Wall clock time and date at job start Wed Apr 1 2020 05:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21287 * 120.00170 * 2 1 4 4 N 1.34773 * 120.00021 * 180.02562 * 2 1 3 5 5 C 1.46504 * 120.00556 * 179.97438 * 4 2 1 6 6 H 1.09002 * 109.46910 * 324.99996 * 5 4 2 7 7 C 1.53002 * 109.46876 * 84.99652 * 5 4 2 8 8 C 1.50701 * 109.47396 * 205.00034 * 5 4 2 9 9 O 1.21280 * 119.99781 * 359.97438 * 8 5 4 10 10 N 1.34771 * 119.99622 * 180.02562 * 8 5 4 11 11 C 1.46505 * 119.99622 * 179.97438 * 10 8 5 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.46906 * 55.00224 * 13 12 11 15 15 C 1.52998 * 109.47705 * 174.99884 * 13 12 11 16 16 C 1.50699 * 109.47757 * 185.00168 * 15 13 12 17 17 C 1.38240 * 119.99810 * 269.73065 * 16 15 13 18 18 C 1.38236 * 119.99504 * 179.76313 * 17 16 15 19 19 C 1.38227 * 120.00314 * 0.50576 * 18 17 16 20 20 C 1.38242 * 120.00179 * 359.74649 * 19 18 17 21 21 C 1.38231 * 119.99529 * 359.97438 * 20 19 18 22 22 N 1.46497 * 109.47408 * 295.00294 * 13 12 11 23 23 C 1.36941 * 119.99688 * 299.99939 * 22 13 12 24 24 H 1.07999 * 120.00228 * 359.97438 * 23 22 13 25 25 C 1.38810 * 119.99891 * 179.97438 * 23 22 13 26 26 N 1.31626 * 120.00242 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99976 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.46818 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.47056 * 120.00071 * 27 25 23 30 30 H 1.48502 * 109.47094 * 239.99784 * 27 25 23 31 31 H 1.09000 * 109.46806 * 270.00387 * 1 2 3 32 32 H 1.08997 * 109.46947 * 29.99469 * 1 2 3 33 33 H 1.08995 * 109.47253 * 150.00225 * 1 2 3 34 34 H 0.97007 * 119.99952 * 359.97438 * 4 2 1 35 35 H 1.08992 * 109.47063 * 60.00439 * 7 5 4 36 36 H 1.09004 * 109.46733 * 180.02562 * 7 5 4 37 37 H 1.08996 * 109.47407 * 300.00043 * 7 5 4 38 38 H 0.96996 * 120.00772 * 359.97438 * 10 8 5 39 39 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 40 40 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 41 41 H 1.09002 * 109.47153 * 300.00008 * 12 11 10 42 42 H 1.08998 * 109.47533 * 59.99637 * 12 11 10 43 43 H 1.08998 * 109.47140 * 305.00658 * 15 13 12 44 44 H 1.09001 * 109.46898 * 64.99635 * 15 13 12 45 45 H 1.07995 * 119.99950 * 359.97438 * 17 16 15 46 46 H 1.08004 * 119.99700 * 180.22934 * 18 17 16 47 47 H 1.07998 * 120.00238 * 179.72643 * 19 18 17 48 48 H 1.07993 * 120.00409 * 179.97438 * 20 19 18 49 49 H 1.08007 * 119.99994 * 179.97438 * 21 20 19 50 50 H 0.96998 * 120.00817 * 119.99169 * 22 13 12 51 51 H 0.96994 * 119.99780 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 1 4.0090 -0.3254 -0.5905 7 6 4.1564 -1.0419 1.4358 8 6 4.1479 -2.4549 -0.6020 9 8 3.3596 -3.2904 -0.9911 10 7 5.4729 -2.6783 -0.7061 11 6 5.9610 -3.9302 -1.2898 12 6 7.4909 -3.9303 -1.2905 13 6 8.0007 -5.2380 -1.8995 14 1 7.5657 -5.3713 -2.8900 15 6 9.5254 -5.1866 -2.0150 16 6 10.0173 -6.4209 -2.7260 17 6 10.3468 -7.5510 -2.0012 18 6 10.7934 -8.6848 -2.6540 19 6 10.9204 -8.6851 -4.0304 20 6 10.5959 -7.5533 -4.7548 21 6 10.1438 -6.4214 -4.1026 22 7 7.6135 -6.3601 -1.0410 23 6 8.0454 -6.4094 0.2576 24 1 8.6718 -5.6213 0.6487 25 6 7.6781 -7.4724 1.0713 26 7 6.9143 -8.4326 0.5948 27 14 8.2678 -7.5400 2.8425 28 1 9.1065 -6.3490 3.1307 29 1 7.0958 -7.5520 3.7543 30 1 9.0694 -8.7727 3.0506 31 1 -0.3633 0.0001 1.0277 32 1 -0.3633 0.8900 -0.5137 33 1 -0.3633 -0.8900 -0.5138 34 1 1.6958 -2.0073 -0.0005 35 1 3.7932 -1.8837 2.0251 36 1 5.2464 -1.0415 1.4353 37 1 3.7933 -0.1106 1.8704 38 1 6.1034 -2.0102 -0.3947 39 1 5.5975 -4.7720 -0.7003 40 1 5.5975 -4.0199 -2.3136 41 1 7.8540 -3.0886 -1.8803 42 1 7.8548 -3.8405 -0.2670 43 1 9.8175 -4.3013 -2.5797 44 1 9.9640 -5.1425 -1.0180 45 1 10.2521 -7.5492 -0.9254 46 1 11.0473 -9.5690 -2.0880 47 1 11.2735 -9.5695 -4.5399 48 1 10.6955 -7.5534 -5.8301 49 1 9.8906 -5.5370 -4.6684 50 1 7.0512 -7.0681 -1.3922 51 1 6.6580 -9.1755 1.1633 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278532291.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:11 Heat of formation + Delta-G solvation = -73.438126 kcal Electronic energy + Delta-G solvation = -30229.178170 eV Core-core repulsion = 26127.146874 eV Total energy + Delta-G solvation = -4102.031296 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.42784 -40.22931 -40.02279 -38.06710 -36.09071 -35.85966 -34.24693 -32.87247 -32.19157 -31.56519 -30.76293 -29.68962 -28.37232 -26.05917 -25.65901 -24.03664 -23.24453 -22.04626 -21.79151 -21.37421 -20.89515 -19.11562 -18.66198 -17.84155 -17.41795 -17.13825 -17.01893 -16.58573 -16.16390 -16.15477 -15.92363 -15.83607 -15.50276 -15.12715 -14.88634 -14.73332 -14.42893 -14.25532 -14.09793 -13.78514 -13.76408 -13.48184 -13.26883 -13.08490 -13.01983 -12.97084 -12.87656 -12.77192 -12.65696 -12.47166 -12.27891 -12.11783 -11.73247 -11.66032 -11.54420 -11.24394 -11.08393 -11.00828 -10.80059 -10.27516 -10.07451 -9.62660 -9.38892 -8.82794 -7.81734 -5.06186 0.65619 0.72325 1.45795 1.47392 1.48322 1.55059 1.57360 1.87580 2.44488 2.62059 3.08416 3.52264 3.56601 3.88069 3.95202 4.00618 4.03405 4.08272 4.18501 4.22916 4.31738 4.42240 4.45669 4.49855 4.60050 4.63428 4.66267 4.68862 4.73855 4.80219 4.84778 4.90716 4.99854 5.07419 5.11634 5.12559 5.18530 5.28661 5.32265 5.38477 5.44727 5.48760 5.54936 5.67109 5.74106 5.82648 6.05209 6.35171 6.38892 6.46625 6.48624 7.13797 7.16530 7.46391 8.22920 8.45144 9.42175 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011533 B = 0.002463 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.303194 B =11366.259495 C =12961.221611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.510 3.490 3 O -0.591 6.591 4 N -0.713 5.713 5 C 0.129 3.871 6 H 0.118 0.882 7 C -0.153 4.153 8 C 0.506 3.494 9 O -0.578 6.578 10 N -0.706 5.706 11 C 0.138 3.862 12 C -0.126 4.126 13 C 0.181 3.819 14 H 0.063 0.937 15 C -0.085 4.085 16 C -0.072 4.072 17 C -0.107 4.107 18 C -0.143 4.143 19 C -0.138 4.138 20 C -0.130 4.130 21 C -0.129 4.129 22 N -0.722 5.722 23 C -0.194 4.194 24 H 0.079 0.921 25 C -0.072 4.072 26 N -0.967 5.967 27 Si 0.943 3.057 28 H -0.263 1.263 29 H -0.306 1.306 30 H -0.305 1.305 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.414 0.586 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.416 0.584 39 H 0.040 0.960 40 H 0.054 0.946 41 H 0.093 0.907 42 H 0.064 0.936 43 H 0.091 0.909 44 H 0.057 0.943 45 H 0.097 0.903 46 H 0.112 0.888 47 H 0.136 0.864 48 H 0.144 0.856 49 H 0.141 0.859 50 H 0.368 0.632 51 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.705 14.594 -6.529 16.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.300 3.700 3 O -0.472 6.472 4 N -0.366 5.366 5 C 0.020 3.980 6 H 0.136 0.864 7 C -0.212 4.212 8 C 0.292 3.708 9 O -0.458 6.458 10 N -0.357 5.357 11 C 0.014 3.986 12 C -0.166 4.166 13 C 0.072 3.928 14 H 0.081 0.919 15 C -0.125 4.125 16 C -0.072 4.072 17 C -0.126 4.126 18 C -0.161 4.161 19 C -0.156 4.156 20 C -0.147 4.147 21 C -0.147 4.147 22 N -0.359 5.359 23 C -0.326 4.326 24 H 0.096 0.904 25 C -0.264 4.264 26 N -0.620 5.620 27 Si 0.776 3.224 28 H -0.187 1.187 29 H -0.234 1.234 30 H -0.233 1.233 31 H 0.131 0.869 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.252 0.748 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.253 0.747 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.110 0.890 44 H 0.075 0.925 45 H 0.116 0.884 46 H 0.130 0.870 47 H 0.153 0.847 48 H 0.162 0.838 49 H 0.159 0.841 50 H 0.199 0.801 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.721 14.796 -6.651 16.313 hybrid contribution 0.022 -1.358 1.510 2.031 sum -1.698 13.438 -5.141 14.488 Atomic orbital electron populations 1.21904 0.87994 1.06152 1.06376 1.21561 0.92306 0.82282 0.73867 1.90694 1.71904 1.32575 1.52035 1.45999 1.05802 1.10119 1.74712 1.20758 0.82683 0.95398 0.99149 0.86448 1.22098 1.02932 1.03015 0.93150 1.20950 0.83024 0.88543 0.78313 1.90696 1.56247 1.48031 1.50826 1.45865 1.06483 1.21075 1.62319 1.21098 0.95364 0.84968 0.97148 1.22122 0.92509 0.99313 1.02612 1.20339 0.92297 0.87115 0.93083 0.91916 1.21063 0.97082 0.94635 0.99673 1.19950 0.97323 0.95889 0.94029 1.21129 0.97886 0.93779 0.99775 1.21288 1.01033 0.98037 0.95724 1.21304 1.01386 0.99362 0.93510 1.21376 0.99637 0.93039 1.00691 1.21298 1.00502 0.99472 0.93437 1.42507 1.59777 1.24351 1.09269 1.19318 1.21960 1.03300 0.88066 0.90355 1.25223 1.02296 0.98258 1.00664 1.69808 1.43096 1.12982 1.36068 0.85495 0.76942 0.77213 0.82789 1.18748 1.23436 1.23306 0.86936 0.88247 0.88252 0.74829 0.92336 0.89079 0.90875 0.74730 0.94125 0.92754 0.88826 0.91773 0.89036 0.92473 0.88430 0.86975 0.84655 0.83785 0.84111 0.80149 0.94919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 10.30 71.23 0.73 -1.17 16 2 C 0.51 10.53 7.90 87.66 0.69 11.22 16 3 O -0.59 -16.61 16.76 -3.05 -0.05 -16.66 16 4 N -0.71 -14.85 4.95 -446.09 -2.21 -17.06 16 5 C 0.13 2.78 2.98 44.25 0.13 2.91 16 6 H 0.12 2.44 7.58 -2.39 -0.02 2.42 16 7 C -0.15 -2.86 9.38 71.98 0.68 -2.18 16 8 C 0.51 13.82 7.22 87.66 0.63 14.45 16 9 O -0.58 -20.61 15.84 -3.03 -0.05 -20.66 16 10 N -0.71 -17.31 5.45 -463.06 -2.52 -19.83 16 11 C 0.14 4.24 5.56 86.38 0.48 4.72 16 12 C -0.13 -3.41 4.73 30.59 0.14 -3.26 16 13 C 0.18 5.91 2.67 44.99 0.12 6.03 16 14 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 15 C -0.09 -2.54 4.75 29.85 0.14 -2.40 16 16 C -0.07 -2.35 4.95 -19.86 -0.10 -2.45 16 17 C -0.11 -4.08 9.32 22.27 0.21 -3.87 16 18 C -0.14 -4.89 10.05 22.27 0.22 -4.67 16 19 C -0.14 -3.91 10.05 22.27 0.22 -3.68 16 20 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 21 C -0.13 -3.52 9.70 22.27 0.22 -3.30 16 22 N -0.72 -31.72 4.14 -322.96 -1.34 -33.06 16 23 C -0.19 -9.45 7.90 84.03 0.66 -8.79 16 24 H 0.08 3.65 6.64 -2.91 -0.02 3.63 16 25 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 26 N -0.97 -57.59 13.06 21.65 0.28 -57.30 16 27 Si 0.94 44.82 29.55 68.60 2.03 46.84 16 28 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 29 H -0.31 -15.03 7.11 99.48 0.71 -14.32 16 30 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 31 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.41 8.34 7.79 -92.70 -0.72 7.61 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.09 1.35 7.56 -2.39 -0.02 1.33 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.42 7.27 7.89 -92.71 -0.73 6.53 16 39 H 0.04 1.67 7.75 -2.39 -0.02 1.65 16 40 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.06 1.90 7.11 -2.39 -0.02 1.88 16 43 H 0.09 2.07 8.09 -2.39 -0.02 2.05 16 44 H 0.06 1.91 7.05 -2.39 -0.02 1.89 16 45 H 0.10 4.31 7.39 -2.91 -0.02 4.29 16 46 H 0.11 3.68 8.06 -2.91 -0.02 3.66 16 47 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 48 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 49 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 50 H 0.37 18.80 8.02 -92.71 -0.74 18.05 16 51 H 0.24 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -72.83 422.66 0.78 -72.06 By element: Atomic # 1 Polarization: 49.94 SS G_CDS: -1.25 Total: 48.70 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 5.88 Total: -3.02 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -5.79 Total: -127.26 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -0.10 Total: -37.32 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -72.83 0.78 -72.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278532291.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.382 kcal (2) G-P(sol) polarization free energy of solvation -72.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds