Wall clock time and date at job start Wed Apr 1 2020 05:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21287 * 120.00170 * 2 1 4 4 N 1.34773 * 120.00021 * 180.02562 * 2 1 3 5 5 C 1.46504 * 120.00556 * 179.97438 * 4 2 1 6 6 H 1.09002 * 109.46910 * 324.99996 * 5 4 2 7 7 C 1.53002 * 109.46876 * 84.99652 * 5 4 2 8 8 C 1.50701 * 109.47396 * 205.00034 * 5 4 2 9 9 O 1.21280 * 119.99781 * 359.97438 * 8 5 4 10 10 N 1.34771 * 119.99622 * 180.02562 * 8 5 4 11 11 C 1.46505 * 119.99622 * 179.97438 * 10 8 5 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.46906 * 55.00224 * 13 12 11 15 15 C 1.52998 * 109.47705 * 174.99884 * 13 12 11 16 16 C 1.50699 * 109.47757 * 185.00168 * 15 13 12 17 17 C 1.38240 * 119.99810 * 269.73065 * 16 15 13 18 18 C 1.38236 * 119.99504 * 179.76313 * 17 16 15 19 19 C 1.38227 * 120.00314 * 0.50576 * 18 17 16 20 20 C 1.38242 * 120.00179 * 359.74649 * 19 18 17 21 21 C 1.38231 * 119.99529 * 359.97438 * 20 19 18 22 22 N 1.46497 * 109.47408 * 295.00294 * 13 12 11 23 23 C 1.36941 * 119.99688 * 299.99939 * 22 13 12 24 24 H 1.07999 * 120.00228 * 359.97438 * 23 22 13 25 25 C 1.38810 * 119.99891 * 179.97438 * 23 22 13 26 26 N 1.31626 * 120.00242 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99976 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.46818 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.47056 * 120.00071 * 27 25 23 30 30 H 1.48502 * 109.47094 * 239.99784 * 27 25 23 31 31 H 1.09000 * 109.46806 * 270.00387 * 1 2 3 32 32 H 1.08997 * 109.46947 * 29.99469 * 1 2 3 33 33 H 1.08995 * 109.47253 * 150.00225 * 1 2 3 34 34 H 0.97007 * 119.99952 * 359.97438 * 4 2 1 35 35 H 1.08992 * 109.47063 * 60.00439 * 7 5 4 36 36 H 1.09004 * 109.46733 * 180.02562 * 7 5 4 37 37 H 1.08996 * 109.47407 * 300.00043 * 7 5 4 38 38 H 0.96996 * 120.00772 * 359.97438 * 10 8 5 39 39 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 40 40 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 41 41 H 1.09002 * 109.47153 * 300.00008 * 12 11 10 42 42 H 1.08998 * 109.47533 * 59.99637 * 12 11 10 43 43 H 1.08998 * 109.47140 * 305.00658 * 15 13 12 44 44 H 1.09001 * 109.46898 * 64.99635 * 15 13 12 45 45 H 1.07995 * 119.99950 * 359.97438 * 17 16 15 46 46 H 1.08004 * 119.99700 * 180.22934 * 18 17 16 47 47 H 1.07998 * 120.00238 * 179.72643 * 19 18 17 48 48 H 1.07993 * 120.00409 * 179.97438 * 20 19 18 49 49 H 1.08007 * 119.99994 * 179.97438 * 21 20 19 50 50 H 0.96998 * 120.00817 * 119.99169 * 22 13 12 51 51 H 0.96994 * 119.99780 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 1 4.0090 -0.3254 -0.5905 7 6 4.1564 -1.0419 1.4358 8 6 4.1479 -2.4549 -0.6020 9 8 3.3596 -3.2904 -0.9911 10 7 5.4729 -2.6783 -0.7061 11 6 5.9610 -3.9302 -1.2898 12 6 7.4909 -3.9303 -1.2905 13 6 8.0007 -5.2380 -1.8995 14 1 7.5657 -5.3713 -2.8900 15 6 9.5254 -5.1866 -2.0150 16 6 10.0173 -6.4209 -2.7260 17 6 10.3468 -7.5510 -2.0012 18 6 10.7934 -8.6848 -2.6540 19 6 10.9204 -8.6851 -4.0304 20 6 10.5959 -7.5533 -4.7548 21 6 10.1438 -6.4214 -4.1026 22 7 7.6135 -6.3601 -1.0410 23 6 8.0454 -6.4094 0.2576 24 1 8.6718 -5.6213 0.6487 25 6 7.6781 -7.4724 1.0713 26 7 6.9143 -8.4326 0.5948 27 14 8.2678 -7.5400 2.8425 28 1 9.1065 -6.3490 3.1307 29 1 7.0958 -7.5520 3.7543 30 1 9.0694 -8.7727 3.0506 31 1 -0.3633 0.0001 1.0277 32 1 -0.3633 0.8900 -0.5137 33 1 -0.3633 -0.8900 -0.5138 34 1 1.6958 -2.0073 -0.0005 35 1 3.7932 -1.8837 2.0251 36 1 5.2464 -1.0415 1.4353 37 1 3.7933 -0.1106 1.8704 38 1 6.1034 -2.0102 -0.3947 39 1 5.5975 -4.7720 -0.7003 40 1 5.5975 -4.0199 -2.3136 41 1 7.8540 -3.0886 -1.8803 42 1 7.8548 -3.8405 -0.2670 43 1 9.8175 -4.3013 -2.5797 44 1 9.9640 -5.1425 -1.0180 45 1 10.2521 -7.5492 -0.9254 46 1 11.0473 -9.5690 -2.0880 47 1 11.2735 -9.5695 -4.5399 48 1 10.6955 -7.5534 -5.8301 49 1 9.8906 -5.5370 -4.6684 50 1 7.0512 -7.0681 -1.3922 51 1 6.6580 -9.1755 1.1633 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278532291.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:12 Heat of formation + Delta-G solvation = -52.323272 kcal Electronic energy + Delta-G solvation = -30228.262561 eV Core-core repulsion = 26127.146874 eV Total energy + Delta-G solvation = -4101.115687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.39623 -39.12590 -38.81202 -36.65802 -35.09217 -34.54496 -32.52145 -31.90027 -30.92654 -30.31838 -29.39712 -28.77160 -27.05620 -24.77065 -24.10822 -22.80326 -21.98707 -20.79401 -20.76619 -20.33388 -19.45957 -17.90495 -17.15691 -16.84188 -16.18218 -16.02963 -15.67989 -15.38353 -15.18888 -14.92755 -14.60024 -14.38102 -14.10519 -13.90329 -13.70559 -13.31079 -13.19585 -13.01754 -12.88240 -12.85289 -12.68721 -12.48247 -12.40732 -12.29027 -11.76808 -11.69231 -11.48459 -11.37434 -11.03107 -10.93401 -10.79983 -10.51047 -10.38074 -10.36285 -10.14331 -9.85656 -9.81850 -9.60209 -9.33198 -8.98639 -8.83530 -8.36007 -8.08800 -6.99434 -5.80370 -3.09127 1.90256 1.98585 2.40134 2.62727 2.80916 3.37164 3.42519 3.43119 3.46349 4.34831 4.52175 4.54302 4.67970 4.86733 4.95757 5.00147 5.14275 5.28467 5.31173 5.36176 5.40926 5.43158 5.50342 5.53637 5.56811 5.62701 5.66762 5.79808 5.92859 5.95018 6.01190 6.08369 6.12275 6.15991 6.22112 6.35082 6.40492 6.46684 6.64185 6.65506 6.68969 6.77327 6.90336 6.96412 7.11969 7.30959 7.35138 7.55930 7.61112 7.64983 8.00116 8.23581 8.36406 9.48674 10.06044 10.40877 11.41401 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011533 B = 0.002463 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.303194 B =11366.259495 C =12961.221611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.514 3.486 3 O -0.552 6.552 4 N -0.712 5.712 5 C 0.123 3.877 6 H 0.112 0.888 7 C -0.159 4.159 8 C 0.507 3.493 9 O -0.538 6.538 10 N -0.718 5.718 11 C 0.126 3.874 12 C -0.140 4.140 13 C 0.187 3.813 14 H 0.055 0.945 15 C -0.094 4.094 16 C -0.057 4.057 17 C -0.079 4.079 18 C -0.124 4.124 19 C -0.136 4.136 20 C -0.133 4.133 21 C -0.130 4.130 22 N -0.715 5.715 23 C -0.233 4.233 24 H 0.070 0.930 25 C -0.007 4.007 26 N -0.924 5.924 27 Si 0.894 3.106 28 H -0.281 1.281 29 H -0.293 1.293 30 H -0.293 1.293 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.412 0.588 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.133 0.867 46 H 0.113 0.887 47 H 0.109 0.891 48 H 0.110 0.890 49 H 0.111 0.889 50 H 0.386 0.614 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.473 12.072 -4.752 13.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.301 3.699 3 O -0.430 6.430 4 N -0.366 5.366 5 C 0.014 3.986 6 H 0.129 0.871 7 C -0.218 4.218 8 C 0.291 3.709 9 O -0.415 6.415 10 N -0.368 5.368 11 C 0.004 3.996 12 C -0.180 4.180 13 C 0.075 3.925 14 H 0.073 0.927 15 C -0.133 4.133 16 C -0.057 4.057 17 C -0.097 4.097 18 C -0.142 4.142 19 C -0.154 4.154 20 C -0.151 4.151 21 C -0.148 4.148 22 N -0.355 5.355 23 C -0.365 4.365 24 H 0.088 0.912 25 C -0.204 4.204 26 N -0.572 5.572 27 Si 0.726 3.274 28 H -0.207 1.207 29 H -0.221 1.221 30 H -0.220 1.220 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.249 0.751 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.232 0.768 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.151 0.849 46 H 0.131 0.869 47 H 0.128 0.872 48 H 0.128 0.872 49 H 0.129 0.871 50 H 0.219 0.781 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.544 12.196 -4.876 13.378 hybrid contribution 0.212 -0.623 1.108 1.289 sum -2.332 11.573 -3.767 12.392 Atomic orbital electron populations 1.21866 0.91320 1.05054 1.04878 1.20832 0.90742 0.83156 0.75155 1.90715 1.70800 1.31399 1.50109 1.45894 1.05927 1.09784 1.75009 1.20782 0.82134 0.97150 0.98529 0.87061 1.22126 1.01848 1.03405 0.94405 1.20464 0.83183 0.88150 0.79121 1.90712 1.55211 1.46473 1.49090 1.46040 1.06254 1.21669 1.62881 1.21426 0.94659 0.85358 0.98153 1.22271 0.93658 0.99352 1.02685 1.20051 0.91296 0.87767 0.93411 0.92698 1.21149 0.98755 0.93403 1.00024 1.19794 0.96839 0.96194 0.92899 1.21277 0.95304 0.91905 1.01235 1.21143 1.00321 0.98370 0.94350 1.20979 1.02146 0.97891 0.94425 1.20927 1.01378 0.93836 0.98937 1.20961 1.01482 0.98075 0.94266 1.42377 1.60239 1.23407 1.09445 1.19060 1.25135 1.04779 0.87494 0.91239 1.24673 1.00482 0.97478 0.97732 1.69665 1.40103 1.12022 1.35413 0.86322 0.77886 0.77272 0.85918 1.20653 1.22056 1.21986 0.88749 0.88808 0.89916 0.75121 0.91515 0.90794 0.90987 0.76800 0.89313 0.92529 0.93045 0.90810 0.92721 0.90684 0.84893 0.86907 0.87241 0.87199 0.87053 0.78081 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 10.30 36.00 0.37 -0.79 16 2 C 0.51 5.60 7.90 -10.99 -0.09 5.51 16 3 O -0.55 -8.00 16.76 5.55 0.09 -7.91 16 4 N -0.71 -7.74 4.95 -54.93 -0.27 -8.01 16 5 C 0.12 1.39 2.98 -69.08 -0.21 1.19 16 6 H 0.11 1.24 7.58 -51.93 -0.39 0.85 16 7 C -0.16 -1.60 9.38 37.16 0.35 -1.25 16 8 C 0.51 7.10 7.22 -10.99 -0.08 7.02 16 9 O -0.54 -9.52 15.84 5.56 0.09 -9.43 16 10 N -0.72 -9.34 5.45 -60.29 -0.33 -9.66 16 11 C 0.13 2.00 5.56 -4.04 -0.02 1.97 16 12 C -0.14 -2.06 4.73 -26.74 -0.13 -2.18 16 13 C 0.19 3.18 2.67 -67.94 -0.18 3.00 16 14 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 15 C -0.09 -1.50 4.75 -27.88 -0.13 -1.63 16 16 C -0.06 -0.97 4.95 -104.62 -0.52 -1.49 16 17 C -0.08 -1.47 9.32 -39.58 -0.37 -1.84 16 18 C -0.12 -2.10 10.05 -39.59 -0.40 -2.50 16 19 C -0.14 -2.07 10.05 -39.58 -0.40 -2.46 16 20 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 21 C -0.13 -1.98 9.70 -39.58 -0.38 -2.36 16 22 N -0.71 -15.46 4.14 -53.43 -0.22 -15.68 16 23 C -0.23 -5.58 7.90 -15.06 -0.12 -5.70 16 24 H 0.07 1.63 6.64 -52.49 -0.35 1.28 16 25 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 26 N -0.92 -26.18 13.06 55.49 0.72 -25.46 16 27 Si 0.89 21.08 29.55 -169.99 -5.02 16.06 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 30 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.41 4.26 7.79 -40.82 -0.32 3.94 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.63 7.56 -51.93 -0.39 0.24 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.40 4.01 7.89 -40.82 -0.32 3.69 16 39 H 0.09 1.78 7.75 -51.93 -0.40 1.38 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.07 1.18 7.11 -51.93 -0.37 0.81 16 43 H 0.05 0.74 8.09 -51.93 -0.42 0.32 16 44 H 0.07 1.30 7.05 -51.93 -0.37 0.94 16 45 H 0.13 2.76 7.39 -52.49 -0.39 2.37 16 46 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 47 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 48 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 49 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 50 H 0.39 9.49 8.02 -40.82 -0.33 9.17 16 51 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 422.66 15.07 6.37 6.37 Total: -1.00 -31.54 422.66 -9.62 -41.16 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: -8.26 Total: 18.69 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.79 Total: -6.12 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.10 Total: -58.81 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: 0.18 Total: -17.34 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -31.54 -9.62 -41.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278532291.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.166 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds