Wall clock time and date at job start Wed Apr 1 2020 05:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47005 * 2 1 4 4 O 1.42895 * 109.47327 * 239.99931 * 2 1 3 5 5 C 1.35911 * 117.00194 * 85.59655 * 4 2 1 6 6 C 1.39140 * 120.47124 * 354.76239 * 5 4 2 7 7 C 1.38533 * 118.37333 * 180.02562 * 6 5 4 8 8 C 1.38254 * 119.22188 * 359.97438 * 7 6 5 9 9 N 1.31849 * 120.88862 * 0.02562 * 8 7 6 10 10 C 1.31843 * 121.77670 * 0.02562 * 9 8 7 11 11 C 1.50701 * 109.46665 * 120.00032 * 2 1 3 12 12 O 1.21282 * 119.99988 * 120.00100 * 11 2 1 13 13 N 1.34781 * 120.00339 * 299.99623 * 11 2 1 14 14 C 1.46491 * 120.00152 * 184.81940 * 13 11 2 15 15 H 1.08997 * 109.47444 * 33.61233 * 14 13 11 16 16 C 1.53001 * 109.47098 * 153.60939 * 14 13 11 17 17 N 1.46501 * 109.46919 * 303.03671 * 16 14 13 18 18 C 1.36937 * 119.99924 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99969 * 0.02562 * 18 17 16 20 20 C 1.38808 * 120.00062 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00152 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 120.00091 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47138 * 59.99488 * 22 20 18 24 24 H 1.48503 * 109.47193 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46727 * 299.99731 * 22 20 18 26 26 C 1.52999 * 109.47108 * 273.60825 * 14 13 11 27 27 C 1.54265 * 110.03335 * 297.98521 * 26 14 13 28 28 C 1.54962 * 104.15893 * 217.13937 * 27 26 14 29 29 C 1.54890 * 102.78229 * 37.88791 * 28 27 26 30 30 C 1.53881 * 110.02940 * 180.76891 * 26 14 13 31 31 H 1.08994 * 109.47000 * 300.00239 * 1 2 3 32 32 H 1.09007 * 109.46762 * 60.00047 * 1 2 3 33 33 H 1.08997 * 109.47434 * 179.97438 * 1 2 3 34 34 H 1.08001 * 120.81148 * 0.02562 * 6 5 4 35 35 H 1.07998 * 120.38608 * 179.97438 * 7 6 5 36 36 H 1.07999 * 119.55452 * 180.02562 * 8 7 6 37 37 H 1.08000 * 119.65415 * 179.97438 * 10 9 8 38 38 H 0.97008 * 119.99298 * 4.82497 * 13 11 2 39 39 H 1.09001 * 109.46869 * 63.03355 * 16 14 13 40 40 H 1.08998 * 109.47173 * 183.03714 * 16 14 13 41 41 H 0.96993 * 120.00332 * 359.97438 * 17 16 14 42 42 H 0.97000 * 120.00182 * 180.02562 * 21 20 18 43 43 H 1.08999 * 110.01559 * 59.38162 * 26 14 13 44 44 H 1.09000 * 110.48529 * 335.77991 * 27 26 14 45 45 H 1.08994 * 110.48659 * 98.42581 * 27 26 14 46 46 H 1.09008 * 110.72189 * 279.57126 * 28 27 26 47 47 H 1.08999 * 110.76658 * 156.22515 * 28 27 26 48 48 H 1.08995 * 110.48608 * 203.40748 * 29 28 27 49 49 H 1.08995 * 110.59568 * 80.81732 * 29 28 27 50 50 H 1.09004 * 110.03124 * 238.56897 * 30 26 14 51 51 H 1.08995 * 110.03238 * 359.95364 * 30 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.1245 0.0656 -2.3011 6 6 1.6889 1.3867 -2.3309 7 6 1.8296 2.0999 -3.5101 8 6 2.3942 1.4810 -4.6099 9 7 2.7969 0.2270 -4.5484 10 6 2.6799 -0.4865 -3.4459 11 6 2.0323 -0.7104 1.2305 12 8 2.7295 -1.6965 1.1193 13 7 1.7067 -0.2500 2.4547 14 6 2.2796 -0.8757 3.6489 15 1 3.2914 -1.2170 3.4304 16 6 2.3203 0.1436 4.7891 17 7 3.0861 1.3188 4.3663 18 6 3.2579 2.3700 5.2269 19 1 2.8291 2.3326 6.2175 20 6 3.9830 3.4838 4.8262 21 7 4.5059 3.5293 3.6191 22 14 4.2179 4.9175 6.0005 23 1 4.9250 4.4485 7.2191 24 1 5.0236 5.9739 5.3370 25 1 2.8923 5.4696 6.3789 26 6 1.4169 -2.0696 4.0627 27 6 -0.0054 -1.5939 4.4239 28 6 -0.4142 -2.4932 5.6179 29 6 0.9070 -2.6252 6.4155 30 6 1.9968 -2.7254 5.3283 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 1.2517 1.8449 -1.4560 35 1 1.5022 3.1273 -3.5696 36 1 2.5069 2.0321 -5.5319 37 1 3.0209 -1.5112 -3.4338 38 1 1.0929 0.4958 2.5448 39 1 1.3041 0.4445 5.0439 40 1 2.7957 -0.3054 5.6611 41 1 3.4714 1.3524 3.4768 42 1 5.0129 4.3074 3.3392 43 1 1.3728 -2.7969 3.2521 44 1 0.0073 -0.5458 4.7229 45 1 -0.6827 -1.7435 3.5831 46 1 -0.7532 -3.4683 5.2679 47 1 -1.1827 -2.0094 6.2207 48 1 0.8946 -3.5270 7.0275 49 1 1.0687 -1.7451 7.0378 50 1 2.2333 -3.7712 5.1320 51 1 2.8933 -2.1936 5.6470 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278268445.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:50 Heat of formation + Delta-G solvation = -54.281432 kcal Electronic energy + Delta-G solvation = -31282.169145 eV Core-core repulsion = 27180.968545 eV Total energy + Delta-G solvation = -4101.200600 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.96857 -41.12143 -39.75459 -38.74582 -36.74689 -35.33881 -33.73076 -33.19865 -32.62412 -31.18784 -30.61304 -29.52621 -27.82597 -26.09896 -25.17107 -24.66692 -23.97442 -23.18954 -21.73366 -21.19806 -20.10790 -19.53375 -19.24377 -18.55632 -17.77217 -17.39453 -17.33994 -16.81070 -16.55405 -16.31569 -16.14529 -15.53560 -15.46425 -15.26164 -15.09926 -15.00703 -14.76890 -14.41608 -14.32028 -14.04261 -13.98082 -13.51854 -13.33631 -13.14155 -13.06766 -12.72845 -12.68276 -12.63848 -12.35750 -12.19226 -12.15098 -11.90735 -11.86781 -11.84407 -11.78537 -11.37730 -11.21168 -10.94749 -10.86024 -10.71289 -10.60958 -10.04743 -9.48083 -8.98568 -7.93803 -5.22928 0.12739 0.21418 1.45412 1.49073 1.49654 1.51442 1.57081 2.47627 2.56709 2.78593 3.38786 3.42098 3.55123 3.60805 3.63176 3.73634 3.75110 3.81863 3.84817 3.91081 4.04990 4.13105 4.19858 4.29591 4.33156 4.51609 4.58378 4.60483 4.63106 4.70089 4.75542 4.75873 4.86015 4.87463 4.93968 5.00110 5.05983 5.09565 5.11624 5.14932 5.17734 5.30792 5.32386 5.42190 5.49224 5.51440 5.55363 5.61129 6.10920 6.26637 6.47695 6.93877 7.12919 7.34476 8.07324 8.31213 9.28974 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007310 B = 0.003559 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3829.412403 B = 7866.023670 C =10948.947944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.066 3.934 3 H 0.109 0.891 4 O -0.301 6.301 5 C 0.067 3.933 6 C -0.171 4.171 7 C -0.123 4.123 8 C 0.049 3.951 9 N -0.470 5.470 10 C 0.055 3.945 11 C 0.517 3.483 12 O -0.569 6.569 13 N -0.694 5.694 14 C 0.156 3.844 15 H 0.053 0.947 16 C 0.149 3.851 17 N -0.742 5.742 18 C -0.242 4.242 19 H 0.079 0.921 20 C -0.069 4.069 21 N -0.968 5.968 22 Si 0.969 3.031 23 H -0.282 1.282 24 H -0.300 1.300 25 H -0.274 1.274 26 C -0.089 4.089 27 C -0.119 4.119 28 C -0.118 4.118 29 C -0.120 4.120 30 C -0.123 4.123 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.158 0.842 35 H 0.172 0.828 36 H 0.187 0.813 37 H 0.162 0.838 38 H 0.412 0.588 39 H 0.050 0.950 40 H 0.036 0.964 41 H 0.372 0.628 42 H 0.250 0.750 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.075 0.925 49 H 0.062 0.938 50 H 0.066 0.934 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.477 -6.756 -6.976 17.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.006 3.994 3 H 0.126 0.874 4 O -0.213 6.213 5 C 0.019 3.981 6 C -0.197 4.197 7 C -0.142 4.142 8 C -0.108 4.108 9 N -0.179 5.179 10 C -0.103 4.103 11 C 0.303 3.697 12 O -0.448 6.448 13 N -0.345 5.345 14 C 0.051 3.949 15 H 0.071 0.929 16 C 0.022 3.978 17 N -0.385 5.385 18 C -0.374 4.374 19 H 0.097 0.903 20 C -0.262 4.262 21 N -0.619 5.619 22 Si 0.798 3.202 23 H -0.209 1.209 24 H -0.226 1.226 25 H -0.199 1.199 26 C -0.110 4.110 27 C -0.157 4.157 28 C -0.155 4.155 29 C -0.158 4.158 30 C -0.161 4.161 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.176 0.824 35 H 0.190 0.810 36 H 0.204 0.796 37 H 0.179 0.821 38 H 0.249 0.751 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.204 0.796 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.095 0.905 48 H 0.094 0.906 49 H 0.081 0.919 50 H 0.085 0.915 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.579 -7.960 -7.567 17.465 hybrid contribution 0.399 1.612 0.993 1.935 sum -13.180 -6.348 -6.574 16.038 Atomic orbital electron populations 1.22321 0.89665 1.04654 1.05639 1.22364 0.97768 0.96840 0.82407 0.87369 1.86174 1.81459 1.37334 1.16348 1.20382 0.97628 0.92198 0.87888 1.22121 1.02975 0.93188 1.01438 1.22408 0.97430 1.02405 0.91937 1.23263 0.96519 0.90669 1.00336 1.67751 1.15734 1.08776 1.25684 1.22295 0.99812 1.01387 0.86804 1.20449 0.79948 0.84207 0.85091 1.90694 1.39444 1.27500 1.87115 1.45703 1.48155 1.36424 1.04257 1.21110 0.96465 0.93200 0.84115 0.92911 1.21191 0.95764 0.86371 0.94443 1.42523 1.63628 1.16522 1.15857 1.19569 1.26628 0.95015 0.96172 0.90323 1.25479 1.01221 1.01254 0.98238 1.69811 1.41411 1.30857 1.19784 0.85284 0.77736 0.79092 0.78055 1.20888 1.22616 1.19948 1.22003 0.95852 0.95233 0.97864 1.22515 0.94186 1.00336 0.98618 1.22473 0.97090 0.99776 0.96158 1.22336 0.94327 1.02058 0.97065 1.22222 0.98955 1.00404 0.94502 0.88008 0.89227 0.90969 0.82415 0.81009 0.79593 0.82068 0.75115 0.93275 0.94593 0.79579 0.94166 0.91981 0.90911 0.91206 0.91072 0.90515 0.90634 0.91887 0.91482 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 9.10 71.98 0.66 -2.21 16 2 C 0.07 1.70 2.65 29.85 0.08 1.78 16 3 H 0.11 2.65 6.30 -2.39 -0.02 2.64 16 4 O -0.30 -9.02 9.34 -73.51 -0.69 -9.70 16 5 C 0.07 1.76 6.63 22.60 0.15 1.91 16 6 C -0.17 -3.60 8.37 22.56 0.19 -3.41 16 7 C -0.12 -2.11 10.11 22.34 0.23 -1.88 16 8 C 0.05 0.95 11.18 84.69 0.95 1.89 16 9 N -0.47 -11.90 10.36 -195.44 -2.02 -13.92 16 10 C 0.05 1.46 11.14 84.80 0.94 2.40 16 11 C 0.52 16.88 7.20 87.66 0.63 17.51 16 12 O -0.57 -23.54 16.19 16.00 0.26 -23.28 16 13 N -0.69 -20.52 4.19 -442.55 -1.85 -22.38 16 14 C 0.16 5.04 1.79 44.99 0.08 5.12 16 15 H 0.05 2.09 7.61 -2.39 -0.02 2.07 16 16 C 0.15 5.34 5.27 86.38 0.46 5.79 16 17 N -0.74 -35.02 5.45 -343.45 -1.87 -36.89 16 18 C -0.24 -12.68 9.99 84.03 0.84 -11.84 16 19 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 20 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 21 N -0.97 -57.12 13.06 21.65 0.28 -56.84 16 22 Si 0.97 44.23 29.55 68.60 2.03 46.25 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 26 C -0.09 -2.34 2.96 -10.07 -0.03 -2.37 16 27 C -0.12 -2.50 5.87 31.69 0.19 -2.32 16 28 C -0.12 -2.10 6.91 31.91 0.22 -1.88 16 29 C -0.12 -2.40 6.83 31.67 0.22 -2.18 16 30 C -0.12 -2.98 5.94 31.32 0.19 -2.79 16 31 H 0.10 1.36 7.46 -2.39 -0.02 1.34 16 32 H 0.09 1.27 7.03 -2.38 -0.02 1.26 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.16 2.73 5.63 -2.91 -0.02 2.71 16 35 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 36 H 0.19 2.29 8.06 -2.91 -0.02 2.27 16 37 H 0.16 4.07 8.06 -2.91 -0.02 4.05 16 38 H 0.41 10.65 7.91 -92.70 -0.73 9.92 16 39 H 0.05 1.63 5.88 -2.39 -0.01 1.62 16 40 H 0.04 1.33 6.53 -2.39 -0.02 1.32 16 41 H 0.37 19.25 7.40 -92.71 -0.69 18.57 16 42 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 43 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.07 1.61 5.58 -2.39 -0.01 1.60 16 45 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 47 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 51 H 0.06 1.56 6.28 -2.39 -0.02 1.55 16 Total: -1.00 -71.98 405.95 2.12 -69.86 By element: Atomic # 1 Polarization: 45.16 SS G_CDS: -0.46 Total: 44.70 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 6.44 Total: 2.19 kcal Atomic # 7 Polarization: -124.56 SS G_CDS: -5.47 Total: -130.02 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.43 Total: -32.99 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -71.98 2.12 -69.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278268445.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.579 kcal (2) G-P(sol) polarization free energy of solvation -71.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds