Wall clock time and date at job start Wed Apr 1 2020 05:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46989 * 2 1 4 4 O 1.42892 * 109.47337 * 239.99237 * 2 1 3 5 5 C 1.35912 * 117.00275 * 83.59897 * 4 2 1 6 6 C 1.39144 * 120.46886 * 3.69928 * 5 4 2 7 7 C 1.38535 * 118.37341 * 180.02562 * 6 5 4 8 8 C 1.38255 * 119.22268 * 359.97438 * 7 6 5 9 9 N 1.31854 * 120.88450 * 0.02562 * 8 7 6 10 10 C 1.31843 * 121.77960 * 359.70602 * 9 8 7 11 11 C 1.50704 * 109.46792 * 119.99280 * 2 1 3 12 12 O 1.21273 * 119.99940 * 115.00207 * 11 2 1 13 13 N 1.34780 * 120.00004 * 294.99809 * 11 2 1 14 14 C 1.46501 * 119.99997 * 184.82457 * 13 11 2 15 15 H 1.09000 * 109.46900 * 355.24991 * 14 13 11 16 16 C 1.53005 * 109.46930 * 235.25519 * 14 13 11 17 17 N 1.46498 * 109.47308 * 54.99992 * 16 14 13 18 18 C 1.36936 * 119.99609 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00144 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99753 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00364 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00321 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46793 * 59.99948 * 22 20 18 24 24 H 1.48493 * 109.47485 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47003 * 300.00563 * 22 20 18 26 26 C 1.52999 * 109.47006 * 115.25239 * 14 13 11 27 27 C 1.54266 * 110.03027 * 55.53659 * 26 14 13 28 28 C 1.54891 * 104.19493 * 217.10602 * 27 26 14 29 29 C 1.54892 * 102.74834 * 37.93913 * 28 27 26 30 30 C 1.53868 * 110.03292 * 298.36725 * 26 14 13 31 31 H 1.09004 * 109.47248 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47528 * 300.00835 * 1 2 3 33 33 H 1.08999 * 109.47250 * 60.00916 * 1 2 3 34 34 H 1.07997 * 120.81277 * 359.97438 * 6 5 4 35 35 H 1.08004 * 120.39197 * 180.02562 * 7 6 5 36 36 H 1.07997 * 119.56314 * 179.97438 * 8 7 6 37 37 H 1.07999 * 119.65652 * 180.28985 * 10 9 8 38 38 H 0.97003 * 119.99892 * 4.83001 * 13 11 2 39 39 H 1.09007 * 109.46602 * 175.00124 * 16 14 13 40 40 H 1.09001 * 109.47022 * 294.99727 * 16 14 13 41 41 H 0.97002 * 119.99763 * 0.02562 * 17 16 14 42 42 H 0.96993 * 120.00245 * 179.97438 * 21 20 18 43 43 H 1.08999 * 110.01692 * 176.97696 * 26 14 13 44 44 H 1.09001 * 110.48746 * 335.77666 * 27 26 14 45 45 H 1.08993 * 110.49021 * 98.42651 * 27 26 14 46 46 H 1.08998 * 110.75570 * 279.62671 * 28 27 26 47 47 H 1.08997 * 110.91654 * 156.32871 * 28 27 26 48 48 H 1.09003 * 110.48403 * 203.37846 * 29 28 27 49 49 H 1.09001 * 110.59441 * 80.79513 * 29 28 27 50 50 H 1.08996 * 110.03688 * 238.56857 * 30 26 14 51 51 H 1.09004 * 110.03643 * 0.02562 * 30 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1666 5 6 2.0848 0.0549 -2.3112 6 6 1.7854 1.4137 -2.3045 7 6 1.8791 2.1144 -3.4959 8 6 2.2645 1.4463 -4.6434 9 7 2.5413 0.1574 -4.6155 10 6 2.4694 -0.5442 -3.5016 11 6 2.0323 -0.7103 1.2306 12 8 2.6529 -1.7465 1.1218 13 7 1.7918 -0.1939 2.4521 14 6 2.3690 -0.8257 3.6411 15 1 2.8872 -1.7399 3.3514 16 6 1.2529 -1.1642 4.6315 17 7 0.2417 -1.9882 3.9647 18 6 -0.8587 -2.4161 4.6584 19 1 -0.9814 -2.1458 5.6967 20 6 -1.8171 -3.1965 4.0265 21 7 -1.6680 -3.5256 2.7608 22 14 -3.3187 -3.7797 4.9723 23 1 -4.0809 -2.6042 5.4647 24 1 -4.1828 -4.5913 4.0780 25 1 -2.8859 -4.6077 6.1266 26 6 3.3606 0.1359 4.2991 27 6 2.6665 1.4773 4.6132 28 6 3.7553 2.5430 4.3338 29 6 4.4759 1.9761 3.0854 30 6 4.5110 0.4530 3.3278 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5137 -0.8900 34 1 1.4865 1.9098 -1.3930 35 1 1.6546 3.1704 -3.5279 36 1 2.3389 1.9870 -5.5752 37 1 2.7083 -1.5973 -3.5170 38 1 1.2365 0.5961 2.5439 39 1 1.6704 -1.7133 5.4755 40 1 0.7928 -0.2430 4.9891 41 1 0.3521 -2.2314 3.0322 42 1 -2.3375 -4.0712 2.3194 43 1 3.7556 -0.3043 5.2147 44 1 1.8095 1.6264 3.9564 45 1 2.3581 1.5119 5.6580 46 1 4.4440 2.6213 5.1750 47 1 3.3050 3.5109 4.1138 48 1 5.4880 2.3748 3.0153 49 1 3.9130 2.2056 2.1806 50 1 5.4644 0.1676 3.7722 51 1 4.3627 -0.0778 2.3873 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278268450.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:01 Heat of formation + Delta-G solvation = -53.841332 kcal Electronic energy + Delta-G solvation = -31771.322669 eV Core-core repulsion = 27670.141154 eV Total energy + Delta-G solvation = -4101.181515 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.97577 -41.14062 -39.63838 -38.63238 -36.78431 -35.21043 -33.76720 -33.18111 -32.59921 -31.20573 -30.65085 -29.59000 -27.78270 -26.12276 -25.18604 -24.66143 -23.92273 -22.85173 -21.85985 -21.01967 -20.39244 -19.53044 -19.22259 -18.56749 -17.72151 -17.37602 -17.04558 -16.91873 -16.57765 -16.50934 -16.00900 -15.43001 -15.32084 -15.28790 -15.05767 -14.96132 -14.75666 -14.38776 -14.14326 -13.99723 -13.94784 -13.71494 -13.38124 -13.13709 -13.08254 -12.97362 -12.72416 -12.69528 -12.27112 -12.22613 -12.01036 -11.89881 -11.83885 -11.66478 -11.54945 -11.42299 -11.37025 -10.98642 -10.84025 -10.70474 -10.57525 -10.00519 -9.46024 -8.97978 -7.91873 -5.21641 0.14929 0.24769 1.46127 1.48251 1.49608 1.55397 1.56436 2.51087 2.56429 2.80839 3.40621 3.43588 3.54480 3.57273 3.62094 3.73602 3.76436 3.80683 3.83999 3.93264 4.15802 4.16192 4.24720 4.31904 4.39206 4.55427 4.57755 4.59073 4.62179 4.71030 4.77140 4.78643 4.88094 4.90239 4.92195 5.03536 5.07491 5.09183 5.13579 5.14629 5.18520 5.32108 5.38842 5.44781 5.47046 5.51057 5.55737 5.61027 6.15385 6.27132 6.51978 6.96860 7.22032 7.34575 8.11191 8.33799 9.30306 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008006 B = 0.003700 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3496.426533 B = 7565.248775 C =10238.857015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.075 3.925 3 H 0.136 0.864 4 O -0.307 6.307 5 C 0.067 3.933 6 C -0.168 4.168 7 C -0.117 4.117 8 C 0.047 3.953 9 N -0.471 5.471 10 C 0.048 3.952 11 C 0.518 3.482 12 O -0.572 6.572 13 N -0.687 5.687 14 C 0.149 3.851 15 H 0.063 0.937 16 C 0.142 3.858 17 N -0.742 5.742 18 C -0.243 4.243 19 H 0.078 0.922 20 C -0.074 4.074 21 N -0.967 5.967 22 Si 0.971 3.029 23 H -0.273 1.273 24 H -0.300 1.300 25 H -0.282 1.282 26 C -0.091 4.091 27 C -0.116 4.116 28 C -0.115 4.115 29 C -0.117 4.117 30 C -0.118 4.118 31 H 0.040 0.960 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.166 0.834 35 H 0.179 0.821 36 H 0.187 0.813 37 H 0.153 0.847 38 H 0.411 0.589 39 H 0.026 0.974 40 H 0.045 0.955 41 H 0.372 0.628 42 H 0.248 0.752 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.070 0.930 49 H 0.063 0.937 50 H 0.065 0.935 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.173 21.740 -5.594 24.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.016 3.984 3 H 0.153 0.847 4 O -0.219 6.219 5 C 0.019 3.981 6 C -0.195 4.195 7 C -0.136 4.136 8 C -0.111 4.111 9 N -0.181 5.181 10 C -0.109 4.109 11 C 0.303 3.697 12 O -0.450 6.450 13 N -0.340 5.340 14 C 0.044 3.956 15 H 0.082 0.918 16 C 0.015 3.985 17 N -0.384 5.384 18 C -0.375 4.375 19 H 0.096 0.904 20 C -0.266 4.266 21 N -0.617 5.617 22 Si 0.801 3.199 23 H -0.199 1.199 24 H -0.227 1.227 25 H -0.208 1.208 26 C -0.111 4.111 27 C -0.154 4.154 28 C -0.152 4.152 29 C -0.155 4.155 30 C -0.156 4.156 31 H 0.059 0.941 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.184 0.816 35 H 0.197 0.803 36 H 0.204 0.796 37 H 0.170 0.830 38 H 0.249 0.751 39 H 0.044 0.956 40 H 0.063 0.937 41 H 0.204 0.796 42 H 0.056 0.944 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.098 0.902 48 H 0.089 0.911 49 H 0.082 0.918 50 H 0.084 0.916 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.821 20.358 -6.223 23.881 hybrid contribution -1.422 -0.694 0.901 1.821 sum 9.398 19.665 -5.323 22.436 Atomic orbital electron populations 1.22238 0.91612 1.03327 1.05175 1.22309 0.96126 0.97634 0.82367 0.84728 1.86252 1.80726 1.38902 1.16046 1.20422 0.98011 0.92334 0.87330 1.22098 1.03338 0.92134 1.01880 1.22427 0.96754 1.03000 0.91396 1.23312 0.97514 0.89829 1.00417 1.67742 1.13345 1.09808 1.27157 1.22209 1.01578 1.01072 0.86034 1.20454 0.79087 0.84718 0.85404 1.90718 1.42793 1.24524 1.86957 1.45519 1.52074 1.31931 1.04450 1.21157 0.93773 0.96121 0.84531 0.91838 1.21208 0.89060 0.94281 0.93936 1.42516 1.22652 1.61404 1.11872 1.19590 0.98079 1.24810 0.95012 0.90371 1.25545 1.02232 1.01869 0.96977 1.69857 1.37025 1.43246 1.11588 0.85247 0.79456 0.78011 0.77219 1.19870 1.22676 1.20817 1.22069 0.94487 0.96068 0.98500 1.22416 0.98155 0.92906 1.01887 1.22453 0.97152 0.98090 0.97508 1.22313 1.00929 0.93649 0.98588 1.22132 0.97801 0.97461 0.98228 0.94054 0.88559 0.88879 0.81648 0.80344 0.79585 0.82952 0.75104 0.95608 0.93687 0.79617 0.94351 0.89430 0.91491 0.90812 0.90960 0.90205 0.91102 0.91839 0.91629 0.94291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.37 9.24 71.98 0.67 -3.70 16 2 C 0.08 2.00 2.66 29.85 0.08 2.08 16 3 H 0.14 2.33 6.00 -2.39 -0.01 2.31 16 4 O -0.31 -9.85 9.36 -73.57 -0.69 -10.54 16 5 C 0.07 1.73 6.57 22.60 0.15 1.88 16 6 C -0.17 -2.97 8.49 22.56 0.19 -2.78 16 7 C -0.12 -1.57 10.11 22.34 0.23 -1.35 16 8 C 0.05 0.80 11.18 84.69 0.95 1.74 16 9 N -0.47 -11.65 10.36 -195.44 -2.02 -13.67 16 10 C 0.05 1.32 11.14 84.80 0.94 2.26 16 11 C 0.52 17.82 6.35 87.66 0.56 18.37 16 12 O -0.57 -26.02 15.81 15.98 0.25 -25.77 16 13 N -0.69 -19.95 3.63 -442.52 -1.61 -21.56 16 14 C 0.15 4.75 2.04 44.99 0.09 4.84 16 15 H 0.06 2.54 6.91 -2.39 -0.02 2.52 16 16 C 0.14 5.35 5.85 86.38 0.51 5.85 16 17 N -0.74 -37.32 5.43 -343.44 -1.87 -39.19 16 18 C -0.24 -13.41 9.99 84.03 0.84 -12.57 16 19 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 20 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 21 N -0.97 -60.30 13.06 21.65 0.28 -60.02 16 22 Si 0.97 46.25 29.55 68.60 2.03 48.28 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 26 C -0.09 -2.09 2.80 -10.07 -0.03 -2.11 16 27 C -0.12 -2.05 5.18 31.67 0.16 -1.88 16 28 C -0.11 -1.58 6.91 31.89 0.22 -1.36 16 29 C -0.12 -1.89 6.83 31.67 0.22 -1.67 16 30 C -0.12 -2.60 6.21 31.32 0.19 -2.40 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.10 2.21 7.78 -2.39 -0.02 2.19 16 33 H 0.09 1.93 7.44 -2.39 -0.02 1.92 16 34 H 0.17 1.96 5.88 -2.91 -0.02 1.95 16 35 H 0.18 0.92 8.06 -2.91 -0.02 0.89 16 36 H 0.19 1.88 8.06 -2.91 -0.02 1.85 16 37 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 38 H 0.41 9.54 6.77 -92.71 -0.63 8.91 16 39 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.05 1.53 7.23 -2.39 -0.02 1.52 16 41 H 0.37 20.81 7.31 -92.71 -0.68 20.13 16 42 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 43 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.07 1.17 6.05 -2.39 -0.01 1.16 16 45 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 46 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.04 1.08 6.69 -2.38 -0.02 1.07 16 Total: -1.00 -79.56 407.19 2.45 -77.11 By element: Atomic # 1 Polarization: 42.29 SS G_CDS: -0.36 Total: 41.93 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 6.43 Total: 3.41 kcal Atomic # 7 Polarization: -129.22 SS G_CDS: -5.21 Total: -134.43 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -0.44 Total: -36.31 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -79.56 2.45 -77.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278268450.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.269 kcal (2) G-P(sol) polarization free energy of solvation -79.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds