Wall clock time and date at job start Wed Apr 1 2020 05:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.46968 * 2 1 4 4 O 1.42894 * 109.47020 * 239.99611 * 2 1 3 5 5 C 1.35912 * 117.00002 * 85.42113 * 4 2 1 6 6 C 1.39134 * 120.47441 * 354.23450 * 5 4 2 7 7 C 1.38536 * 118.37507 * 179.71430 * 6 5 4 8 8 C 1.38255 * 119.21954 * 0.58124 * 7 6 5 9 9 N 1.31841 * 120.88946 * 359.68192 * 8 7 6 10 10 C 1.31848 * 121.77632 * 0.02562 * 9 8 7 11 11 C 1.50702 * 109.46996 * 119.99881 * 2 1 3 12 12 O 1.21277 * 120.00423 * 115.00348 * 11 2 1 13 13 N 1.34779 * 120.00118 * 294.99537 * 11 2 1 14 14 C 1.46495 * 120.00327 * 180.02562 * 13 11 2 15 15 H 1.08996 * 109.47240 * 325.00458 * 14 13 11 16 16 C 1.52998 * 109.46872 * 85.00185 * 14 13 11 17 17 C 1.53003 * 109.47221 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47041 * 300.00437 * 17 16 14 19 19 H 1.08998 * 109.46716 * 299.99316 * 18 17 16 20 20 C 1.53005 * 109.47064 * 179.97438 * 18 17 16 21 21 N 1.46509 * 109.46808 * 64.99897 * 20 18 17 22 22 C 1.36935 * 119.99858 * 180.02562 * 21 20 18 23 23 H 1.08002 * 119.99816 * 359.97438 * 22 21 20 24 24 C 1.38809 * 120.00054 * 180.02562 * 22 21 20 25 25 N 1.31622 * 119.99869 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99950 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47224 * 359.97438 * 26 24 22 28 28 H 1.48506 * 109.47288 * 119.99796 * 26 24 22 29 29 H 1.48502 * 109.47081 * 239.99269 * 26 24 22 30 30 C 1.52998 * 109.47470 * 59.99715 * 18 17 16 31 31 C 1.52997 * 109.47379 * 205.00203 * 14 13 11 32 32 H 1.09005 * 109.47232 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47093 * 300.00081 * 1 2 3 34 34 H 1.09000 * 109.47354 * 60.00339 * 1 2 3 35 35 H 1.08004 * 120.81274 * 359.97438 * 6 5 4 36 36 H 1.08006 * 120.38750 * 180.30531 * 7 6 5 37 37 H 1.08002 * 119.55468 * 179.70142 * 8 7 6 38 38 H 1.08000 * 119.65370 * 180.02562 * 10 9 8 39 39 H 0.97005 * 119.99448 * 0.02562 * 13 11 2 40 40 H 1.09002 * 109.47622 * 300.00124 * 16 14 13 41 41 H 1.08999 * 109.47492 * 60.00623 * 16 14 13 42 42 H 1.08996 * 109.47314 * 179.97438 * 17 16 14 43 43 H 1.09007 * 109.46930 * 59.99765 * 17 16 14 44 44 H 1.08995 * 109.47196 * 184.99482 * 20 18 17 45 45 H 1.08992 * 109.47147 * 304.99963 * 20 18 17 46 46 H 0.96999 * 119.99897 * 0.02562 * 21 20 18 47 47 H 0.97003 * 120.00140 * 180.02562 * 25 24 22 48 48 H 1.08998 * 109.47150 * 179.97438 * 30 18 17 49 49 H 1.08999 * 109.47492 * 59.99516 * 30 18 17 50 50 H 1.09005 * 109.47136 * 300.00461 * 31 14 13 51 51 H 1.09005 * 109.47210 * 59.99976 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.1208 0.0646 -2.3020 6 6 1.6720 1.3812 -2.3358 7 6 1.8156 2.0957 -3.5140 8 6 2.3845 1.4784 -4.6125 9 7 2.7947 0.2271 -4.5489 10 6 2.6814 -0.4854 -3.4453 11 6 2.0323 -0.7104 1.2305 12 8 2.6530 -1.7466 1.1217 13 7 1.7919 -0.1941 2.4521 14 6 2.2807 -0.8843 3.6482 15 1 2.2340 -1.9618 3.4905 16 6 3.7285 -0.4710 3.9197 17 6 4.2389 -1.1913 5.1693 18 6 3.3669 -0.8126 6.3681 19 1 3.4138 0.2650 6.5254 20 6 3.8769 -1.5334 7.6177 21 7 5.2199 -1.0493 7.9468 22 6 5.8827 -1.5546 9.0333 23 1 5.4152 -2.3097 9.6479 24 6 7.1549 -1.0955 9.3455 25 7 7.7245 -0.1749 8.5968 26 14 8.0587 -1.7843 10.8281 27 1 7.2074 -2.7990 11.4993 28 1 9.3272 -2.4167 10.3848 29 1 8.3601 -0.6842 11.7791 30 6 1.9191 -1.2259 6.0967 31 6 1.4090 -0.5061 4.8473 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 -0.3634 0.5138 -0.8900 35 1 1.2263 1.8363 -1.4636 36 1 1.4829 3.1214 -3.5749 37 1 2.4947 2.0289 -5.5352 38 1 3.0294 -1.5077 -3.4312 39 1 1.2953 0.6346 2.5391 40 1 4.3497 -0.7404 3.0654 41 1 3.7753 0.6065 4.0774 42 1 5.2705 -0.8972 5.3624 43 1 4.1920 -2.2690 5.0121 44 1 3.2044 -1.3342 8.4520 45 1 3.9136 -2.6062 7.4287 46 1 5.6396 -0.3708 7.3950 47 1 8.6137 0.1457 8.8147 48 1 1.2981 -0.9565 6.9510 49 1 1.8722 -2.3035 5.9394 50 1 1.4557 0.5715 5.0050 51 1 0.3774 -0.8006 4.6539 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272762917.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:11 Heat of formation + Delta-G solvation = -66.499399 kcal Electronic energy + Delta-G solvation = -29830.129949 eV Core-core repulsion = 25728.399539 eV Total energy + Delta-G solvation = -4101.730410 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.96322 -41.06162 -39.76529 -38.84236 -36.72779 -35.27120 -33.68744 -33.19822 -32.71909 -31.72843 -31.09438 -30.30766 -26.96873 -25.85365 -24.87627 -24.48247 -23.92594 -23.41299 -21.96516 -21.50581 -20.74307 -19.51336 -19.18027 -18.66132 -17.76509 -17.30595 -17.12940 -16.80194 -16.68065 -16.19398 -15.72134 -15.48767 -15.37663 -15.30000 -15.21892 -14.91256 -14.74756 -14.59490 -14.37126 -13.97181 -13.79524 -13.50796 -13.32704 -13.24154 -13.12270 -13.09454 -12.88733 -12.80483 -12.63905 -12.30121 -12.12596 -12.06460 -12.02744 -11.90894 -11.47296 -11.27472 -11.17557 -10.94559 -10.87667 -10.70302 -10.58323 -10.11898 -9.48364 -8.98462 -7.96074 -5.24037 0.13403 0.22876 1.43650 1.45743 1.46820 1.47337 1.56940 2.45029 2.55288 2.78911 3.37477 3.41223 3.56498 3.61581 3.71386 3.74172 3.75760 3.82530 3.90384 3.94253 4.07820 4.13964 4.16277 4.31870 4.43099 4.45124 4.52805 4.57056 4.59042 4.60898 4.64172 4.76895 4.81910 4.94708 5.00889 5.06839 5.07679 5.08241 5.13300 5.13814 5.20989 5.24823 5.31159 5.41562 5.46563 5.47373 5.53835 5.62064 6.13067 6.27095 6.48697 6.96206 7.15543 7.33030 8.11125 8.33817 9.27837 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019318 B = 0.001696 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.114525 B =16503.250438 C =17365.479366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.065 3.935 3 H 0.128 0.872 4 O -0.308 6.308 5 C 0.068 3.932 6 C -0.165 4.165 7 C -0.120 4.120 8 C 0.046 3.954 9 N -0.476 5.476 10 C 0.048 3.952 11 C 0.512 3.488 12 O -0.571 6.571 13 N -0.700 5.700 14 C 0.153 3.847 15 H 0.066 0.934 16 C -0.118 4.118 17 C -0.102 4.102 18 C -0.083 4.083 19 H 0.069 0.931 20 C 0.152 3.848 21 N -0.744 5.744 22 C -0.245 4.245 23 H 0.074 0.926 24 C -0.078 4.078 25 N -0.970 5.970 26 Si 0.974 3.026 27 H -0.266 1.266 28 H -0.295 1.295 29 H -0.291 1.291 30 C -0.103 4.103 31 C -0.110 4.110 32 H 0.059 0.941 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.172 0.828 36 H 0.177 0.823 37 H 0.183 0.817 38 H 0.155 0.845 39 H 0.421 0.579 40 H 0.041 0.959 41 H 0.075 0.925 42 H 0.039 0.961 43 H 0.048 0.952 44 H 0.024 0.976 45 H 0.012 0.988 46 H 0.374 0.626 47 H 0.251 0.749 48 H 0.084 0.916 49 H 0.062 0.938 50 H 0.088 0.912 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.369 9.215 -23.287 34.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.006 3.994 3 H 0.145 0.855 4 O -0.220 6.220 5 C 0.021 3.979 6 C -0.191 4.191 7 C -0.140 4.140 8 C -0.112 4.112 9 N -0.185 5.185 10 C -0.109 4.109 11 C 0.298 3.702 12 O -0.449 6.449 13 N -0.354 5.354 14 C 0.048 3.952 15 H 0.085 0.915 16 C -0.157 4.157 17 C -0.140 4.140 18 C -0.102 4.102 19 H 0.088 0.912 20 C 0.026 3.974 21 N -0.387 5.387 22 C -0.377 4.377 23 H 0.092 0.908 24 C -0.270 4.270 25 N -0.621 5.621 26 Si 0.803 3.197 27 H -0.190 1.190 28 H -0.222 1.222 29 H -0.218 1.218 30 C -0.141 4.141 31 C -0.147 4.147 32 H 0.079 0.921 33 H 0.131 0.869 34 H 0.108 0.892 35 H 0.189 0.811 36 H 0.194 0.806 37 H 0.200 0.800 38 H 0.172 0.828 39 H 0.259 0.741 40 H 0.059 0.941 41 H 0.094 0.906 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.041 0.959 45 H 0.030 0.970 46 H 0.206 0.794 47 H 0.059 0.941 48 H 0.102 0.898 49 H 0.081 0.919 50 H 0.106 0.894 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.536 7.749 -23.902 33.752 hybrid contribution 0.971 0.316 1.434 1.760 sum -21.565 8.065 -22.468 32.170 Atomic orbital electron populations 1.22361 0.89840 1.04348 1.06120 1.22468 0.97590 0.97409 0.81964 0.85487 1.86217 1.81466 1.37780 1.16548 1.20313 0.97567 0.92396 0.87653 1.22154 1.02579 0.92735 1.01675 1.22438 0.97120 1.02527 0.91876 1.23276 0.96670 0.90610 1.00602 1.67737 1.16001 1.08977 1.25825 1.22270 1.00194 1.01249 0.87188 1.20650 0.79148 0.85000 0.85430 1.90763 1.41495 1.25636 1.87043 1.45766 1.57206 1.28282 1.04109 1.20916 0.92953 0.96966 0.84361 0.91538 1.21815 0.96298 1.00985 0.96581 1.21372 0.98726 0.99602 0.94349 1.21247 0.95816 0.99993 0.93099 0.91224 1.20905 0.85579 0.95746 0.95197 1.42615 1.15618 1.48296 1.32198 1.19706 0.97663 1.16604 1.03678 0.90767 1.25574 0.98617 1.00333 1.02485 1.69826 1.15949 1.34263 1.42096 0.85066 0.78186 0.77511 0.78970 1.19033 1.22223 1.21812 1.21430 0.93761 1.00605 0.98329 1.21712 0.99210 1.02141 0.91683 0.92143 0.86905 0.89191 0.81071 0.80581 0.80042 0.82791 0.74109 0.94056 0.90601 0.94180 0.93279 0.95851 0.96967 0.79389 0.94052 0.89781 0.91933 0.89361 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 9.15 71.98 0.66 -0.47 16 2 C 0.07 0.87 2.64 29.85 0.08 0.95 16 3 H 0.13 0.89 6.34 -2.39 -0.02 0.87 16 4 O -0.31 -6.47 9.35 -73.57 -0.69 -7.16 16 5 C 0.07 1.21 6.62 22.60 0.15 1.36 16 6 C -0.17 -1.70 8.36 22.56 0.19 -1.51 16 7 C -0.12 -0.99 10.11 22.34 0.23 -0.77 16 8 C 0.05 0.58 11.18 84.70 0.95 1.52 16 9 N -0.48 -9.44 10.36 -195.44 -2.02 -11.46 16 10 C 0.05 1.00 11.14 84.80 0.94 1.95 16 11 C 0.51 10.59 7.14 87.66 0.63 11.22 16 12 O -0.57 -18.85 16.17 15.97 0.26 -18.60 16 13 N -0.70 -10.12 5.04 -442.55 -2.23 -12.35 16 14 C 0.15 3.06 2.46 44.99 0.11 3.17 16 15 H 0.07 1.70 7.58 -2.39 -0.02 1.69 16 16 C -0.12 -3.08 5.49 30.59 0.17 -2.92 16 17 C -0.10 -3.33 5.08 30.60 0.16 -3.17 16 18 C -0.08 -2.50 2.23 -10.79 -0.02 -2.53 16 19 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 20 C 0.15 6.09 5.65 86.38 0.49 6.58 16 21 N -0.74 -38.61 5.33 -343.44 -1.83 -40.44 16 22 C -0.24 -14.01 9.99 84.03 0.84 -13.17 16 23 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 24 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 25 N -0.97 -60.52 13.06 21.65 0.28 -60.24 16 26 Si 0.97 47.05 29.55 68.60 2.03 49.08 16 27 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 28 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 29 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 30 C -0.10 -2.16 5.20 30.58 0.16 -2.00 16 31 C -0.11 -1.61 5.39 30.58 0.16 -1.45 16 32 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.11 0.04 7.92 -2.39 -0.02 0.02 16 34 H 0.09 0.37 6.97 -2.39 -0.02 0.35 16 35 H 0.17 0.58 5.60 -2.91 -0.02 0.56 16 36 H 0.18 0.10 8.06 -2.91 -0.02 0.08 16 37 H 0.18 1.22 8.06 -2.91 -0.02 1.19 16 38 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 39 H 0.42 2.35 8.39 -92.70 -0.78 1.57 16 40 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.04 1.59 7.18 -2.39 -0.02 1.57 16 43 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 44 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.37 20.56 6.85 -92.71 -0.64 19.92 16 47 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 48 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 51 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -83.33 410.19 1.67 -81.66 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: -0.47 Total: 24.87 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 6.35 Total: -5.36 kcal Atomic # 7 Polarization: -118.69 SS G_CDS: -5.80 Total: -124.49 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.43 Total: -25.75 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -83.33 1.67 -81.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272762917.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.160 kcal (2) G-P(sol) polarization free energy of solvation -83.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds