Wall clock time and date at job start Wed Apr 1 2020 05:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21284 * 119.99592 * 2 1 4 4 N 1.34771 * 120.00123 * 179.97438 * 2 1 3 5 5 C 1.46492 * 120.00121 * 180.02562 * 4 2 1 6 6 H 1.08998 * 109.47276 * 35.00208 * 5 4 2 7 7 C 1.53001 * 109.47213 * 275.00112 * 5 4 2 8 8 C 1.50703 * 109.47441 * 155.00292 * 5 4 2 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 5 4 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 5 4 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 5 12 12 C 1.52996 * 109.47059 * 179.72339 * 11 10 8 13 13 C 1.53003 * 109.47301 * 179.97438 * 12 11 10 14 14 H 1.08996 * 109.46851 * 55.00107 * 13 12 11 15 15 C 1.53000 * 109.47041 * 174.99629 * 13 12 11 16 16 C 1.50697 * 109.46955 * 185.00080 * 15 13 12 17 17 C 1.38244 * 120.00020 * 269.72808 * 16 15 13 18 18 C 1.38232 * 119.99619 * 179.76621 * 17 16 15 19 19 C 1.38234 * 120.00373 * 0.50862 * 18 17 16 20 20 C 1.38227 * 119.99901 * 359.74669 * 19 18 17 21 21 C 1.38234 * 120.00111 * 90.00289 * 16 15 13 22 22 N 1.46498 * 109.47202 * 294.99767 * 13 12 11 23 23 C 1.36935 * 119.99771 * 300.00274 * 22 13 12 24 24 H 1.08001 * 120.00177 * 359.97438 * 23 22 13 25 25 C 1.38818 * 119.99548 * 179.97438 * 23 22 13 26 26 N 1.31617 * 120.00078 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99781 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47338 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.47095 * 119.99557 * 27 25 23 30 30 H 1.48499 * 109.47291 * 239.99649 * 27 25 23 31 31 H 1.08998 * 109.47701 * 240.00646 * 1 2 3 32 32 H 1.09005 * 109.47406 * 0.02562 * 1 2 3 33 33 H 1.09003 * 109.47069 * 120.00117 * 1 2 3 34 34 H 0.97006 * 119.99884 * 0.02562 * 4 2 1 35 35 H 1.08992 * 109.47503 * 300.00158 * 7 5 4 36 36 H 1.08998 * 109.46818 * 60.00232 * 7 5 4 37 37 H 1.09008 * 109.47076 * 179.97438 * 7 5 4 38 38 H 0.97001 * 119.99727 * 359.97438 * 10 8 5 39 39 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 40 40 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 41 41 H 1.09004 * 109.47066 * 299.99732 * 12 11 10 42 42 H 1.09000 * 109.47665 * 59.99541 * 12 11 10 43 43 H 1.08997 * 109.47809 * 305.00159 * 15 13 12 44 44 H 1.08999 * 109.47080 * 65.00288 * 15 13 12 45 45 H 1.07999 * 119.99449 * 359.97438 * 17 16 15 46 46 H 1.08004 * 119.99893 * 180.23041 * 18 17 16 47 47 H 1.08006 * 119.99876 * 179.72513 * 19 18 17 48 48 H 1.08005 * 119.99946 * 179.97438 * 20 19 18 49 49 H 1.07992 * 120.00160 * 0.02562 * 21 16 15 50 50 H 0.97001 * 119.99990 * 119.99594 * 22 13 12 51 51 H 0.97002 * 119.99564 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6458 -1.1671 0.0011 6 1 4.0089 -0.3252 0.5905 7 6 4.1564 -1.0417 -1.4358 8 6 4.1480 -2.4547 0.6020 9 8 3.3597 -3.2899 0.9918 10 7 5.4730 -2.6777 0.7071 11 6 5.9611 -3.9320 1.2856 12 6 7.4911 -3.9341 1.2817 13 6 8.0009 -5.2437 1.8865 14 1 7.5638 -6.0860 1.3502 15 6 9.5253 -5.3003 1.7692 16 6 10.0169 -6.6405 2.2521 17 6 10.3493 -6.8165 3.5824 18 6 10.7956 -8.0472 4.0262 19 6 10.9195 -9.0990 3.1379 20 6 10.5921 -8.9216 1.8067 21 6 10.1408 -7.6923 1.3638 22 7 7.6169 -5.3116 3.2987 23 6 8.0518 -4.3519 4.1733 24 1 8.6782 -3.5452 3.8221 25 6 7.6875 -4.4159 5.5113 26 7 6.9237 -5.3987 5.9391 27 14 8.2813 -3.1071 6.7046 28 1 9.1193 -2.1191 5.9788 29 1 7.1113 -2.4170 7.3047 30 1 9.0847 -3.7444 7.7786 31 1 -0.3634 -0.5137 0.8900 32 1 -0.3634 1.0277 -0.0005 33 1 -0.3633 -0.5139 -0.8900 34 1 1.6959 -2.0072 0.0005 35 1 3.7933 -1.8835 -2.0252 36 1 3.7933 -0.1104 -1.8703 37 1 5.2465 -1.0412 -1.4353 38 1 6.1035 -2.0095 0.3956 39 1 5.6003 -4.0242 2.3101 40 1 5.5952 -4.7714 0.6946 41 1 7.8519 -3.8418 0.2573 42 1 7.8572 -3.0946 1.8728 43 1 9.8151 -5.1607 0.7278 44 1 9.9661 -4.5108 2.3779 45 1 10.2571 -5.9933 4.2754 46 1 11.0518 -8.1858 5.0662 47 1 11.2724 -10.0594 3.4838 48 1 10.6893 -9.7433 1.1125 49 1 9.8857 -7.5536 0.3236 50 1 7.0545 -6.0363 3.6141 51 1 6.6695 -5.4436 6.8741 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278532292.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:16 Heat of formation + Delta-G solvation = -74.072866 kcal Electronic energy + Delta-G solvation = -30212.119115 eV Core-core repulsion = 26110.060294 eV Total energy + Delta-G solvation = -4102.058821 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.42803 -40.23113 -40.02400 -38.06807 -36.09446 -35.85980 -34.25603 -32.86785 -32.19054 -31.56180 -30.76844 -29.68915 -28.36752 -26.06368 -25.64803 -24.03386 -23.24175 -22.04464 -21.79546 -21.38177 -20.89305 -19.13246 -18.66143 -17.83473 -17.41276 -17.18999 -16.98647 -16.58596 -16.16790 -16.14736 -15.96351 -15.82810 -15.50805 -15.08398 -14.91608 -14.74639 -14.41307 -14.23496 -14.09202 -13.85487 -13.70048 -13.47544 -13.26121 -13.09873 -13.02234 -12.98761 -12.87656 -12.75897 -12.64001 -12.47334 -12.29192 -12.12353 -11.73171 -11.66357 -11.54911 -11.24635 -11.08918 -11.01282 -10.80833 -10.27172 -10.07241 -9.62331 -9.38766 -8.83546 -7.83492 -5.07460 0.65929 0.72623 1.43907 1.46571 1.46844 1.53004 1.58547 1.86949 2.44432 2.60485 3.08704 3.51194 3.56034 3.88044 3.95210 4.01859 4.03682 4.10025 4.18822 4.23187 4.31984 4.42352 4.46132 4.51513 4.63433 4.63702 4.65437 4.69080 4.77177 4.80687 4.85022 4.90826 4.99935 5.07726 5.12405 5.14640 5.18667 5.29525 5.32655 5.38715 5.45086 5.48940 5.55207 5.65915 5.74396 5.82930 6.05563 6.35346 6.37804 6.46786 6.48695 7.14009 7.16968 7.45087 8.22286 8.43780 9.40440 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011441 B = 0.002479 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.675817 B =11292.631008 C =12926.214532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.508 3.492 3 O -0.593 6.593 4 N -0.712 5.712 5 C 0.125 3.875 6 H 0.106 0.894 7 C -0.148 4.148 8 C 0.506 3.494 9 O -0.578 6.578 10 N -0.706 5.706 11 C 0.138 3.862 12 C -0.126 4.126 13 C 0.181 3.819 14 H 0.065 0.935 15 C -0.085 4.085 16 C -0.072 4.072 17 C -0.108 4.108 18 C -0.143 4.143 19 C -0.138 4.138 20 C -0.129 4.129 21 C -0.128 4.128 22 N -0.722 5.722 23 C -0.194 4.194 24 H 0.078 0.922 25 C -0.072 4.072 26 N -0.967 5.967 27 Si 0.942 3.058 28 H -0.264 1.264 29 H -0.308 1.308 30 H -0.303 1.303 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.415 0.585 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.415 0.585 39 H 0.036 0.964 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.060 0.940 43 H 0.093 0.907 44 H 0.055 0.945 45 H 0.096 0.904 46 H 0.111 0.889 47 H 0.135 0.865 48 H 0.145 0.855 49 H 0.142 0.858 50 H 0.368 0.632 51 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.730 2.529 -19.125 19.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.298 3.702 3 O -0.474 6.474 4 N -0.366 5.366 5 C 0.017 3.983 6 H 0.123 0.877 7 C -0.207 4.207 8 C 0.292 3.708 9 O -0.458 6.458 10 N -0.357 5.357 11 C 0.014 3.986 12 C -0.166 4.166 13 C 0.072 3.928 14 H 0.083 0.917 15 C -0.125 4.125 16 C -0.072 4.072 17 C -0.126 4.126 18 C -0.161 4.161 19 C -0.156 4.156 20 C -0.147 4.147 21 C -0.146 4.146 22 N -0.359 5.359 23 C -0.326 4.326 24 H 0.096 0.904 25 C -0.264 4.264 26 N -0.619 5.619 27 Si 0.774 3.226 28 H -0.188 1.188 29 H -0.236 1.236 30 H -0.231 1.231 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.133 0.867 34 H 0.253 0.747 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.253 0.747 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.111 0.889 44 H 0.074 0.926 45 H 0.115 0.885 46 H 0.130 0.870 47 H 0.153 0.847 48 H 0.163 0.837 49 H 0.160 0.840 50 H 0.199 0.801 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.744 2.831 -18.790 19.082 hybrid contribution 0.016 0.265 1.928 1.946 sum -1.728 3.096 -16.862 17.231 Atomic orbital electron populations 1.21932 0.87904 1.06301 1.06347 1.21595 0.92378 0.82341 0.73900 1.90698 1.72019 1.32716 1.51931 1.45917 1.05774 1.10079 1.74811 1.20785 0.82691 0.95099 0.99767 0.87672 1.22074 1.02981 1.03321 0.92294 1.20946 0.83026 0.88519 0.78308 1.90696 1.56246 1.48212 1.50655 1.45867 1.06476 1.21245 1.62153 1.21099 0.95363 0.84987 0.97134 1.22129 0.92508 1.00111 1.01820 1.20356 0.92335 0.95537 0.84617 0.91700 1.21064 0.97073 0.93226 1.01089 1.19952 0.97317 0.96751 0.93170 1.21129 0.97934 0.97409 0.96173 1.21284 1.01076 0.93979 0.99783 1.21303 1.01390 0.98800 0.94076 1.21381 0.99603 0.97858 0.95873 1.21300 1.00450 0.92722 1.00140 1.42508 1.59762 1.29638 1.04017 1.19316 1.21923 1.02570 0.88839 0.90415 1.25211 1.02329 0.99979 0.98925 1.69801 1.43133 1.34644 1.14324 0.85516 0.76932 0.79885 0.80241 1.18814 1.23619 1.23102 0.87891 0.88669 0.86715 0.74684 0.91176 0.91231 0.88806 0.74743 0.94552 0.92300 0.88505 0.92097 0.88876 0.92619 0.88540 0.87049 0.84668 0.83726 0.83976 0.80139 0.94919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 10.32 71.24 0.74 -1.27 16 2 C 0.51 10.93 7.90 87.66 0.69 11.62 16 3 O -0.59 -17.57 16.75 -3.04 -0.05 -17.62 16 4 N -0.71 -14.86 4.95 -446.11 -2.21 -17.06 16 5 C 0.13 2.71 2.98 44.25 0.13 2.85 16 6 H 0.11 2.48 7.58 -2.39 -0.02 2.46 16 7 C -0.15 -2.28 9.38 71.98 0.68 -1.61 16 8 C 0.51 13.82 7.22 87.66 0.63 14.45 16 9 O -0.58 -20.58 15.84 -3.04 -0.05 -20.62 16 10 N -0.71 -17.29 5.45 -463.07 -2.52 -19.81 16 11 C 0.14 4.22 5.56 86.38 0.48 4.71 16 12 C -0.13 -3.40 4.73 30.59 0.14 -3.26 16 13 C 0.18 5.88 2.67 44.99 0.12 6.00 16 14 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 15 C -0.09 -2.53 4.75 29.85 0.14 -2.39 16 16 C -0.07 -2.34 4.95 -19.87 -0.10 -2.44 16 17 C -0.11 -4.12 9.32 22.27 0.21 -3.91 16 18 C -0.14 -4.92 10.05 22.27 0.22 -4.70 16 19 C -0.14 -3.90 10.05 22.27 0.22 -3.67 16 20 C -0.13 -3.29 10.05 22.27 0.22 -3.07 16 21 C -0.13 -3.45 9.70 22.27 0.22 -3.23 16 22 N -0.72 -31.99 4.14 -322.94 -1.34 -33.33 16 23 C -0.19 -9.59 7.90 84.04 0.66 -8.93 16 24 H 0.08 3.69 6.64 -2.91 -0.02 3.67 16 25 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 26 N -0.97 -58.23 13.06 21.65 0.28 -57.95 16 27 Si 0.94 45.69 29.55 68.60 2.03 47.71 16 28 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 29 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 30 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 31 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.14 8.12 -2.38 -0.02 1.12 16 33 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.42 7.99 7.79 -92.70 -0.72 7.27 16 35 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.09 1.04 7.57 -2.38 -0.02 1.02 16 38 H 0.42 7.26 7.89 -92.71 -0.73 6.53 16 39 H 0.04 1.51 7.75 -2.38 -0.02 1.50 16 40 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.10 1.82 8.14 -2.38 -0.02 1.81 16 42 H 0.06 1.84 7.11 -2.39 -0.02 1.82 16 43 H 0.09 2.07 8.09 -2.39 -0.02 2.05 16 44 H 0.06 1.87 7.05 -2.39 -0.02 1.85 16 45 H 0.10 4.29 7.39 -2.91 -0.02 4.27 16 46 H 0.11 3.68 8.06 -2.91 -0.02 3.66 16 47 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 48 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 49 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 50 H 0.37 18.91 8.03 -92.71 -0.74 18.16 16 51 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -74.86 422.64 0.78 -74.08 By element: Atomic # 1 Polarization: 48.22 SS G_CDS: -1.25 Total: 46.97 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 5.88 Total: -2.38 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -5.79 Total: -128.15 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -0.10 Total: -38.24 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -74.86 0.78 -74.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278532292.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.006 kcal (2) G-P(sol) polarization free energy of solvation -74.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds