Wall clock time and date at job start Wed Apr 1 2020 05:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47005 * 2 1 4 4 O 1.42895 * 109.47327 * 239.99931 * 2 1 3 5 5 C 1.35911 * 117.00194 * 85.59655 * 4 2 1 6 6 C 1.39140 * 120.47124 * 354.76239 * 5 4 2 7 7 C 1.38533 * 118.37333 * 180.02562 * 6 5 4 8 8 C 1.38254 * 119.22188 * 359.97438 * 7 6 5 9 9 N 1.31849 * 120.88862 * 0.02562 * 8 7 6 10 10 C 1.31843 * 121.77670 * 0.02562 * 9 8 7 11 11 C 1.50701 * 109.46665 * 120.00032 * 2 1 3 12 12 O 1.21282 * 119.99988 * 120.00100 * 11 2 1 13 13 N 1.34781 * 120.00339 * 299.99623 * 11 2 1 14 14 C 1.46491 * 120.00152 * 184.81940 * 13 11 2 15 15 H 1.08997 * 109.47444 * 33.61233 * 14 13 11 16 16 C 1.53001 * 109.47098 * 153.60939 * 14 13 11 17 17 N 1.46501 * 109.46919 * 303.03671 * 16 14 13 18 18 C 1.36937 * 119.99924 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99969 * 0.02562 * 18 17 16 20 20 C 1.38808 * 120.00062 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00152 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 120.00091 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47138 * 59.99488 * 22 20 18 24 24 H 1.48503 * 109.47193 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46727 * 299.99731 * 22 20 18 26 26 C 1.52999 * 109.47108 * 273.60825 * 14 13 11 27 27 C 1.54265 * 110.03335 * 297.98521 * 26 14 13 28 28 C 1.54962 * 104.15893 * 217.13937 * 27 26 14 29 29 C 1.54890 * 102.78229 * 37.88791 * 28 27 26 30 30 C 1.53881 * 110.02940 * 180.76891 * 26 14 13 31 31 H 1.08994 * 109.47000 * 300.00239 * 1 2 3 32 32 H 1.09007 * 109.46762 * 60.00047 * 1 2 3 33 33 H 1.08997 * 109.47434 * 179.97438 * 1 2 3 34 34 H 1.08001 * 120.81148 * 0.02562 * 6 5 4 35 35 H 1.07998 * 120.38608 * 179.97438 * 7 6 5 36 36 H 1.07999 * 119.55452 * 180.02562 * 8 7 6 37 37 H 1.08000 * 119.65415 * 179.97438 * 10 9 8 38 38 H 0.97008 * 119.99298 * 4.82497 * 13 11 2 39 39 H 1.09001 * 109.46869 * 63.03355 * 16 14 13 40 40 H 1.08998 * 109.47173 * 183.03714 * 16 14 13 41 41 H 0.96993 * 120.00332 * 359.97438 * 17 16 14 42 42 H 0.97000 * 120.00182 * 180.02562 * 21 20 18 43 43 H 1.08999 * 110.01559 * 59.38162 * 26 14 13 44 44 H 1.09000 * 110.48529 * 335.77991 * 27 26 14 45 45 H 1.08994 * 110.48659 * 98.42581 * 27 26 14 46 46 H 1.09008 * 110.72189 * 279.57126 * 28 27 26 47 47 H 1.08999 * 110.76658 * 156.22515 * 28 27 26 48 48 H 1.08995 * 110.48608 * 203.40748 * 29 28 27 49 49 H 1.08995 * 110.59568 * 80.81732 * 29 28 27 50 50 H 1.09004 * 110.03124 * 238.56897 * 30 26 14 51 51 H 1.08995 * 110.03238 * 359.95364 * 30 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.1245 0.0656 -2.3011 6 6 1.6889 1.3867 -2.3309 7 6 1.8296 2.0999 -3.5101 8 6 2.3942 1.4810 -4.6099 9 7 2.7969 0.2270 -4.5484 10 6 2.6799 -0.4865 -3.4459 11 6 2.0323 -0.7104 1.2305 12 8 2.7295 -1.6965 1.1193 13 7 1.7067 -0.2500 2.4547 14 6 2.2796 -0.8757 3.6489 15 1 3.2914 -1.2170 3.4304 16 6 2.3203 0.1436 4.7891 17 7 3.0861 1.3188 4.3663 18 6 3.2579 2.3700 5.2269 19 1 2.8291 2.3326 6.2175 20 6 3.9830 3.4838 4.8262 21 7 4.5059 3.5293 3.6191 22 14 4.2179 4.9175 6.0005 23 1 4.9250 4.4485 7.2191 24 1 5.0236 5.9739 5.3370 25 1 2.8923 5.4696 6.3789 26 6 1.4169 -2.0696 4.0627 27 6 -0.0054 -1.5939 4.4239 28 6 -0.4142 -2.4932 5.6179 29 6 0.9070 -2.6252 6.4155 30 6 1.9968 -2.7254 5.3283 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 1.2517 1.8449 -1.4560 35 1 1.5022 3.1273 -3.5696 36 1 2.5069 2.0321 -5.5319 37 1 3.0209 -1.5112 -3.4338 38 1 1.0929 0.4958 2.5448 39 1 1.3041 0.4445 5.0439 40 1 2.7957 -0.3054 5.6611 41 1 3.4714 1.3524 3.4768 42 1 5.0129 4.3074 3.3392 43 1 1.3728 -2.7969 3.2521 44 1 0.0073 -0.5458 4.7229 45 1 -0.6827 -1.7435 3.5831 46 1 -0.7532 -3.4683 5.2679 47 1 -1.1827 -2.0094 6.2207 48 1 0.8946 -3.5270 7.0275 49 1 1.0687 -1.7451 7.0378 50 1 2.2333 -3.7712 5.1320 51 1 2.8933 -2.1936 5.6470 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278268445.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:51 Heat of formation + Delta-G solvation = -34.285217 kcal Electronic energy + Delta-G solvation = -31281.302044 eV Core-core repulsion = 27180.968545 eV Total energy + Delta-G solvation = -4100.333499 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.96248 -39.97487 -38.71203 -37.63876 -35.25565 -33.74876 -32.58296 -32.29462 -31.01313 -30.15179 -29.48101 -28.57326 -26.31608 -25.07405 -23.96216 -23.44164 -22.78822 -21.89325 -20.68372 -20.13269 -18.90370 -18.57346 -17.71693 -17.03968 -16.86969 -16.24286 -16.16724 -15.79117 -15.39781 -15.03368 -14.62536 -14.54800 -14.44310 -14.03690 -13.82835 -13.74124 -13.50394 -13.28325 -13.13408 -13.04693 -12.60408 -12.48591 -12.32567 -12.10288 -11.73161 -11.54306 -11.38551 -11.14322 -11.00454 -10.97682 -10.93576 -10.87149 -10.73891 -10.43698 -10.26547 -9.97264 -9.94330 -9.81058 -9.74129 -9.56218 -8.95199 -8.74801 -8.54925 -7.02210 -5.85200 -3.15039 0.99240 1.09608 2.54542 2.72517 3.37400 3.42730 3.43492 3.58382 3.66213 4.34645 4.45238 4.49689 4.58558 4.62786 4.66466 4.72089 4.74123 4.84111 4.89479 4.95052 5.06988 5.29132 5.33702 5.39290 5.40284 5.46169 5.54375 5.58166 5.60061 5.73644 5.77651 5.78597 5.84819 5.90034 5.90642 5.91619 5.99076 6.06175 6.13504 6.22910 6.24485 6.28769 6.43747 6.45413 6.50356 6.70007 6.85934 7.05735 7.60848 7.69673 7.81652 8.32573 8.37070 9.44529 9.99979 10.35059 11.37020 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007310 B = 0.003559 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3829.412403 B = 7866.023670 C =10948.947944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.062 3.938 3 H 0.104 0.896 4 O -0.277 6.277 5 C 0.087 3.913 6 C -0.168 4.168 7 C -0.129 4.129 8 C 0.052 3.948 9 N -0.449 5.449 10 C 0.074 3.926 11 C 0.522 3.478 12 O -0.523 6.523 13 N -0.703 5.703 14 C 0.147 3.853 15 H 0.087 0.913 16 C 0.143 3.857 17 N -0.732 5.732 18 C -0.243 4.243 19 H 0.070 0.930 20 C -0.010 4.010 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.097 4.097 27 C -0.124 4.124 28 C -0.123 4.123 29 C -0.123 4.123 30 C -0.120 4.120 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.157 0.843 37 H 0.164 0.836 38 H 0.403 0.597 39 H 0.030 0.970 40 H 0.037 0.963 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.059 0.941 49 H 0.068 0.932 50 H 0.060 0.940 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.063 -7.846 -7.619 16.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.002 3.998 3 H 0.122 0.878 4 O -0.188 6.188 5 C 0.038 3.962 6 C -0.194 4.194 7 C -0.149 4.149 8 C -0.105 4.105 9 N -0.158 5.158 10 C -0.085 4.085 11 C 0.306 3.694 12 O -0.398 6.398 13 N -0.355 5.355 14 C 0.042 3.958 15 H 0.106 0.894 16 C 0.015 3.985 17 N -0.376 5.376 18 C -0.374 4.374 19 H 0.088 0.912 20 C -0.206 4.206 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.118 4.118 27 C -0.161 4.161 28 C -0.161 4.161 29 C -0.161 4.161 30 C -0.158 4.158 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.161 0.839 35 H 0.156 0.844 36 H 0.174 0.826 37 H 0.181 0.819 38 H 0.238 0.762 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.218 0.782 42 H 0.066 0.934 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.078 0.922 49 H 0.087 0.913 50 H 0.079 0.921 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.115 -9.032 -8.251 16.529 hybrid contribution -0.378 1.982 1.220 2.357 sum -11.493 -7.051 -7.031 15.207 Atomic orbital electron populations 1.22329 0.92674 1.04288 1.03901 1.22316 0.95638 0.97679 0.84130 0.87823 1.86220 1.80680 1.36248 1.15641 1.20260 0.96338 0.91211 0.88358 1.21843 1.03423 0.93940 1.00224 1.22013 0.98748 1.01101 0.92991 1.22654 0.97691 0.91293 0.98832 1.67732 1.14824 1.07507 1.25688 1.22228 0.98945 1.00986 0.86294 1.19841 0.80823 0.84689 0.84065 1.90722 1.37370 1.25319 1.86438 1.45796 1.48518 1.36481 1.04698 1.21330 0.97286 0.92796 0.84353 0.89448 1.21100 0.95837 0.87684 0.93855 1.42353 1.63098 1.15530 1.16660 1.19157 1.27953 0.94636 0.95704 0.91192 1.24732 1.00558 0.98573 0.96765 1.69650 1.39974 1.30421 1.17942 0.86286 0.77626 0.82255 0.80096 1.21223 1.21688 1.21256 1.22095 0.94958 0.96827 0.97876 1.22551 0.95564 1.00502 0.97505 1.22479 0.97243 0.99463 0.96886 1.22343 0.94687 1.01510 0.97520 1.22201 0.98959 1.00374 0.94314 0.89906 0.90918 0.90642 0.83922 0.84405 0.82584 0.81871 0.76183 0.95215 0.94510 0.78167 0.93411 0.90798 0.90385 0.92329 0.92044 0.91918 0.92182 0.91338 0.92101 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 9.10 37.16 0.34 -1.31 16 2 C 0.06 0.81 2.65 -27.88 -0.07 0.73 16 3 H 0.10 1.29 6.30 -51.93 -0.33 0.96 16 4 O -0.28 -4.01 9.34 -39.37 -0.37 -4.38 16 5 C 0.09 1.13 6.63 -39.07 -0.26 0.87 16 6 C -0.17 -1.88 8.37 -39.14 -0.33 -2.20 16 7 C -0.13 -1.26 10.11 -39.47 -0.40 -1.66 16 8 C 0.05 0.55 11.18 -17.54 -0.20 0.35 16 9 N -0.45 -5.72 10.36 -13.13 -0.14 -5.85 16 10 C 0.07 0.96 11.14 -17.37 -0.19 0.76 16 11 C 0.52 8.27 7.20 -10.98 -0.08 8.19 16 12 O -0.52 -10.27 16.19 -14.35 -0.23 -10.50 16 13 N -0.70 -10.32 4.19 -53.81 -0.23 -10.55 16 14 C 0.15 2.32 1.79 -67.94 -0.12 2.20 16 15 H 0.09 1.63 7.61 -51.93 -0.40 1.23 16 16 C 0.14 2.59 5.27 -4.04 -0.02 2.57 16 17 N -0.73 -17.18 5.45 -59.91 -0.33 -17.51 16 18 C -0.24 -6.44 9.99 -15.06 -0.15 -6.59 16 19 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 21 N -0.93 -27.14 13.06 55.49 0.72 -26.42 16 22 Si 0.91 21.63 29.55 -169.99 -5.02 16.60 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 26 C -0.10 -1.29 2.96 -89.50 -0.27 -1.56 16 27 C -0.12 -1.43 5.87 -25.03 -0.15 -1.57 16 28 C -0.12 -1.28 6.91 -24.70 -0.17 -1.45 16 29 C -0.12 -1.35 6.83 -25.07 -0.17 -1.52 16 30 C -0.12 -1.49 5.94 -25.61 -0.15 -1.64 16 31 H 0.08 0.65 7.46 -51.93 -0.39 0.27 16 32 H 0.07 0.60 7.03 -51.93 -0.36 0.23 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.14 1.37 5.63 -52.49 -0.30 1.08 16 35 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 38 H 0.40 5.37 7.91 -40.82 -0.32 5.05 16 39 H 0.03 0.52 5.88 -51.93 -0.31 0.22 16 40 H 0.04 0.69 6.53 -51.93 -0.34 0.35 16 41 H 0.38 9.73 7.40 -40.82 -0.30 9.42 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.08 0.96 5.58 -51.93 -0.29 0.67 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.07 0.99 6.28 -51.93 -0.33 0.67 16 LS Contribution 405.95 15.07 6.12 6.12 Total: -1.00 -32.58 405.95 -9.81 -42.39 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -7.85 Total: 14.30 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.49 Total: -4.19 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.04 Total: -60.33 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.60 Total: -14.88 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.58 -9.81 -42.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278268445.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.103 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds