535 -24.57694 -24.06280 -23.77023 -23.14549 -22.27488 -20.90569 -20.80895 -19.24799 -18.76962 -17.36430 -17.08413 -16.59667 -16.26585 -16.07522 -15.95121 -15.19302 -14.84398 -14.75181 -14.69133 -14.55219 -14.00823 -13.82510 -13.67112 -13.59336 -13.48783 -13.35053 -13.17570 -12.99045 -12.75518 -12.56789 -12.29371 -12.10789 -11.92805 -11.49163 -11.33125 -11.19254 -11.06148 -10.78374 -10.71499 -10.51549 -10.41319 -10.36411 -10.26175 -9.94186 -9.91712 -9.06734 -8.89559 -8.75463 -8.66566 -8.57341 -6.82952 -5.96294 -2.94159 0.84406 0.94698 2.28755 2.57192 3.17326 3.47044 3.58329 3.64628 3.78498 3.93565 4.19361 4.48812 4.53478 4.61937 4.66771 4.71211 4.73792 4.78088 4.79560 4.88320 4.90918 4.95187 5.12771 5.14980 5.26399 5.31491 5.40170 5.41296 5.50483 5.56780 5.62880 5.70947 5.73001 5.76855 5.78678 5.88290 5.91339 5.95092 6.06812 6.09837 6.19571 6.26594 6.34201 6.49438 6.62560 6.95489 7.02374 7.12402 7.34236 7.51450 7.94021 8.18804 8.91061 9.40988 10.27414 10.44236 11.52934 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010446 B = 0.002715 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.693892 B =10309.585412 C =12339.895382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.072 3.928 3 H 0.110 0.890 4 O -0.273 6.273 5 C 0.325 3.675 6 C -0.187 4.187 7 C -0.040 4.040 8 C -0.216 4.216 9 C 0.138 3.862 10 N -0.544 5.544 11 C 0.512 3.488 12 O -0.495 6.495 13 N -0.605 5.605 14 C 0.100 3.900 15 C -0.135 4.135 16 C -0.120 4.120 17 C -0.133 4.133 18 C 0.155 3.845 19 H 0.074 0.926 20 C -0.120 4.120 21 C 0.155 3.845 22 N -0.743 5.743 23 C -0.329 4.329 24 H 0.063 0.937 25 C -0.049 4.049 26 N -0.946 5.946 27 Si 1.084 2.916 28 H -0.296 1.296 29 H -0.296 1.296 30 H -0.288 1.288 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.136 0.864 37 H 0.159 0.841 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.093 0.907 48 H 0.013 0.987 49 H 0.016 0.984 50 H 0.369 0.631 51 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.618 24.909 -12.274 30.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.012 3.988 3 H 0.128 0.872 4 O -0.179 6.179 5 C 0.146 3.854 6 C -0.207 4.207 7 C -0.065 4.065 8 C -0.236 4.236 9 C -0.017 4.017 10 N -0.268 5.268 11 C 0.298 3.702 12 O -0.369 6.369 13 N -0.341 5.341 14 C -0.023 4.023 15 C -0.174 4.174 16 C -0.158 4.158 17 C -0.172 4.172 18 C 0.053 3.947 19 H 0.092 0.908 20 C -0.158 4.158 21 C 0.027 3.973 22 N -0.388 5.388 23 C -0.460 4.460 24 H 0.081 0.919 25 C -0.247 4.247 26 N -0.592 5.592 27 Si 0.915 3.085 28 H -0.224 1.224 29 H -0.223 1.223 30 H -0.214 1.214 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.163 0.837 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.176 0.824 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.112 0.888 48 H 0.031 0.969 49 H 0.033 0.967 50 H 0.202 0.798 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.730 23.031 -10.988 28.517 hybrid contribution -0.652 1.382 -1.176 1.928 sum -13.382 24.414 -12.163 30.382 Atomic orbital electron populations 1.22258 0.92546 1.03918 1.03703 1.22147 0.95745 0.97781 0.83141 0.87238 1.86424 1.79653 1.34260 1.17546 1.19927 0.91024 0.87348 0.87118 1.21164 1.05633 1.02572 0.91358 1.21446 0.93957 0.93430 0.97692 1.21978 1.05405 0.96223 1.00002 1.22398 0.92833 0.99121 0.87382 1.67248 1.22213 1.04736 1.32639 1.20177 0.79713 0.86476 0.83861 1.90876 1.42184 1.18700 1.85094 1.48050 1.56329 1.22523 1.07225 1.21940 0.95190 0.83490 1.01693 1.21927 0.99869 0.97992 0.97568 1.21541 1.00237 0.97274 0.96712 1.22073 0.98377 0.95029 1.01679 1.21325 0.95330 0.93080 0.84981 0.90837 1.22293 0.99800 0.95764 0.97922 1.20711 0.94014 0.88402 0.94199 1.42368 1.64843 1.23428 1.08197 1.20071 1.30276 1.04995 0.90700 0.91916 1.25774 1.00929 0.96790 1.01169 1.70799 1.46387 1.41175 1.00832 0.83185 0.75574 0.76222 0.73502 1.22424 1.22252 1.21421 0.91045 0.90134 0.90884 0.83742 0.84055 0.84572 0.82408 0.89572 0.90908 0.91435 0.90690 0.91611 0.91725 0.89806 0.91480 0.91658 0.88842 0.96883 0.96654 0.79826 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 9.17 37.16 0.34 -1.25 16 2 C 0.07 0.89 2.05 -27.88 -0.06 0.83 16 3 H 0.11 1.22 6.09 -51.93 -0.32 0.91 16 4 O -0.27 -3.98 9.33 -38.32 -0.36 -4.34 16 5 C 0.32 4.01 7.45 -17.12 -0.13 3.89 16 6 C -0.19 -1.96 10.04 -39.27 -0.39 -2.35 16 7 C -0.04 -0.31 10.17 -39.31 -0.40 -0.71 16 8 C -0.22 -1.46 10.11 -39.43 -0.40 -1.86 16 9 C 0.14 1.08 11.18 -17.56 -0.20 0.88 16 10 N -0.54 -5.82 8.65 -13.33 -0.12 -5.94 16 11 C 0.51 7.79 6.89 -10.99 -0.08 7.72 16 12 O -0.50 -9.92 12.09 -14.04 -0.17 -10.09 16 13 N -0.61 -7.71 2.97 -165.21 -0.49 -8.21 16 14 C 0.10 0.84 5.36 -3.71 -0.02 0.82 16 15 C -0.14 -1.06 6.09 -26.61 -0.16 -1.22 16 16 C -0.12 -1.10 5.88 -26.67 -0.16 -1.25 16 17 C -0.13 -1.68 4.84 -26.60 -0.13 -1.81 16 18 C 0.16 2.26 3.02 -67.60 -0.20 2.06 16 19 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 20 C -0.12 -2.35 3.29 -26.73 -0.09 -2.44 16 21 C 0.15 3.50 5.74 -4.04 -0.02 3.48 16 22 N -0.74 -21.05 5.60 -59.91 -0.34 -21.39 16 23 C -0.33 -10.09 9.99 -15.06 -0.15 -10.24 16 24 H 0.06 1.87 7.83 -52.48 -0.41 1.46 16 25 C -0.05 -1.53 5.50 -17.43 -0.10 -1.63 16 26 N -0.95 -31.44 13.70 55.49 0.76 -30.68 16 27 Si 1.08 27.52 29.92 -169.99 -5.09 22.43 16 28 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 30 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.58 5.91 -51.93 -0.31 0.27 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 37 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.09 0.60 4.56 -51.93 -0.24 0.36 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 44 H 0.08 1.11 6.88 -51.93 -0.36 0.75 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.06 1.40 7.28 -51.93 -0.38 1.03 16 47 H 0.09 2.07 6.19 -51.93 -0.32 1.74 16 48 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.02 0.35 6.86 -51.93 -0.36 -0.01 16 50 H 0.37 10.92 6.50 -40.82 -0.27 10.66 16 51 H 0.26 8.56 6.78 -40.82 -0.28 8.28 16 LS Contribution 398.86 15.07 6.01 6.01 Total: -1.00 -38.40 398.86 -10.06 -48.46 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -7.94 Total: 8.82 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -2.34 Total: -5.09 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: -0.18 Total: -66.21 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.53 Total: -14.42 kcal Atomic # 14 Polarization: 27.52 SS G_CDS: -5.09 Total: 22.43 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.40 -10.06 -48.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271600109.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.086 kcal (2) G-P(sol) polarization free energy of solvation -38.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds