Wall clock time and date at job start Wed Apr 1 2020 05:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21284 * 119.99592 * 2 1 4 4 N 1.34771 * 120.00123 * 179.97438 * 2 1 3 5 5 C 1.46492 * 120.00121 * 180.02562 * 4 2 1 6 6 H 1.08998 * 109.47276 * 35.00208 * 5 4 2 7 7 C 1.53001 * 109.47213 * 275.00112 * 5 4 2 8 8 C 1.50703 * 109.47441 * 155.00292 * 5 4 2 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 5 4 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 5 4 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 5 12 12 C 1.52996 * 109.47059 * 179.72339 * 11 10 8 13 13 C 1.53003 * 109.47301 * 179.97438 * 12 11 10 14 14 H 1.08996 * 109.46851 * 55.00107 * 13 12 11 15 15 C 1.53000 * 109.47041 * 174.99629 * 13 12 11 16 16 C 1.50697 * 109.46955 * 185.00080 * 15 13 12 17 17 C 1.38244 * 120.00020 * 269.72808 * 16 15 13 18 18 C 1.38232 * 119.99619 * 179.76621 * 17 16 15 19 19 C 1.38234 * 120.00373 * 0.50862 * 18 17 16 20 20 C 1.38227 * 119.99901 * 359.74669 * 19 18 17 21 21 C 1.38234 * 120.00111 * 90.00289 * 16 15 13 22 22 N 1.46498 * 109.47202 * 294.99767 * 13 12 11 23 23 C 1.36935 * 119.99771 * 300.00274 * 22 13 12 24 24 H 1.08001 * 120.00177 * 359.97438 * 23 22 13 25 25 C 1.38818 * 119.99548 * 179.97438 * 23 22 13 26 26 N 1.31617 * 120.00078 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99781 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47338 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.47095 * 119.99557 * 27 25 23 30 30 H 1.48499 * 109.47291 * 239.99649 * 27 25 23 31 31 H 1.08998 * 109.47701 * 240.00646 * 1 2 3 32 32 H 1.09005 * 109.47406 * 0.02562 * 1 2 3 33 33 H 1.09003 * 109.47069 * 120.00117 * 1 2 3 34 34 H 0.97006 * 119.99884 * 0.02562 * 4 2 1 35 35 H 1.08992 * 109.47503 * 300.00158 * 7 5 4 36 36 H 1.08998 * 109.46818 * 60.00232 * 7 5 4 37 37 H 1.09008 * 109.47076 * 179.97438 * 7 5 4 38 38 H 0.97001 * 119.99727 * 359.97438 * 10 8 5 39 39 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 40 40 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 41 41 H 1.09004 * 109.47066 * 299.99732 * 12 11 10 42 42 H 1.09000 * 109.47665 * 59.99541 * 12 11 10 43 43 H 1.08997 * 109.47809 * 305.00159 * 15 13 12 44 44 H 1.08999 * 109.47080 * 65.00288 * 15 13 12 45 45 H 1.07999 * 119.99449 * 359.97438 * 17 16 15 46 46 H 1.08004 * 119.99893 * 180.23041 * 18 17 16 47 47 H 1.08006 * 119.99876 * 179.72513 * 19 18 17 48 48 H 1.08005 * 119.99946 * 179.97438 * 20 19 18 49 49 H 1.07992 * 120.00160 * 0.02562 * 21 16 15 50 50 H 0.97001 * 119.99990 * 119.99594 * 22 13 12 51 51 H 0.97002 * 119.99564 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6458 -1.1671 0.0011 6 1 4.0089 -0.3252 0.5905 7 6 4.1564 -1.0417 -1.4358 8 6 4.1480 -2.4547 0.6020 9 8 3.3597 -3.2899 0.9918 10 7 5.4730 -2.6777 0.7071 11 6 5.9611 -3.9320 1.2856 12 6 7.4911 -3.9341 1.2817 13 6 8.0009 -5.2437 1.8865 14 1 7.5638 -6.0860 1.3502 15 6 9.5253 -5.3003 1.7692 16 6 10.0169 -6.6405 2.2521 17 6 10.3493 -6.8165 3.5824 18 6 10.7956 -8.0472 4.0262 19 6 10.9195 -9.0990 3.1379 20 6 10.5921 -8.9216 1.8067 21 6 10.1408 -7.6923 1.3638 22 7 7.6169 -5.3116 3.2987 23 6 8.0518 -4.3519 4.1733 24 1 8.6782 -3.5452 3.8221 25 6 7.6875 -4.4159 5.5113 26 7 6.9237 -5.3987 5.9391 27 14 8.2813 -3.1071 6.7046 28 1 9.1193 -2.1191 5.9788 29 1 7.1113 -2.4170 7.3047 30 1 9.0847 -3.7444 7.7786 31 1 -0.3634 -0.5137 0.8900 32 1 -0.3634 1.0277 -0.0005 33 1 -0.3633 -0.5139 -0.8900 34 1 1.6959 -2.0072 0.0005 35 1 3.7933 -1.8835 -2.0252 36 1 3.7933 -0.1104 -1.8703 37 1 5.2465 -1.0412 -1.4353 38 1 6.1035 -2.0095 0.3956 39 1 5.6003 -4.0242 2.3101 40 1 5.5952 -4.7714 0.6946 41 1 7.8519 -3.8418 0.2573 42 1 7.8572 -3.0946 1.8728 43 1 9.8151 -5.1607 0.7278 44 1 9.9661 -4.5108 2.3779 45 1 10.2571 -5.9933 4.2754 46 1 11.0518 -8.1858 5.0662 47 1 11.2724 -10.0594 3.4838 48 1 10.6893 -9.7433 1.1125 49 1 9.8857 -7.5536 0.3236 50 1 7.0545 -6.0363 3.6141 51 1 6.6695 -5.4436 6.8741 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278532292.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:17 Heat of formation + Delta-G solvation = -52.303499 kcal Electronic energy + Delta-G solvation = -30211.175124 eV Core-core repulsion = 26110.060294 eV Total energy + Delta-G solvation = -4101.114830 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.39342 -39.11937 -38.81095 -36.65545 -35.09529 -34.54488 -32.51447 -31.90242 -30.92398 -30.31768 -29.39294 -28.78415 -27.05800 -24.78695 -24.10243 -22.80342 -21.98696 -20.78753 -20.76563 -20.33800 -19.45359 -17.91314 -17.13662 -16.83955 -16.17832 -16.04684 -15.67304 -15.39868 -15.13831 -14.95810 -14.60179 -14.37777 -14.10683 -13.89876 -13.68820 -13.38834 -13.14390 -12.95992 -12.92524 -12.85435 -12.68950 -12.53573 -12.41332 -12.30411 -11.80046 -11.68976 -11.48450 -11.36822 -11.02277 -10.91993 -10.80029 -10.50163 -10.37591 -10.36178 -10.12822 -9.85871 -9.80902 -9.59480 -9.32763 -8.98092 -8.83142 -8.35947 -8.08742 -6.98601 -5.79392 -3.08116 1.90259 1.98623 2.41356 2.64235 2.80204 3.38852 3.42360 3.44556 3.48079 4.34853 4.51918 4.55672 4.67317 4.83255 4.95195 5.03062 5.14561 5.27893 5.30769 5.32438 5.40189 5.43485 5.49619 5.50741 5.57260 5.62782 5.66881 5.79713 5.84726 5.94310 6.01043 6.08189 6.11970 6.16234 6.22072 6.35305 6.40720 6.46835 6.64432 6.65549 6.69257 6.77712 6.90629 6.96412 7.12125 7.31290 7.35275 7.55985 7.61197 7.66183 8.01570 8.23615 8.37383 9.49771 10.06901 10.41633 11.42367 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011441 B = 0.002479 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.675817 B =11292.631008 C =12926.214532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.514 3.486 3 O -0.550 6.550 4 N -0.713 5.713 5 C 0.122 3.878 6 H 0.113 0.887 7 C -0.157 4.157 8 C 0.507 3.493 9 O -0.538 6.538 10 N -0.718 5.718 11 C 0.126 3.874 12 C -0.140 4.140 13 C 0.187 3.813 14 H 0.055 0.945 15 C -0.094 4.094 16 C -0.057 4.057 17 C -0.079 4.079 18 C -0.124 4.124 19 C -0.136 4.136 20 C -0.133 4.133 21 C -0.130 4.130 22 N -0.715 5.715 23 C -0.234 4.234 24 H 0.070 0.930 25 C -0.007 4.007 26 N -0.924 5.924 27 Si 0.894 3.106 28 H -0.281 1.281 29 H -0.293 1.293 30 H -0.292 1.292 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.411 0.589 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.398 0.602 39 H 0.088 0.912 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.133 0.867 46 H 0.113 0.887 47 H 0.109 0.891 48 H 0.110 0.890 49 H 0.111 0.889 50 H 0.386 0.614 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.509 2.708 -15.369 15.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.301 3.699 3 O -0.428 6.428 4 N -0.367 5.367 5 C 0.013 3.987 6 H 0.131 0.869 7 C -0.216 4.216 8 C 0.291 3.709 9 O -0.415 6.415 10 N -0.368 5.368 11 C 0.004 3.996 12 C -0.180 4.180 13 C 0.075 3.925 14 H 0.073 0.927 15 C -0.133 4.133 16 C -0.057 4.057 17 C -0.097 4.097 18 C -0.142 4.142 19 C -0.154 4.154 20 C -0.151 4.151 21 C -0.148 4.148 22 N -0.355 5.355 23 C -0.365 4.365 24 H 0.088 0.912 25 C -0.203 4.203 26 N -0.572 5.572 27 Si 0.726 3.274 28 H -0.206 1.206 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.248 0.752 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.232 0.768 39 H 0.106 0.894 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.151 0.849 46 H 0.131 0.869 47 H 0.128 0.872 48 H 0.128 0.872 49 H 0.129 0.871 50 H 0.219 0.781 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.580 2.971 -14.960 15.469 hybrid contribution 0.209 0.294 0.889 0.960 sum -2.371 3.265 -14.071 14.638 Atomic orbital electron populations 1.21902 0.91289 1.05518 1.04534 1.20836 0.90755 0.83158 0.75163 1.90720 1.70851 1.31382 1.49814 1.45824 1.05860 1.09758 1.75253 1.20783 0.82162 0.97386 0.98385 0.86914 1.22112 1.01700 1.03285 0.94470 1.20459 0.83181 0.88139 0.79120 1.90713 1.55211 1.46620 1.48938 1.46041 1.06253 1.21670 1.62876 1.21422 0.94653 0.83634 0.99883 1.22275 0.93659 1.02360 0.99680 1.20050 0.91309 0.93827 0.87325 0.92701 1.21151 0.98778 0.94183 0.99225 1.19794 0.96829 0.95501 0.93595 1.21281 0.95280 0.97628 0.95529 1.21145 1.00316 0.93622 0.99095 1.20978 1.02145 0.98489 0.93833 1.20926 1.01390 0.97048 0.95724 1.20957 1.01514 0.93254 0.99065 1.42374 1.60236 1.30855 1.02000 1.19060 1.25175 1.03342 0.88972 0.91230 1.24672 1.00449 0.98067 0.97141 1.69663 1.40117 1.32351 1.15052 0.86322 0.77920 0.81347 0.81816 1.20640 1.22034 1.21970 0.89118 0.88896 0.89325 0.75217 0.91782 0.90953 0.90890 0.76802 0.89357 0.92493 0.93050 0.90815 0.92727 0.90682 0.84887 0.86905 0.87241 0.87204 0.87061 0.78085 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.32 36.01 0.37 -0.83 16 2 C 0.51 5.73 7.90 -10.99 -0.09 5.65 16 3 O -0.55 -8.22 16.75 5.55 0.09 -8.12 16 4 N -0.71 -7.73 4.95 -54.94 -0.27 -8.00 16 5 C 0.12 1.38 2.98 -69.08 -0.21 1.17 16 6 H 0.11 1.36 7.58 -51.93 -0.39 0.97 16 7 C -0.16 -1.38 9.38 37.16 0.35 -1.04 16 8 C 0.51 7.11 7.22 -10.98 -0.08 7.03 16 9 O -0.54 -9.52 15.84 5.55 0.09 -9.43 16 10 N -0.72 -9.34 5.45 -60.30 -0.33 -9.67 16 11 C 0.13 2.00 5.56 -4.04 -0.02 1.98 16 12 C -0.14 -2.06 4.73 -26.73 -0.13 -2.19 16 13 C 0.19 3.18 2.67 -67.93 -0.18 3.00 16 14 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 15 C -0.09 -1.50 4.75 -27.88 -0.13 -1.63 16 16 C -0.06 -0.97 4.95 -104.62 -0.52 -1.49 16 17 C -0.08 -1.47 9.32 -39.58 -0.37 -1.84 16 18 C -0.12 -2.10 10.05 -39.59 -0.40 -2.50 16 19 C -0.14 -2.06 10.05 -39.59 -0.40 -2.46 16 20 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 21 C -0.13 -1.97 9.70 -39.58 -0.38 -2.35 16 22 N -0.71 -15.57 4.14 -53.42 -0.22 -15.79 16 23 C -0.23 -5.67 7.90 -15.06 -0.12 -5.79 16 24 H 0.07 1.65 6.64 -52.49 -0.35 1.30 16 25 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 26 N -0.92 -26.42 13.06 55.49 0.72 -25.70 16 27 Si 0.89 21.40 29.55 -169.99 -5.02 16.37 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 30 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.41 4.12 7.79 -40.82 -0.32 3.80 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.52 7.57 -51.92 -0.39 0.13 16 38 H 0.40 4.02 7.89 -40.82 -0.32 3.69 16 39 H 0.09 1.80 7.75 -51.93 -0.40 1.40 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 1.20 7.11 -51.93 -0.37 0.83 16 43 H 0.05 0.73 8.09 -51.93 -0.42 0.31 16 44 H 0.07 1.31 7.05 -51.93 -0.37 0.94 16 45 H 0.13 2.77 7.39 -52.49 -0.39 2.38 16 46 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 47 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 48 H 0.11 1.31 8.06 -52.48 -0.42 0.88 16 49 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 50 H 0.39 9.54 8.03 -40.82 -0.33 9.22 16 51 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 422.64 15.07 6.37 6.37 Total: -1.00 -32.01 422.64 -9.62 -41.63 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: -8.26 Total: 18.24 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -2.79 Total: -5.89 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.10 Total: -59.17 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.18 Total: -17.56 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -32.01 -9.62 -41.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278532292.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.672 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds