Wall clock time and date at job start Wed Apr 1 2020 05:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.46968 * 2 1 4 4 O 1.42894 * 109.47020 * 239.99611 * 2 1 3 5 5 C 1.35912 * 117.00002 * 85.42113 * 4 2 1 6 6 C 1.39134 * 120.47441 * 354.23450 * 5 4 2 7 7 C 1.38536 * 118.37507 * 179.71430 * 6 5 4 8 8 C 1.38255 * 119.21954 * 0.58124 * 7 6 5 9 9 N 1.31841 * 120.88946 * 359.68192 * 8 7 6 10 10 C 1.31848 * 121.77632 * 0.02562 * 9 8 7 11 11 C 1.50702 * 109.46996 * 119.99881 * 2 1 3 12 12 O 1.21277 * 120.00423 * 115.00348 * 11 2 1 13 13 N 1.34779 * 120.00118 * 294.99537 * 11 2 1 14 14 C 1.46495 * 120.00327 * 180.02562 * 13 11 2 15 15 H 1.08996 * 109.47240 * 325.00458 * 14 13 11 16 16 C 1.52998 * 109.46872 * 85.00185 * 14 13 11 17 17 C 1.53003 * 109.47221 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47041 * 300.00437 * 17 16 14 19 19 H 1.08998 * 109.46716 * 299.99316 * 18 17 16 20 20 C 1.53005 * 109.47064 * 179.97438 * 18 17 16 21 21 N 1.46509 * 109.46808 * 64.99897 * 20 18 17 22 22 C 1.36935 * 119.99858 * 180.02562 * 21 20 18 23 23 H 1.08002 * 119.99816 * 359.97438 * 22 21 20 24 24 C 1.38809 * 120.00054 * 180.02562 * 22 21 20 25 25 N 1.31622 * 119.99869 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99950 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47224 * 359.97438 * 26 24 22 28 28 H 1.48506 * 109.47288 * 119.99796 * 26 24 22 29 29 H 1.48502 * 109.47081 * 239.99269 * 26 24 22 30 30 C 1.52998 * 109.47470 * 59.99715 * 18 17 16 31 31 C 1.52997 * 109.47379 * 205.00203 * 14 13 11 32 32 H 1.09005 * 109.47232 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47093 * 300.00081 * 1 2 3 34 34 H 1.09000 * 109.47354 * 60.00339 * 1 2 3 35 35 H 1.08004 * 120.81274 * 359.97438 * 6 5 4 36 36 H 1.08006 * 120.38750 * 180.30531 * 7 6 5 37 37 H 1.08002 * 119.55468 * 179.70142 * 8 7 6 38 38 H 1.08000 * 119.65370 * 180.02562 * 10 9 8 39 39 H 0.97005 * 119.99448 * 0.02562 * 13 11 2 40 40 H 1.09002 * 109.47622 * 300.00124 * 16 14 13 41 41 H 1.08999 * 109.47492 * 60.00623 * 16 14 13 42 42 H 1.08996 * 109.47314 * 179.97438 * 17 16 14 43 43 H 1.09007 * 109.46930 * 59.99765 * 17 16 14 44 44 H 1.08995 * 109.47196 * 184.99482 * 20 18 17 45 45 H 1.08992 * 109.47147 * 304.99963 * 20 18 17 46 46 H 0.96999 * 119.99897 * 0.02562 * 21 20 18 47 47 H 0.97003 * 120.00140 * 180.02562 * 25 24 22 48 48 H 1.08998 * 109.47150 * 179.97438 * 30 18 17 49 49 H 1.08999 * 109.47492 * 59.99516 * 30 18 17 50 50 H 1.09005 * 109.47136 * 300.00461 * 31 14 13 51 51 H 1.09005 * 109.47210 * 59.99976 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.1208 0.0646 -2.3020 6 6 1.6720 1.3812 -2.3358 7 6 1.8156 2.0957 -3.5140 8 6 2.3845 1.4784 -4.6125 9 7 2.7947 0.2271 -4.5489 10 6 2.6814 -0.4854 -3.4453 11 6 2.0323 -0.7104 1.2305 12 8 2.6530 -1.7466 1.1217 13 7 1.7919 -0.1941 2.4521 14 6 2.2807 -0.8843 3.6482 15 1 2.2340 -1.9618 3.4905 16 6 3.7285 -0.4710 3.9197 17 6 4.2389 -1.1913 5.1693 18 6 3.3669 -0.8126 6.3681 19 1 3.4138 0.2650 6.5254 20 6 3.8769 -1.5334 7.6177 21 7 5.2199 -1.0493 7.9468 22 6 5.8827 -1.5546 9.0333 23 1 5.4152 -2.3097 9.6479 24 6 7.1549 -1.0955 9.3455 25 7 7.7245 -0.1749 8.5968 26 14 8.0587 -1.7843 10.8281 27 1 7.2074 -2.7990 11.4993 28 1 9.3272 -2.4167 10.3848 29 1 8.3601 -0.6842 11.7791 30 6 1.9191 -1.2259 6.0967 31 6 1.4090 -0.5061 4.8473 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 -0.3634 0.5138 -0.8900 35 1 1.2263 1.8363 -1.4636 36 1 1.4829 3.1214 -3.5749 37 1 2.4947 2.0289 -5.5352 38 1 3.0294 -1.5077 -3.4312 39 1 1.2953 0.6346 2.5391 40 1 4.3497 -0.7404 3.0654 41 1 3.7753 0.6065 4.0774 42 1 5.2705 -0.8972 5.3624 43 1 4.1920 -2.2690 5.0121 44 1 3.2044 -1.3342 8.4520 45 1 3.9136 -2.6062 7.4287 46 1 5.6396 -0.3708 7.3950 47 1 8.6137 0.1457 8.8147 48 1 1.2981 -0.9565 6.9510 49 1 1.8722 -2.3035 5.9394 50 1 1.4557 0.5715 5.0050 51 1 0.3774 -0.8006 4.6539 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272762917.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:12 Heat of formation + Delta-G solvation = -42.416510 kcal Electronic energy + Delta-G solvation = -29829.085637 eV Core-core repulsion = 25728.399539 eV Total energy + Delta-G solvation = -4100.686098 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.32884 -40.26526 -38.88677 -37.94307 -35.28371 -33.88578 -32.81740 -32.58649 -31.22875 -30.67925 -30.43409 -28.96407 -25.72388 -24.89604 -24.12667 -23.37690 -22.88332 -22.29190 -20.77389 -20.65737 -19.59923 -18.94504 -17.98310 -17.20257 -17.08164 -16.57317 -16.34631 -16.13353 -15.27630 -14.96159 -14.71779 -14.60227 -14.41590 -14.21912 -14.14753 -13.84864 -13.69951 -13.49371 -13.23909 -13.12759 -12.86459 -12.69992 -12.40180 -12.23970 -12.09076 -12.03372 -11.91449 -11.72292 -11.05091 -11.02468 -10.92893 -10.78155 -10.37251 -10.29288 -10.19871 -10.09260 -10.03740 -10.00781 -9.77677 -9.60656 -9.20163 -8.88725 -8.84471 -6.87875 -5.74249 -3.02064 0.67352 0.76477 2.11345 2.25055 3.11487 3.34774 3.44754 3.50381 3.52653 3.97177 4.09950 4.17363 4.24857 4.28119 4.35630 4.60476 4.61814 4.64137 4.73396 4.78861 4.92784 4.98348 5.02571 5.26988 5.27209 5.30759 5.42681 5.49085 5.52061 5.55088 5.57424 5.60777 5.61830 5.66208 5.90053 5.92607 5.98996 6.06071 6.21536 6.24763 6.25786 6.34790 6.44584 6.56893 6.69622 6.74830 6.87346 6.98026 7.16207 7.52464 7.73062 7.88518 8.45242 9.56291 10.15530 10.49974 11.48890 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019318 B = 0.001696 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.114525 B =16503.250438 C =17365.479366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.064 3.936 3 H 0.098 0.902 4 O -0.276 6.276 5 C 0.083 3.917 6 C -0.170 4.170 7 C -0.130 4.130 8 C 0.056 3.944 9 N -0.446 5.446 10 C 0.078 3.922 11 C 0.517 3.483 12 O -0.510 6.510 13 N -0.720 5.720 14 C 0.146 3.854 15 H 0.090 0.910 16 C -0.127 4.127 17 C -0.107 4.107 18 C -0.095 4.095 19 H 0.070 0.930 20 C 0.157 3.843 21 N -0.732 5.732 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.016 4.016 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 C -0.107 4.107 31 C -0.122 4.122 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.159 0.841 38 H 0.166 0.834 39 H 0.398 0.602 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.017 0.983 45 H 0.018 0.982 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.068 0.932 49 H 0.065 0.935 50 H 0.067 0.933 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.289 6.797 -23.440 31.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.004 3.996 3 H 0.116 0.884 4 O -0.187 6.187 5 C 0.035 3.965 6 C -0.197 4.197 7 C -0.150 4.150 8 C -0.101 4.101 9 N -0.155 5.155 10 C -0.081 4.081 11 C 0.300 3.700 12 O -0.383 6.383 13 N -0.373 5.373 14 C 0.043 3.957 15 H 0.108 0.892 16 C -0.166 4.166 17 C -0.145 4.145 18 C -0.114 4.114 19 H 0.088 0.912 20 C 0.029 3.971 21 N -0.376 5.376 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.212 4.212 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.146 4.146 31 C -0.160 4.160 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.176 0.824 38 H 0.183 0.817 39 H 0.232 0.768 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.035 0.965 45 H 0.036 0.964 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.086 0.914 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.386 5.320 -24.068 31.359 hybrid contribution 0.023 1.060 1.527 1.859 sum -19.363 6.380 -22.541 30.392 Atomic orbital electron populations 1.22336 0.92338 1.04764 1.03879 1.22280 0.95906 0.97091 0.84322 0.88417 1.86260 1.80740 1.36205 1.15519 1.20259 0.96688 0.91234 0.88327 1.21783 1.03626 0.94024 1.00249 1.22019 0.98843 1.01127 0.93021 1.22716 0.97220 0.91277 0.98883 1.67772 1.14763 1.07467 1.25517 1.22308 0.98514 1.01074 0.86163 1.19951 0.80300 0.85682 0.84035 1.90784 1.38655 1.22782 1.86127 1.46017 1.57979 1.27868 1.05437 1.21151 0.94048 0.97910 0.82578 0.89216 1.21936 0.94867 1.00722 0.99071 1.21493 1.00465 1.00072 0.92468 1.21356 0.93504 1.00724 0.95788 0.91182 1.20685 0.87841 0.95717 0.92854 1.42390 1.13752 1.48528 1.32955 1.19294 0.97298 1.17041 1.03179 0.91193 1.24734 0.97555 0.99489 0.99390 1.69669 1.15778 1.32657 1.40234 0.86123 0.79723 0.78046 0.82354 1.20584 1.21903 1.21938 1.21463 0.96571 1.00322 0.96237 1.21779 0.98511 1.01267 0.94424 0.90341 0.89987 0.90702 0.84127 0.84353 0.82410 0.81680 0.76784 0.91810 0.91908 0.90369 0.92049 0.96503 0.96379 0.78263 0.93629 0.91379 0.91675 0.91403 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.86 9.15 37.16 0.34 -0.52 16 2 C 0.06 0.49 2.64 -27.88 -0.07 0.42 16 3 H 0.10 0.52 6.34 -51.93 -0.33 0.19 16 4 O -0.28 -2.88 9.35 -39.32 -0.37 -3.24 16 5 C 0.08 0.75 6.62 -39.08 -0.26 0.49 16 6 C -0.17 -1.12 8.36 -39.14 -0.33 -1.45 16 7 C -0.13 -0.75 10.11 -39.47 -0.40 -1.15 16 8 C 0.06 0.40 11.18 -17.54 -0.20 0.20 16 9 N -0.45 -4.34 10.36 -13.13 -0.14 -4.48 16 10 C 0.08 0.75 11.14 -17.37 -0.19 0.56 16 11 C 0.52 5.55 7.14 -10.98 -0.08 5.47 16 12 O -0.51 -8.05 16.17 -14.30 -0.23 -8.28 16 13 N -0.72 -6.08 5.04 -53.81 -0.27 -6.35 16 14 C 0.15 1.58 2.46 -67.94 -0.17 1.41 16 15 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 16 C -0.13 -1.66 5.49 -26.73 -0.15 -1.81 16 17 C -0.11 -1.67 5.08 -26.73 -0.14 -1.81 16 18 C -0.09 -1.46 2.23 -90.62 -0.20 -1.66 16 19 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 20 C 0.16 3.13 5.65 -4.03 -0.02 3.10 16 21 N -0.73 -18.57 5.33 -59.91 -0.32 -18.89 16 22 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 23 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 24 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 25 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 26 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 30 C -0.11 -1.26 5.20 -26.76 -0.14 -1.40 16 31 C -0.12 -1.12 5.39 -26.76 -0.14 -1.26 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.22 7.92 -51.93 -0.41 -0.19 16 34 H 0.07 0.30 6.97 -51.93 -0.36 -0.06 16 35 H 0.14 0.57 5.60 -52.48 -0.29 0.28 16 36 H 0.14 0.39 8.06 -52.48 -0.42 -0.03 16 37 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.40 1.99 8.39 -40.82 -0.34 1.65 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.45 7.18 -51.93 -0.37 1.08 16 43 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.38 10.17 6.85 -40.82 -0.28 9.89 16 47 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 410.19 15.07 6.18 6.18 Total: -1.00 -35.72 410.19 -10.08 -45.80 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -8.25 Total: 6.21 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -2.39 Total: -6.82 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.00 Total: -57.49 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -0.60 Total: -11.52 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.72 -10.08 -45.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272762917.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.385 kcal (2) G-P(sol) polarization free energy of solvation -35.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds