Wall clock time and date at job start Wed Apr 1 2020 05:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47155 * 2 1 4 4 O 1.42902 * 109.47377 * 120.00003 * 2 1 3 5 5 C 1.35910 * 117.00289 * 274.88510 * 4 2 1 6 6 C 1.39140 * 120.46790 * 5.08155 * 5 4 2 7 7 C 1.38547 * 118.37124 * 179.71716 * 6 5 4 8 8 C 1.38257 * 119.21485 * 0.57503 * 7 6 5 9 9 N 1.31842 * 120.89294 * 359.68494 * 8 7 6 10 10 C 1.31842 * 121.77597 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47405 * 240.00334 * 2 1 3 12 12 O 1.21287 * 120.00060 * 245.00393 * 11 2 1 13 13 N 1.34777 * 120.00289 * 64.99635 * 11 2 1 14 14 C 1.46491 * 120.00156 * 180.02562 * 13 11 2 15 15 H 1.08998 * 109.47415 * 35.00289 * 14 13 11 16 16 C 1.53007 * 109.47064 * 155.00365 * 14 13 11 17 17 C 1.53005 * 109.46926 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47014 * 299.99421 * 17 16 14 19 19 H 1.08998 * 109.47442 * 300.00571 * 18 17 16 20 20 C 1.52995 * 109.47199 * 180.02562 * 18 17 16 21 21 N 1.46495 * 109.47368 * 65.00119 * 20 18 17 22 22 C 1.36936 * 120.00568 * 180.02562 * 21 20 18 23 23 H 1.08003 * 119.99653 * 0.02562 * 22 21 20 24 24 C 1.38805 * 120.00651 * 180.02562 * 22 21 20 25 25 N 1.31623 * 119.99494 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00374 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47302 * 59.99955 * 26 24 22 28 28 H 1.48507 * 109.47344 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47274 * 299.99641 * 26 24 22 30 30 C 1.53007 * 109.47093 * 60.00252 * 18 17 16 31 31 C 1.53000 * 109.46943 * 274.99827 * 14 13 11 32 32 H 1.08995 * 109.47352 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47181 * 299.99898 * 1 2 3 34 34 H 1.09005 * 109.47363 * 59.99797 * 1 2 3 35 35 H 1.07999 * 120.81732 * 359.97438 * 6 5 4 36 36 H 1.07992 * 120.39122 * 180.25531 * 7 6 5 37 37 H 1.08003 * 119.55469 * 179.70370 * 8 7 6 38 38 H 1.08011 * 119.65453 * 179.97438 * 10 9 8 39 39 H 0.97006 * 119.99375 * 0.02562 * 13 11 2 40 40 H 1.08998 * 109.47066 * 59.99710 * 16 14 13 41 41 H 1.08994 * 109.46783 * 299.99400 * 16 14 13 42 42 H 1.09000 * 109.47073 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.47206 * 59.99525 * 17 16 14 44 44 H 1.09000 * 109.47478 * 185.00332 * 20 18 17 45 45 H 1.09007 * 109.47182 * 305.00007 * 20 18 17 46 46 H 0.97004 * 119.99732 * 359.97438 * 21 20 18 47 47 H 0.97000 * 119.99685 * 179.97438 * 25 24 22 48 48 H 1.08998 * 109.46717 * 59.99874 * 30 18 17 49 49 H 1.09000 * 109.46997 * 179.97438 * 30 18 17 50 50 H 1.09001 * 109.47217 * 60.00576 * 31 14 13 51 51 H 1.09001 * 109.47219 * 299.99970 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1148 0.0632 2.3036 6 6 1.6730 1.3822 2.3344 7 6 1.7991 2.0914 3.5179 8 6 2.3663 1.4740 4.6173 9 7 2.7800 0.2238 4.5532 10 6 2.6728 -0.4871 3.4480 11 6 2.0323 -0.7103 -1.2305 12 8 2.6530 -1.7467 -1.1215 13 7 1.7919 -0.1941 -2.4520 14 6 2.2798 -0.8849 -3.6482 15 1 2.2323 -1.9624 -3.4903 16 6 1.4079 -0.5062 -4.8471 17 6 1.9179 -1.2272 -6.0966 18 6 3.3659 -0.8143 -6.3683 19 1 3.4130 0.2632 -6.5259 20 6 3.8757 -1.5348 -7.6180 21 7 3.1176 -1.0813 -8.7866 22 6 3.3990 -1.5918 -10.0257 23 1 4.1796 -2.3292 -10.1414 24 6 2.6811 -1.1617 -11.1331 25 7 1.7294 -0.2635 -10.9920 26 14 3.0645 -1.8587 -12.8232 27 1 2.8579 -3.3292 -12.8108 28 1 2.1635 -1.2412 -13.8294 29 1 4.4764 -1.5601 -13.1731 30 6 4.2378 -1.1930 -5.1693 31 6 3.7279 -0.4726 -3.9202 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 1.2385 1.8407 1.4584 36 1 1.4631 3.1158 3.5794 37 1 2.4717 2.0233 5.5413 38 1 3.0234 -1.5086 3.4336 39 1 1.2957 0.6349 -2.5391 40 1 1.4554 0.5713 -5.0050 41 1 0.3764 -0.7999 -4.6534 42 1 1.2966 -0.9578 -6.9506 43 1 1.8709 -2.3047 -5.9389 44 1 4.9327 -1.3103 -7.7611 45 1 3.7461 -2.6102 -7.4958 46 1 2.4157 -0.4198 -8.6826 47 1 1.2279 0.0374 -11.7659 48 1 4.1907 -2.2705 -5.0118 49 1 5.2694 -0.8992 -5.3632 50 1 4.3490 -0.7424 -3.0661 51 1 3.7753 0.6049 -4.0781 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272762918.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:15 Heat of formation + Delta-G solvation = -65.518770 kcal Electronic energy + Delta-G solvation = -29759.342812 eV Core-core repulsion = 25657.654925 eV Total energy + Delta-G solvation = -4101.687887 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.95800 -41.05674 -39.76365 -38.83635 -36.71532 -35.26392 -33.68212 -33.19166 -32.71137 -31.74245 -31.08373 -30.28947 -26.95933 -25.86478 -24.89909 -24.50136 -23.75631 -23.50092 -21.99066 -21.48958 -20.73113 -19.50558 -19.15358 -18.67541 -17.75648 -17.29866 -17.13014 -16.79644 -16.67104 -16.16807 -15.70508 -15.49236 -15.37362 -15.27608 -15.23491 -14.81892 -14.77257 -14.65888 -14.37298 -13.96736 -13.86986 -13.40695 -13.33200 -13.24991 -13.12735 -13.09527 -12.88580 -12.70152 -12.64237 -12.31414 -12.20210 -12.13432 -12.02859 -11.83937 -11.47752 -11.30878 -11.15722 -10.88798 -10.88673 -10.70187 -10.57831 -10.11260 -9.47639 -8.96863 -7.94249 -5.21934 0.14123 0.23381 1.44737 1.46000 1.47547 1.50161 1.56292 2.45306 2.56877 2.79500 3.38848 3.41343 3.56987 3.61747 3.69482 3.75640 3.76290 3.82874 3.88210 3.92895 4.06020 4.14494 4.21637 4.32014 4.42042 4.45324 4.52478 4.57363 4.58914 4.60271 4.63185 4.77431 4.80468 4.93420 5.01440 5.04638 5.07445 5.09686 5.12493 5.13145 5.20574 5.22938 5.32275 5.41534 5.47022 5.48056 5.53992 5.61381 6.13333 6.28713 6.48203 6.96791 7.14312 7.35362 8.12082 8.36883 9.28856 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.035999 B = 0.001547 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.616020 B =18091.876933 C =18364.432681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.066 3.934 3 H 0.130 0.870 4 O -0.306 6.306 5 C 0.069 3.931 6 C -0.166 4.166 7 C -0.121 4.121 8 C 0.046 3.954 9 N -0.476 5.476 10 C 0.050 3.950 11 C 0.514 3.486 12 O -0.569 6.569 13 N -0.702 5.702 14 C 0.153 3.847 15 H 0.067 0.933 16 C -0.111 4.111 17 C -0.103 4.103 18 C -0.082 4.082 19 H 0.070 0.930 20 C 0.153 3.847 21 N -0.741 5.741 22 C -0.249 4.249 23 H 0.071 0.929 24 C -0.072 4.072 25 N -0.966 5.966 26 Si 0.972 3.028 27 H -0.280 1.280 28 H -0.293 1.293 29 H -0.279 1.279 30 C -0.102 4.102 31 C -0.117 4.117 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.171 0.829 36 H 0.176 0.824 37 H 0.182 0.818 38 H 0.156 0.844 39 H 0.419 0.581 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.015 0.985 45 H 0.013 0.987 46 H 0.376 0.624 47 H 0.251 0.749 48 H 0.058 0.942 49 H 0.069 0.931 50 H 0.055 0.945 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.466 9.528 30.864 32.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.007 3.993 3 H 0.147 0.853 4 O -0.219 6.219 5 C 0.021 3.979 6 C -0.192 4.192 7 C -0.140 4.140 8 C -0.111 4.111 9 N -0.185 5.185 10 C -0.108 4.108 11 C 0.300 3.700 12 O -0.447 6.447 13 N -0.355 5.355 14 C 0.048 3.952 15 H 0.085 0.915 16 C -0.149 4.149 17 C -0.142 4.142 18 C -0.101 4.101 19 H 0.088 0.912 20 C 0.026 3.974 21 N -0.384 5.384 22 C -0.381 4.381 23 H 0.088 0.912 24 C -0.265 4.265 25 N -0.617 5.617 26 Si 0.801 3.199 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.205 1.205 30 C -0.141 4.141 31 C -0.156 4.156 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.128 0.872 35 H 0.188 0.812 36 H 0.193 0.807 37 H 0.199 0.801 38 H 0.173 0.827 39 H 0.257 0.743 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.033 0.967 45 H 0.031 0.969 46 H 0.209 0.791 47 H 0.060 0.940 48 H 0.077 0.923 49 H 0.088 0.912 50 H 0.074 0.926 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.526 8.076 31.520 32.729 hybrid contribution -0.507 0.276 -2.050 2.130 sum -4.033 8.352 29.470 30.895 Atomic orbital electron populations 1.22365 0.90269 1.04257 1.06008 1.22439 0.97289 0.97544 0.82056 0.85304 1.86218 1.81380 1.37856 1.16403 1.20309 0.97587 0.92317 0.87659 1.22150 1.02667 0.92786 1.01602 1.22431 0.97148 1.02553 0.91861 1.23266 0.96634 0.90635 1.00590 1.67739 1.16037 1.08941 1.25808 1.22277 1.00152 1.01283 0.87078 1.20582 0.79192 0.84981 0.85250 1.90754 1.41551 1.25361 1.87010 1.45792 1.57313 1.28207 1.04177 1.20900 0.93645 0.96966 0.83668 0.91516 1.21702 0.99100 1.01847 0.92205 1.21390 0.95585 0.99931 0.97274 1.21219 0.95434 0.99963 0.93481 0.91207 1.20858 0.93937 0.95959 0.86601 1.42531 1.42486 1.50287 1.03110 1.19599 1.14305 1.17905 0.86329 0.91150 1.25508 0.99043 1.00432 1.01488 1.69794 1.26262 1.35500 1.30129 0.85245 0.77239 0.77771 0.79694 1.20628 1.21899 1.20529 1.21400 0.99115 1.00386 0.93168 1.21794 0.95454 1.01285 0.97052 0.92265 0.89167 0.87226 0.81193 0.80687 0.80074 0.82655 0.74272 0.89648 0.90140 0.92835 0.92785 0.96684 0.96877 0.79106 0.93980 0.92335 0.91215 0.92645 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 9.15 71.98 0.66 -0.61 16 2 C 0.07 0.84 2.64 29.85 0.08 0.92 16 3 H 0.13 0.78 6.32 -2.38 -0.02 0.76 16 4 O -0.31 -6.08 9.35 -73.54 -0.69 -6.77 16 5 C 0.07 1.15 6.62 22.60 0.15 1.30 16 6 C -0.17 -1.58 8.35 22.56 0.19 -1.39 16 7 C -0.12 -0.90 10.11 22.35 0.23 -0.68 16 8 C 0.05 0.54 11.18 84.70 0.95 1.49 16 9 N -0.48 -8.88 10.36 -195.44 -2.02 -10.91 16 10 C 0.05 0.96 11.14 84.80 0.94 1.90 16 11 C 0.51 10.13 7.14 87.66 0.63 10.76 16 12 O -0.57 -17.66 16.17 15.94 0.26 -17.40 16 13 N -0.70 -10.15 5.04 -442.53 -2.23 -12.38 16 14 C 0.15 3.07 2.46 45.00 0.11 3.18 16 15 H 0.07 1.71 7.58 -2.39 -0.02 1.69 16 16 C -0.11 -2.17 5.39 30.60 0.16 -2.00 16 17 C -0.10 -2.96 5.08 30.60 0.16 -2.80 16 18 C -0.08 -2.50 2.22 -10.79 -0.02 -2.52 16 19 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 20 C 0.15 6.17 5.65 86.38 0.49 6.65 16 21 N -0.74 -37.61 5.33 -343.47 -1.83 -39.44 16 22 C -0.25 -14.10 9.99 84.03 0.84 -13.26 16 23 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 24 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 25 N -0.97 -58.43 13.06 21.65 0.28 -58.15 16 26 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 27 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 28 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 29 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 30 C -0.10 -2.59 5.20 30.58 0.16 -2.43 16 31 C -0.12 -2.50 5.49 30.58 0.17 -2.33 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.09 0.42 6.98 -2.38 -0.02 0.41 16 34 H 0.11 0.21 7.93 -2.38 -0.02 0.19 16 35 H 0.17 0.50 5.61 -2.91 -0.02 0.48 16 36 H 0.18 0.01 8.06 -2.91 -0.02 -0.02 16 37 H 0.18 1.06 8.06 -2.91 -0.02 1.03 16 38 H 0.16 2.97 8.06 -2.90 -0.02 2.94 16 39 H 0.42 2.75 8.39 -92.70 -0.78 1.97 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 42 H 0.05 1.83 7.18 -2.39 -0.02 1.82 16 43 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 46 H 0.38 19.88 6.85 -92.71 -0.63 19.25 16 47 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 48 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -78.93 410.19 1.67 -77.26 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -0.47 Total: 25.11 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 6.35 Total: -5.53 kcal Atomic # 7 Polarization: -115.08 SS G_CDS: -5.80 Total: -120.88 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.43 Total: -24.17 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -78.93 1.67 -77.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272762918.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.741 kcal (2) G-P(sol) polarization free energy of solvation -78.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds