Wall clock time and date at job start Wed Apr 1 2020 05:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47155 * 2 1 4 4 O 1.42902 * 109.47377 * 120.00003 * 2 1 3 5 5 C 1.35910 * 117.00289 * 274.88510 * 4 2 1 6 6 C 1.39140 * 120.46790 * 5.08155 * 5 4 2 7 7 C 1.38547 * 118.37124 * 179.71716 * 6 5 4 8 8 C 1.38257 * 119.21485 * 0.57503 * 7 6 5 9 9 N 1.31842 * 120.89294 * 359.68494 * 8 7 6 10 10 C 1.31842 * 121.77597 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47405 * 240.00334 * 2 1 3 12 12 O 1.21287 * 120.00060 * 245.00393 * 11 2 1 13 13 N 1.34777 * 120.00289 * 64.99635 * 11 2 1 14 14 C 1.46491 * 120.00156 * 180.02562 * 13 11 2 15 15 H 1.08998 * 109.47415 * 35.00289 * 14 13 11 16 16 C 1.53007 * 109.47064 * 155.00365 * 14 13 11 17 17 C 1.53005 * 109.46926 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47014 * 299.99421 * 17 16 14 19 19 H 1.08998 * 109.47442 * 300.00571 * 18 17 16 20 20 C 1.52995 * 109.47199 * 180.02562 * 18 17 16 21 21 N 1.46495 * 109.47368 * 65.00119 * 20 18 17 22 22 C 1.36936 * 120.00568 * 180.02562 * 21 20 18 23 23 H 1.08003 * 119.99653 * 0.02562 * 22 21 20 24 24 C 1.38805 * 120.00651 * 180.02562 * 22 21 20 25 25 N 1.31623 * 119.99494 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00374 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47302 * 59.99955 * 26 24 22 28 28 H 1.48507 * 109.47344 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47274 * 299.99641 * 26 24 22 30 30 C 1.53007 * 109.47093 * 60.00252 * 18 17 16 31 31 C 1.53000 * 109.46943 * 274.99827 * 14 13 11 32 32 H 1.08995 * 109.47352 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47181 * 299.99898 * 1 2 3 34 34 H 1.09005 * 109.47363 * 59.99797 * 1 2 3 35 35 H 1.07999 * 120.81732 * 359.97438 * 6 5 4 36 36 H 1.07992 * 120.39122 * 180.25531 * 7 6 5 37 37 H 1.08003 * 119.55469 * 179.70370 * 8 7 6 38 38 H 1.08011 * 119.65453 * 179.97438 * 10 9 8 39 39 H 0.97006 * 119.99375 * 0.02562 * 13 11 2 40 40 H 1.08998 * 109.47066 * 59.99710 * 16 14 13 41 41 H 1.08994 * 109.46783 * 299.99400 * 16 14 13 42 42 H 1.09000 * 109.47073 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.47206 * 59.99525 * 17 16 14 44 44 H 1.09000 * 109.47478 * 185.00332 * 20 18 17 45 45 H 1.09007 * 109.47182 * 305.00007 * 20 18 17 46 46 H 0.97004 * 119.99732 * 359.97438 * 21 20 18 47 47 H 0.97000 * 119.99685 * 179.97438 * 25 24 22 48 48 H 1.08998 * 109.46717 * 59.99874 * 30 18 17 49 49 H 1.09000 * 109.46997 * 179.97438 * 30 18 17 50 50 H 1.09001 * 109.47217 * 60.00576 * 31 14 13 51 51 H 1.09001 * 109.47219 * 299.99970 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1148 0.0632 2.3036 6 6 1.6730 1.3822 2.3344 7 6 1.7991 2.0914 3.5179 8 6 2.3663 1.4740 4.6173 9 7 2.7800 0.2238 4.5532 10 6 2.6728 -0.4871 3.4480 11 6 2.0323 -0.7103 -1.2305 12 8 2.6530 -1.7467 -1.1215 13 7 1.7919 -0.1941 -2.4520 14 6 2.2798 -0.8849 -3.6482 15 1 2.2323 -1.9624 -3.4903 16 6 1.4079 -0.5062 -4.8471 17 6 1.9179 -1.2272 -6.0966 18 6 3.3659 -0.8143 -6.3683 19 1 3.4130 0.2632 -6.5259 20 6 3.8757 -1.5348 -7.6180 21 7 3.1176 -1.0813 -8.7866 22 6 3.3990 -1.5918 -10.0257 23 1 4.1796 -2.3292 -10.1414 24 6 2.6811 -1.1617 -11.1331 25 7 1.7294 -0.2635 -10.9920 26 14 3.0645 -1.8587 -12.8232 27 1 2.8579 -3.3292 -12.8108 28 1 2.1635 -1.2412 -13.8294 29 1 4.4764 -1.5601 -13.1731 30 6 4.2378 -1.1930 -5.1693 31 6 3.7279 -0.4726 -3.9202 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 1.2385 1.8407 1.4584 36 1 1.4631 3.1158 3.5794 37 1 2.4717 2.0233 5.5413 38 1 3.0234 -1.5086 3.4336 39 1 1.2957 0.6349 -2.5391 40 1 1.4554 0.5713 -5.0050 41 1 0.3764 -0.7999 -4.6534 42 1 1.2966 -0.9578 -6.9506 43 1 1.8709 -2.3047 -5.9389 44 1 4.9327 -1.3103 -7.7611 45 1 3.7461 -2.6102 -7.4958 46 1 2.4157 -0.4198 -8.6826 47 1 1.2279 0.0374 -11.7659 48 1 4.1907 -2.2705 -5.0118 49 1 5.2694 -0.8992 -5.3632 50 1 4.3490 -0.7424 -3.0661 51 1 3.7753 0.6049 -4.0781 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272762918.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:16 Heat of formation + Delta-G solvation = -42.706274 kcal Electronic energy + Delta-G solvation = -29758.353588 eV Core-core repulsion = 25657.654925 eV Total energy + Delta-G solvation = -4100.698663 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.35292 -40.28402 -38.89976 -37.95742 -35.28933 -33.89972 -32.83273 -32.60456 -31.22729 -30.70994 -30.45903 -28.94561 -25.73554 -24.90812 -24.15159 -23.44295 -22.84911 -22.27379 -20.84801 -20.61910 -19.59653 -18.96576 -17.98515 -17.22679 -17.09977 -16.59879 -16.36500 -16.14935 -15.27709 -14.98106 -14.74621 -14.61461 -14.41259 -14.24256 -14.09641 -13.85720 -13.78342 -13.50229 -13.23732 -13.15026 -12.87738 -12.70433 -12.51214 -12.15767 -12.10717 -12.03031 -11.81429 -11.72804 -11.18106 -11.02152 -10.87002 -10.79129 -10.39050 -10.30278 -10.16871 -10.11884 -10.08481 -10.04815 -9.84645 -9.57315 -9.23532 -8.91365 -8.84790 -6.89305 -5.75655 -3.03277 0.64488 0.73711 2.09340 2.22381 3.10345 3.31838 3.44821 3.49042 3.50080 3.95242 4.07341 4.15817 4.22897 4.26637 4.33908 4.59231 4.60045 4.68014 4.72504 4.79255 4.93315 4.99014 5.04550 5.23962 5.24524 5.31310 5.43862 5.48097 5.53019 5.54494 5.55020 5.58860 5.61359 5.66915 5.88509 5.93459 5.99289 6.07035 6.20445 6.26743 6.27523 6.31675 6.41602 6.54215 6.66561 6.70040 6.86408 6.97614 7.15295 7.49440 7.71263 7.86128 8.44077 9.55045 10.14028 10.48780 11.47361 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.035999 B = 0.001547 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.616020 B =18091.876933 C =18364.432681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.064 3.936 3 H 0.098 0.902 4 O -0.277 6.277 5 C 0.083 3.917 6 C -0.170 4.170 7 C -0.130 4.130 8 C 0.056 3.944 9 N -0.447 5.447 10 C 0.078 3.922 11 C 0.517 3.483 12 O -0.512 6.512 13 N -0.720 5.720 14 C 0.146 3.854 15 H 0.090 0.910 16 C -0.124 4.124 17 C -0.106 4.106 18 C -0.095 4.095 19 H 0.070 0.930 20 C 0.156 3.844 21 N -0.732 5.732 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.935 5.935 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C -0.108 4.108 31 C -0.125 4.125 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.159 0.841 38 H 0.166 0.834 39 H 0.399 0.601 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.018 0.982 45 H 0.019 0.981 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.064 0.936 49 H 0.065 0.935 50 H 0.063 0.937 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.667 7.098 30.037 31.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.004 3.996 3 H 0.116 0.884 4 O -0.187 6.187 5 C 0.035 3.965 6 C -0.197 4.197 7 C -0.150 4.150 8 C -0.101 4.101 9 N -0.155 5.155 10 C -0.081 4.081 11 C 0.301 3.699 12 O -0.386 6.386 13 N -0.372 5.372 14 C 0.043 3.957 15 H 0.108 0.892 16 C -0.162 4.162 17 C -0.144 4.144 18 C -0.113 4.113 19 H 0.088 0.912 20 C 0.029 3.971 21 N -0.376 5.376 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.211 4.211 25 N -0.584 5.584 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C -0.147 4.147 31 C -0.164 4.164 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.176 0.824 38 H 0.183 0.817 39 H 0.233 0.767 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.035 0.965 45 H 0.036 0.964 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.081 0.919 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.729 5.634 30.676 31.309 hybrid contribution -0.790 1.025 -1.850 2.258 sum -3.519 6.659 28.826 29.794 Atomic orbital electron populations 1.22341 0.92260 1.04844 1.03957 1.22286 0.95989 0.97035 0.84277 0.88443 1.86259 1.80703 1.36356 1.15428 1.20260 0.96703 0.91206 0.88324 1.21792 1.03699 0.94002 1.00200 1.22024 0.98800 1.01197 0.92962 1.22716 0.97202 0.91282 0.98916 1.67769 1.14806 1.07471 1.25497 1.22299 0.98597 1.01079 0.86142 1.19952 0.80266 0.85642 0.84050 1.90774 1.38903 1.22768 1.86183 1.46036 1.57900 1.27877 1.05394 1.21159 0.93837 0.97902 0.82794 0.89208 1.21841 0.98653 1.01360 0.94341 1.21487 0.96632 0.99922 0.96384 1.21351 0.94486 1.00735 0.94765 0.91186 1.20687 0.94506 0.95836 0.86105 1.42368 1.42209 1.50511 1.02508 1.19210 1.14613 1.18180 0.84912 0.91313 1.24715 0.98791 0.99650 0.97905 1.69647 1.25200 1.34120 1.29470 0.86270 0.77363 0.78365 0.84211 1.21311 1.21721 1.21322 1.21477 0.99316 1.00442 0.93450 1.21882 0.95351 1.00649 0.98518 0.90300 0.90695 0.89890 0.84099 0.84341 0.82410 0.81699 0.76669 0.91425 0.91590 0.90110 0.91955 0.96457 0.96360 0.78299 0.93563 0.91756 0.91632 0.91869 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.90 9.15 37.15 0.34 -0.56 16 2 C 0.06 0.48 2.64 -27.89 -0.07 0.40 16 3 H 0.10 0.48 6.32 -51.93 -0.33 0.16 16 4 O -0.28 -2.77 9.35 -39.32 -0.37 -3.14 16 5 C 0.08 0.72 6.62 -39.08 -0.26 0.46 16 6 C -0.17 -1.07 8.35 -39.13 -0.33 -1.39 16 7 C -0.13 -0.71 10.11 -39.46 -0.40 -1.11 16 8 C 0.06 0.38 11.18 -17.54 -0.20 0.18 16 9 N -0.45 -4.15 10.36 -13.12 -0.14 -4.29 16 10 C 0.08 0.71 11.14 -17.38 -0.19 0.52 16 11 C 0.52 5.39 7.14 -10.99 -0.08 5.31 16 12 O -0.51 -7.78 16.17 -14.31 -0.23 -8.01 16 13 N -0.72 -6.06 5.04 -53.81 -0.27 -6.33 16 14 C 0.15 1.58 2.46 -67.93 -0.17 1.41 16 15 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 16 C -0.12 -1.34 5.39 -26.72 -0.14 -1.48 16 17 C -0.11 -1.53 5.08 -26.73 -0.14 -1.66 16 18 C -0.09 -1.46 2.22 -90.62 -0.20 -1.66 16 19 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 20 C 0.16 3.12 5.65 -4.05 -0.02 3.09 16 21 N -0.73 -18.31 5.33 -59.91 -0.32 -18.63 16 22 C -0.24 -6.67 9.99 -15.06 -0.15 -6.83 16 23 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 24 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 25 N -0.94 -28.02 13.06 55.49 0.72 -27.30 16 26 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 30 C -0.11 -1.41 5.20 -26.75 -0.14 -1.55 16 31 C -0.13 -1.43 5.49 -26.76 -0.15 -1.58 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.31 6.98 -51.93 -0.36 -0.05 16 34 H 0.08 0.26 7.93 -51.93 -0.41 -0.16 16 35 H 0.14 0.54 5.61 -52.49 -0.29 0.25 16 36 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 37 H 0.16 0.65 8.06 -52.48 -0.42 0.22 16 38 H 0.17 1.35 8.06 -52.48 -0.42 0.93 16 39 H 0.40 2.10 8.39 -40.82 -0.34 1.75 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 1.37 7.18 -51.93 -0.37 0.99 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.38 9.93 6.85 -40.82 -0.28 9.65 16 47 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 410.19 15.07 6.18 6.18 Total: -1.00 -34.91 410.19 -10.08 -44.99 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -8.25 Total: 6.08 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -2.39 Total: -6.96 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.00 Total: -56.54 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -0.60 Total: -11.16 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.91 -10.08 -44.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272762918.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.286 kcal (2) G-P(sol) polarization free energy of solvation -34.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds