Wall clock time and date at job start Wed Apr 1 2020 05:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46989 * 2 1 4 4 O 1.42892 * 109.47337 * 239.99237 * 2 1 3 5 5 C 1.35912 * 117.00275 * 83.59897 * 4 2 1 6 6 C 1.39144 * 120.46886 * 3.69928 * 5 4 2 7 7 C 1.38535 * 118.37341 * 180.02562 * 6 5 4 8 8 C 1.38255 * 119.22268 * 359.97438 * 7 6 5 9 9 N 1.31854 * 120.88450 * 0.02562 * 8 7 6 10 10 C 1.31843 * 121.77960 * 359.70602 * 9 8 7 11 11 C 1.50704 * 109.46792 * 119.99280 * 2 1 3 12 12 O 1.21273 * 119.99940 * 115.00207 * 11 2 1 13 13 N 1.34780 * 120.00004 * 294.99809 * 11 2 1 14 14 C 1.46501 * 119.99997 * 184.82457 * 13 11 2 15 15 H 1.09000 * 109.46900 * 355.24991 * 14 13 11 16 16 C 1.53005 * 109.46930 * 235.25519 * 14 13 11 17 17 N 1.46498 * 109.47308 * 54.99992 * 16 14 13 18 18 C 1.36936 * 119.99609 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00144 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99753 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00364 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00321 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46793 * 59.99948 * 22 20 18 24 24 H 1.48493 * 109.47485 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47003 * 300.00563 * 22 20 18 26 26 C 1.52999 * 109.47006 * 115.25239 * 14 13 11 27 27 C 1.54266 * 110.03027 * 55.53659 * 26 14 13 28 28 C 1.54891 * 104.19493 * 217.10602 * 27 26 14 29 29 C 1.54892 * 102.74834 * 37.93913 * 28 27 26 30 30 C 1.53868 * 110.03292 * 298.36725 * 26 14 13 31 31 H 1.09004 * 109.47248 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47528 * 300.00835 * 1 2 3 33 33 H 1.08999 * 109.47250 * 60.00916 * 1 2 3 34 34 H 1.07997 * 120.81277 * 359.97438 * 6 5 4 35 35 H 1.08004 * 120.39197 * 180.02562 * 7 6 5 36 36 H 1.07997 * 119.56314 * 179.97438 * 8 7 6 37 37 H 1.07999 * 119.65652 * 180.28985 * 10 9 8 38 38 H 0.97003 * 119.99892 * 4.83001 * 13 11 2 39 39 H 1.09007 * 109.46602 * 175.00124 * 16 14 13 40 40 H 1.09001 * 109.47022 * 294.99727 * 16 14 13 41 41 H 0.97002 * 119.99763 * 0.02562 * 17 16 14 42 42 H 0.96993 * 120.00245 * 179.97438 * 21 20 18 43 43 H 1.08999 * 110.01692 * 176.97696 * 26 14 13 44 44 H 1.09001 * 110.48746 * 335.77666 * 27 26 14 45 45 H 1.08993 * 110.49021 * 98.42651 * 27 26 14 46 46 H 1.08998 * 110.75570 * 279.62671 * 28 27 26 47 47 H 1.08997 * 110.91654 * 156.32871 * 28 27 26 48 48 H 1.09003 * 110.48403 * 203.37846 * 29 28 27 49 49 H 1.09001 * 110.59441 * 80.79513 * 29 28 27 50 50 H 1.08996 * 110.03688 * 238.56857 * 30 26 14 51 51 H 1.09004 * 110.03643 * 0.02562 * 30 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1666 5 6 2.0848 0.0549 -2.3112 6 6 1.7854 1.4137 -2.3045 7 6 1.8791 2.1144 -3.4959 8 6 2.2645 1.4463 -4.6434 9 7 2.5413 0.1574 -4.6155 10 6 2.4694 -0.5442 -3.5016 11 6 2.0323 -0.7103 1.2306 12 8 2.6529 -1.7465 1.1218 13 7 1.7918 -0.1939 2.4521 14 6 2.3690 -0.8257 3.6411 15 1 2.8872 -1.7399 3.3514 16 6 1.2529 -1.1642 4.6315 17 7 0.2417 -1.9882 3.9647 18 6 -0.8587 -2.4161 4.6584 19 1 -0.9814 -2.1458 5.6967 20 6 -1.8171 -3.1965 4.0265 21 7 -1.6680 -3.5256 2.7608 22 14 -3.3187 -3.7797 4.9723 23 1 -4.0809 -2.6042 5.4647 24 1 -4.1828 -4.5913 4.0780 25 1 -2.8859 -4.6077 6.1266 26 6 3.3606 0.1359 4.2991 27 6 2.6665 1.4773 4.6132 28 6 3.7553 2.5430 4.3338 29 6 4.4759 1.9761 3.0854 30 6 4.5110 0.4530 3.3278 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5137 -0.8900 34 1 1.4865 1.9098 -1.3930 35 1 1.6546 3.1704 -3.5279 36 1 2.3389 1.9870 -5.5752 37 1 2.7083 -1.5973 -3.5170 38 1 1.2365 0.5961 2.5439 39 1 1.6704 -1.7133 5.4755 40 1 0.7928 -0.2430 4.9891 41 1 0.3521 -2.2314 3.0322 42 1 -2.3375 -4.0712 2.3194 43 1 3.7556 -0.3043 5.2147 44 1 1.8095 1.6264 3.9564 45 1 2.3581 1.5119 5.6580 46 1 4.4440 2.6213 5.1750 47 1 3.3050 3.5109 4.1138 48 1 5.4880 2.3748 3.0153 49 1 3.9130 2.2056 2.1806 50 1 5.4644 0.1676 3.7722 51 1 4.3627 -0.0778 2.3873 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278268450.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:02 Heat of formation + Delta-G solvation = -31.999984 kcal Electronic energy + Delta-G solvation = -31770.375557 eV Core-core repulsion = 27670.141154 eV Total energy + Delta-G solvation = -4100.234403 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.96789 -40.02984 -38.65107 -37.52609 -35.24585 -33.60281 -32.52228 -32.31254 -30.98461 -30.13380 -29.50240 -28.74371 -26.32224 -24.98573 -23.93868 -23.42084 -22.81657 -21.56639 -20.76244 -20.04793 -19.28540 -18.58647 -17.55854 -17.16329 -16.86464 -16.27915 -15.86460 -15.81739 -15.62017 -14.99144 -14.58018 -14.54601 -14.24183 -14.01627 -13.85616 -13.50592 -13.39804 -13.29756 -13.10822 -12.99570 -12.80088 -12.30710 -12.23892 -12.09909 -11.74130 -11.70624 -11.25678 -11.16920 -11.10594 -11.06017 -10.82780 -10.70116 -10.65773 -10.53001 -10.35317 -10.08310 -9.99429 -9.75877 -9.72508 -9.49249 -8.88595 -8.69103 -8.54247 -6.92241 -5.75008 -3.04737 0.95400 1.07110 2.57752 2.82458 3.42531 3.47511 3.48772 3.59332 3.67558 4.32760 4.41237 4.51185 4.54463 4.59787 4.62382 4.65485 4.73671 4.80066 4.87464 4.93550 5.04806 5.21874 5.37985 5.44193 5.49675 5.55645 5.58178 5.61156 5.62303 5.63163 5.67864 5.79072 5.83245 5.87114 5.88300 5.90651 6.01780 6.09856 6.20296 6.22047 6.25792 6.27665 6.30890 6.42755 6.46658 6.66064 6.89791 7.08756 7.67968 7.72330 7.79732 8.42424 8.46259 9.54091 10.11879 10.47184 11.46703 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008006 B = 0.003700 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3496.426533 B = 7565.248775 C =10238.857015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.068 3.932 3 H 0.092 0.908 4 O -0.273 6.273 5 C 0.091 3.909 6 C -0.173 4.173 7 C -0.130 4.130 8 C 0.049 3.951 9 N -0.447 5.447 10 C 0.074 3.926 11 C 0.524 3.476 12 O -0.515 6.515 13 N -0.701 5.701 14 C 0.139 3.861 15 H 0.101 0.899 16 C 0.143 3.857 17 N -0.728 5.728 18 C -0.243 4.243 19 H 0.068 0.932 20 C -0.011 4.011 21 N -0.928 5.928 22 Si 0.905 3.095 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.099 4.099 27 C -0.117 4.117 28 C -0.124 4.124 29 C -0.121 4.121 30 C -0.120 4.120 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.156 0.844 37 H 0.166 0.834 38 H 0.397 0.603 39 H 0.028 0.972 40 H 0.023 0.977 41 H 0.387 0.613 42 H 0.255 0.745 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.059 0.941 49 H 0.059 0.941 50 H 0.060 0.940 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.429 17.360 -6.378 21.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.008 3.992 3 H 0.109 0.891 4 O -0.184 6.184 5 C 0.042 3.958 6 C -0.199 4.199 7 C -0.150 4.150 8 C -0.107 4.107 9 N -0.156 5.156 10 C -0.084 4.084 11 C 0.308 3.692 12 O -0.389 6.389 13 N -0.354 5.354 14 C 0.035 3.965 15 H 0.119 0.881 16 C 0.015 3.985 17 N -0.373 5.373 18 C -0.374 4.374 19 H 0.086 0.914 20 C -0.207 4.207 21 N -0.576 5.576 22 Si 0.736 3.264 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.119 4.119 27 C -0.154 4.154 28 C -0.162 4.162 29 C -0.159 4.159 30 C -0.157 4.157 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.173 0.827 37 H 0.183 0.817 38 H 0.233 0.767 39 H 0.046 0.954 40 H 0.041 0.959 41 H 0.221 0.779 42 H 0.065 0.935 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.079 0.921 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.068 15.924 -7.063 20.639 hybrid contribution -1.576 0.615 1.172 2.058 sum 9.492 16.539 -5.892 19.958 Atomic orbital electron populations 1.22306 0.91716 1.05916 1.03299 1.22299 0.96394 0.96375 0.84169 0.89073 1.86292 1.79952 1.37201 1.14955 1.20288 0.96266 0.90941 0.88296 1.21767 1.04497 0.93517 1.00123 1.21974 0.98981 1.01231 0.92791 1.22643 0.99000 0.90631 0.98465 1.67742 1.12275 1.08195 1.27368 1.22272 0.99967 1.01004 0.85198 1.19769 0.80057 0.85305 0.84039 1.90749 1.40102 1.21928 1.86104 1.45648 1.52524 1.32066 1.05184 1.21382 0.94376 0.96082 0.84689 0.88072 1.21011 0.89336 0.94595 0.93585 1.42297 1.21979 1.60636 1.12384 1.19144 0.97729 1.25963 0.94581 0.91376 1.24733 0.99034 1.00843 0.96102 1.69665 1.36155 1.41924 1.09839 0.86307 0.82945 0.78363 0.78756 1.21385 1.21722 1.21324 1.22122 0.95176 0.95896 0.98670 1.22400 0.97715 0.93806 1.01520 1.22493 0.97799 0.98074 0.97791 1.22318 0.99940 0.95669 0.97930 1.22170 0.97944 0.95812 0.99809 0.89296 0.89886 0.91440 0.84152 0.84584 0.82663 0.81722 0.76740 0.95416 0.95887 0.77913 0.93490 0.89875 0.91609 0.91378 0.91713 0.91960 0.92231 0.92217 0.92100 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 9.24 37.16 0.34 -1.96 16 2 C 0.07 0.90 2.66 -27.88 -0.07 0.83 16 3 H 0.09 0.90 6.00 -51.93 -0.31 0.59 16 4 O -0.27 -4.17 9.36 -39.33 -0.37 -4.54 16 5 C 0.09 1.17 6.57 -39.07 -0.26 0.91 16 6 C -0.17 -1.76 8.49 -39.14 -0.33 -2.09 16 7 C -0.13 -1.13 10.11 -39.47 -0.40 -1.53 16 8 C 0.05 0.48 11.18 -17.54 -0.20 0.29 16 9 N -0.45 -5.56 10.36 -13.13 -0.14 -5.70 16 10 C 0.07 0.96 11.14 -17.38 -0.19 0.77 16 11 C 0.52 8.64 6.35 -10.98 -0.07 8.57 16 12 O -0.51 -10.82 15.81 -14.30 -0.23 -11.05 16 13 N -0.70 -10.11 3.63 -53.80 -0.20 -10.31 16 14 C 0.14 2.17 2.04 -67.93 -0.14 2.03 16 15 H 0.10 1.88 6.91 -51.93 -0.36 1.52 16 16 C 0.14 2.70 5.85 -4.04 -0.02 2.67 16 17 N -0.73 -17.95 5.43 -59.91 -0.33 -18.28 16 18 C -0.24 -6.67 9.99 -15.06 -0.15 -6.83 16 19 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 21 N -0.93 -27.96 13.06 55.49 0.72 -27.24 16 22 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C -0.10 -1.18 2.80 -89.51 -0.25 -1.43 16 27 C -0.12 -1.20 5.18 -25.07 -0.13 -1.33 16 28 C -0.12 -1.09 6.91 -24.74 -0.17 -1.26 16 29 C -0.12 -1.14 6.83 -25.07 -0.17 -1.31 16 30 C -0.12 -1.36 6.21 -25.62 -0.16 -1.52 16 31 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.08 1.00 7.78 -51.93 -0.40 0.60 16 33 H 0.07 0.75 7.44 -51.93 -0.39 0.37 16 34 H 0.14 1.14 5.88 -52.49 -0.31 0.83 16 35 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 36 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.17 1.98 8.06 -52.49 -0.42 1.56 16 38 H 0.40 4.87 6.77 -40.82 -0.28 4.60 16 39 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 40 H 0.02 0.42 7.23 -51.93 -0.38 0.04 16 41 H 0.39 10.35 7.31 -40.82 -0.30 10.05 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 0.68 6.05 -51.93 -0.31 0.36 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.07 0.91 6.69 -51.93 -0.35 0.56 16 LS Contribution 407.19 15.07 6.14 6.14 Total: -1.00 -34.07 407.19 -9.88 -43.95 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -8.00 Total: 13.35 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -2.47 Total: -3.58 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: 0.07 Total: -61.52 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.59 Total: -15.59 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.07 -9.88 -43.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278268450.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.953 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds