Wall clock time and date at job start Wed Apr 1 2020 04:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47222 * 2 1 4 4 O 1.42898 * 109.47314 * 239.99515 * 2 1 3 5 5 C 1.35676 * 116.99625 * 89.99950 * 4 2 1 6 6 C 1.38926 * 119.68156 * 179.73009 * 5 4 2 7 7 C 1.38381 * 119.10686 * 179.71196 * 6 5 4 8 8 C 1.38828 * 118.48702 * 0.55187 * 7 6 5 9 9 C 1.38047 * 119.29124 * 359.73285 * 8 7 6 10 10 N 1.31968 * 120.83216 * 359.97153 * 9 8 7 11 11 C 1.50701 * 109.46692 * 119.99949 * 2 1 3 12 12 O 1.21286 * 119.99985 * 107.43595 * 11 2 1 13 13 N 1.34773 * 120.00091 * 287.43053 * 11 2 1 14 14 C 1.46932 * 120.62876 * 5.12080 * 13 11 2 15 15 C 1.53194 * 108.77379 * 233.62877 * 14 13 11 16 16 C 1.53041 * 109.31152 * 305.36667 * 15 14 13 17 17 C 1.53070 * 109.66102 * 61.30229 * 16 15 14 18 18 C 1.46928 * 120.63232 * 185.14172 * 13 11 2 19 19 H 1.08996 * 109.58783 * 246.30000 * 18 13 11 20 20 C 1.53001 * 109.58564 * 6.58277 * 18 13 11 21 21 C 1.52998 * 109.46987 * 178.90544 * 20 18 13 22 22 N 1.46499 * 109.46779 * 174.71811 * 21 20 18 23 23 C 1.36941 * 119.99858 * 179.97438 * 22 21 20 24 24 H 1.08006 * 119.99799 * 0.02562 * 23 22 21 25 25 C 1.38811 * 120.00109 * 179.97438 * 23 22 21 26 26 N 1.31610 * 120.00137 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 120.00003 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47033 * 270.00107 * 27 25 23 29 29 H 1.48503 * 109.46950 * 29.99789 * 27 25 23 30 30 H 1.48497 * 109.47371 * 150.00089 * 27 25 23 31 31 H 1.08996 * 109.46925 * 184.82805 * 1 2 3 32 32 H 1.08995 * 109.47124 * 304.83564 * 1 2 3 33 33 H 1.09001 * 109.46485 * 64.83307 * 1 2 3 34 34 H 1.07994 * 120.44465 * 0.02562 * 6 5 4 35 35 H 1.08001 * 120.75591 * 180.27956 * 7 6 5 36 36 H 1.08000 * 120.35547 * 179.70076 * 8 7 6 37 37 H 1.07999 * 119.58585 * 179.97438 * 9 8 7 38 38 H 1.08997 * 109.58707 * 353.41785 * 14 13 11 39 39 H 1.09004 * 109.58207 * 113.70133 * 14 13 11 40 40 H 1.08990 * 109.49598 * 65.31750 * 15 14 13 41 41 H 1.09004 * 109.49590 * 185.41742 * 15 14 13 42 42 H 1.09001 * 109.45895 * 181.39049 * 16 15 14 43 43 H 1.09007 * 109.46116 * 301.35714 * 16 15 14 44 44 H 1.09000 * 109.62414 * 178.83016 * 17 16 15 45 45 H 1.09002 * 109.39055 * 58.72236 * 17 16 15 46 46 H 1.09000 * 109.47132 * 58.90563 * 20 18 13 47 47 H 1.08994 * 109.46900 * 298.90855 * 20 18 13 48 48 H 1.08993 * 109.47147 * 54.71319 * 21 20 18 49 49 H 1.08997 * 109.46759 * 294.71491 * 21 20 18 50 50 H 0.96994 * 120.00244 * 359.97438 * 22 21 20 51 51 H 0.97008 * 120.00130 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2117 0.0828 -2.2741 6 6 2.6797 -0.5141 -3.4380 7 6 2.8792 0.2677 -4.5622 8 6 2.6132 1.6277 -4.4787 9 6 2.1559 2.1545 -3.2875 10 7 1.9696 1.3823 -2.2336 11 6 2.0323 -0.7104 1.2305 12 8 2.5311 -1.8117 1.1338 13 7 1.9272 -0.1220 2.4384 14 6 1.2261 1.1606 2.5879 15 6 2.1575 2.1526 3.2917 16 6 2.6423 1.5439 4.6095 17 6 3.4283 0.2613 4.3261 18 6 2.5120 -0.7505 3.6308 19 1 1.7166 -1.0518 4.3124 20 6 3.3251 -1.9787 3.2166 21 6 3.9551 -2.6152 4.4570 22 7 4.6282 -3.8602 4.0785 23 6 5.2685 -4.6089 5.0297 24 1 5.2770 -4.2817 6.0590 25 6 5.9058 -5.7888 4.6712 26 7 5.8951 -6.1877 3.4171 27 14 6.7788 -6.8104 5.9688 28 1 8.1929 -6.3704 6.0765 29 1 6.1029 -6.6291 7.2787 30 1 6.7343 -8.2437 5.5830 31 1 -0.3633 -1.0240 0.0865 32 1 -0.3633 0.5870 0.8435 33 1 -0.3632 0.4370 -0.9302 34 1 2.8803 -1.5749 -3.4665 35 1 3.2379 -0.1694 -5.4824 36 1 2.7630 2.2668 -5.3363 37 1 1.9479 3.2119 -3.2171 38 1 0.9569 1.5466 1.6047 39 1 0.3246 1.0169 3.1835 40 1 3.0140 2.3641 2.6518 41 1 1.6174 3.0773 3.4950 42 1 3.2857 2.2577 5.1241 43 1 1.7838 1.3095 5.2389 44 1 3.7910 -0.1604 5.2634 45 1 4.2744 0.4910 3.6784 46 1 4.1109 -1.6775 2.5239 47 1 2.6696 -2.7012 2.7305 48 1 3.1773 -2.8308 5.1896 49 1 4.6810 -1.9268 4.8897 50 1 4.6202 -4.1542 3.1543 51 1 5.4415 -5.6574 2.7432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271600109.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:06 Heat of formation + Delta-G solvation = -33.175219 kcal Electronic energy + Delta-G solvation = -31287.517943 eV Core-core repulsion = 27187.232578 eV Total energy + Delta-G solvation = -4100.285365 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.17203 -41.36154 -39.29731 -38.26121 -37.31370 -35.15487 -34.11248 -33.47343 -32.91759 -32.05879 -30.93342 -29.24777 -26.90613 -25.69510 -25.30944 -24.72321 -24.35788 -23.55330 -22.32441 -21.77972 -20.29300 -19.63862 -19.38309 -18.19731 -17.59544 -17.31766 -16.96318 -16.79543 -16.50246 -16.26672 -15.89199 -15.77444 -15.55657 -15.44946 -15.30205 -14.99754 -14.75667 -14.44424 -14.38807 -14.15305 -14.04853 -13.91095 -13.50851 -13.28008 -12.99627 -12.88582 -12.80689 -12.68734 -12.52873 -12.41350 -12.22690 -12.02166 -11.91962 -11.87336 -11.65313 -11.53225 -11.26037 -10.97223 -10.93946 -10.64653 -10.13390 -9.69451 -9.52302 -9.17638 -8.47027 -5.40280 0.16736 0.28175 1.29575 1.46555 1.53735 1.67109 1.81292 2.25937 2.68797 2.78970 3.19464 3.24742 3.34926 3.60450 3.72954 3.80385 3.81313 3.88530 3.97137 4.01476 4.03795 4.08784 4.14891 4.19020 4.27593 4.32919 4.35814 4.44860 4.55603 4.57613 4.60292 4.65975 4.69019 4.77200 4.83103 4.89469 4.99877 5.03985 5.05012 5.08957 5.18629 5.25815 5.26505 5.29424 5.43100 5.49700 5.51619 5.57807 6.12370 6.29925 6.40008 6.80538 7.02486 7.04620 7.92207 8.07862 9.04587 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010446 B = 0.002715 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.693892 B =10309.585412 C =12339.895382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.080 3.920 3 H 0.123 0.877 4 O -0.310 6.310 5 C 0.293 3.707 6 C -0.213 4.213 7 C -0.037 4.037 8 C -0.203 4.203 9 C 0.130 3.870 10 N -0.554 5.554 11 C 0.501 3.499 12 O -0.560 6.560 13 N -0.599 5.599 14 C 0.091 3.909 15 C -0.131 4.131 16 C -0.114 4.114 17 C -0.130 4.130 18 C 0.159 3.841 19 H 0.087 0.913 20 C -0.097 4.097 21 C 0.155 3.845 22 N -0.762 5.762 23 C -0.338 4.338 24 H 0.072 0.928 25 C -0.112 4.112 26 N -0.975 5.975 27 Si 1.138 2.862 28 H -0.281 1.281 29 H -0.268 1.268 30 H -0.291 1.291 31 H 0.053 0.947 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.133 0.867 35 H 0.170 0.830 36 H 0.174 0.826 37 H 0.194 0.806 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.111 0.889 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.047 0.953 46 H 0.035 0.965 47 H 0.063 0.937 48 H 0.021 0.979 49 H 0.024 0.976 50 H 0.355 0.645 51 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.858 28.661 -11.739 34.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.020 3.980 3 H 0.141 0.859 4 O -0.217 6.217 5 C 0.115 3.885 6 C -0.233 4.233 7 C -0.063 4.063 8 C -0.223 4.223 9 C -0.025 4.025 10 N -0.279 5.279 11 C 0.289 3.711 12 O -0.438 6.438 13 N -0.333 5.333 14 C -0.030 4.030 15 C -0.169 4.169 16 C -0.152 4.152 17 C -0.168 4.168 18 C 0.056 3.944 19 H 0.105 0.895 20 C -0.135 4.135 21 C 0.029 3.971 22 N -0.406 5.406 23 C -0.469 4.469 24 H 0.089 0.911 25 C -0.302 4.302 26 N -0.623 5.623 27 Si 0.961 3.039 28 H -0.208 1.208 29 H -0.193 1.193 30 H -0.217 1.217 31 H 0.072 0.928 32 H 0.128 0.872 33 H 0.099 0.901 34 H 0.151 0.849 35 H 0.187 0.813 36 H 0.191 0.809 37 H 0.210 0.790 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.074 0.926 41 H 0.129 0.871 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.066 0.934 46 H 0.054 0.946 47 H 0.081 0.919 48 H 0.039 0.961 49 H 0.042 0.958 50 H 0.186 0.814 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -14.018 26.891 -10.429 32.068 hybrid contribution -0.280 0.349 -1.446 1.514 sum -14.299 27.240 -11.875 32.977 Atomic orbital electron populations 1.22234 0.90352 1.03461 1.05373 1.22165 0.97185 0.97286 0.81348 0.85933 1.86372 1.80600 1.36049 1.18709 1.20140 0.93151 0.88278 0.86921 1.21345 1.06981 1.02713 0.92306 1.21842 0.92922 0.93935 0.97558 1.22432 1.03084 0.96008 1.00759 1.23114 0.91950 1.00402 0.87042 1.67229 1.22601 1.04001 1.34027 1.20899 0.78822 0.85977 0.85402 1.90852 1.45248 1.21574 1.86108 1.48150 1.55631 1.23714 1.05801 1.22369 0.95790 0.81266 1.03551 1.21939 0.99660 0.98943 0.96322 1.21536 1.00450 0.95270 0.97921 1.22022 0.97873 0.96494 1.00405 1.21177 0.95483 0.91757 0.85980 0.89509 1.21958 0.98761 0.97395 0.95409 1.20890 0.93972 0.86604 0.95669 1.42696 1.65412 1.25146 1.07345 1.20501 1.29730 1.05268 0.91403 0.91053 1.27540 1.01812 0.98574 1.02263 1.70944 1.47956 1.41620 1.01776 0.82528 0.75273 0.74173 0.71896 1.20777 1.19307 1.21707 0.92801 0.87166 0.90069 0.84861 0.81272 0.80876 0.78952 0.87727 0.88343 0.92560 0.87090 0.90266 0.90172 0.90579 0.93364 0.94637 0.91868 0.96103 0.95791 0.81385 0.95052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.17 71.98 0.66 -2.26 16 2 C 0.08 2.03 2.05 29.85 0.06 2.10 16 3 H 0.12 2.70 6.09 -2.39 -0.01 2.68 16 4 O -0.31 -9.83 9.33 -71.20 -0.66 -10.49 16 5 C 0.29 7.59 7.45 84.80 0.63 8.22 16 6 C -0.21 -4.74 10.04 22.47 0.23 -4.51 16 7 C -0.04 -0.53 10.17 22.45 0.23 -0.30 16 8 C -0.20 -2.16 10.11 22.37 0.23 -1.93 16 9 C 0.13 1.71 11.18 84.63 0.95 2.66 16 10 N -0.55 -11.42 8.65 -308.94 -2.67 -14.09 16 11 C 0.50 16.20 6.89 87.66 0.60 16.80 16 12 O -0.56 -24.81 12.09 15.68 0.19 -24.62 16 13 N -0.60 -15.20 2.97 -795.00 -2.36 -17.56 16 14 C 0.09 1.27 5.36 86.36 0.46 1.73 16 15 C -0.13 -1.58 6.09 30.67 0.19 -1.40 16 16 C -0.11 -1.74 5.88 30.63 0.18 -1.56 16 17 C -0.13 -3.20 4.84 30.68 0.15 -3.05 16 18 C 0.16 4.70 3.02 44.97 0.14 4.83 16 19 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 20 C -0.10 -4.09 3.29 30.59 0.10 -3.99 16 21 C 0.16 7.33 5.74 86.38 0.50 7.82 16 22 N -0.76 -45.33 5.60 -343.46 -1.92 -47.26 16 23 C -0.34 -21.16 9.99 84.03 0.84 -20.32 16 24 H 0.07 4.26 7.83 -2.91 -0.02 4.24 16 25 C -0.11 -7.10 5.50 84.86 0.47 -6.63 16 26 N -0.97 -67.24 13.70 21.65 0.30 -66.95 16 27 Si 1.14 55.61 29.92 68.60 2.05 57.66 16 28 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 29 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 30 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 32 H 0.11 1.31 5.91 -2.39 -0.01 1.30 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 35 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.17 0.56 8.06 -2.91 -0.02 0.53 16 37 H 0.19 1.05 8.06 -2.91 -0.02 1.02 16 38 H 0.10 1.11 4.56 -2.39 -0.01 1.10 16 39 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.08 1.98 6.88 -2.39 -0.02 1.96 16 45 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.03 1.67 7.28 -2.39 -0.02 1.65 16 47 H 0.06 3.07 6.19 -2.39 -0.01 3.05 16 48 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.02 1.10 6.86 -2.39 -0.02 1.09 16 50 H 0.36 22.64 6.50 -92.71 -0.60 22.04 16 51 H 0.24 16.90 6.78 -92.70 -0.63 16.27 16 Total: -1.00 -91.10 398.86 1.99 -89.12 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: 0.47 Total: 36.00 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 6.60 Total: -1.81 kcal Atomic # 7 Polarization: -139.19 SS G_CDS: -6.66 Total: -145.86 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -0.47 Total: -35.11 kcal Atomic # 14 Polarization: 55.61 SS G_CDS: 2.05 Total: 57.66 kcal Total: -91.10 1.99 -89.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271600109.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.940 kcal (2) G-P(sol) polarization free energy of solvation -91.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds