Wall clock time and date at job start Wed Apr 1 2020 05:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21286 * 119.99887 * 2 1 4 4 N 1.34778 * 120.00140 * 179.97438 * 2 1 3 5 5 C 1.46501 * 119.99715 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47369 * 35.00037 * 5 4 2 7 7 C 1.53003 * 109.47079 * 275.00103 * 5 4 2 8 8 C 1.50701 * 109.46845 * 155.00440 * 5 4 2 9 9 O 1.21279 * 120.00074 * 359.97438 * 8 5 4 10 10 N 1.34778 * 119.99965 * 180.02562 * 8 5 4 11 11 C 1.46497 * 119.99736 * 180.02562 * 10 8 5 12 12 C 1.53006 * 109.46795 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.46846 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47398 * 305.00335 * 13 12 11 15 15 C 1.52997 * 109.47060 * 185.00166 * 13 12 11 16 16 C 1.50698 * 109.47721 * 175.00208 * 15 13 12 17 17 C 1.38239 * 120.00185 * 269.73486 * 16 15 13 18 18 C 1.38230 * 120.00287 * 179.76220 * 17 16 15 19 19 C 1.38237 * 119.99484 * 0.50042 * 18 17 16 20 20 C 1.38238 * 120.00439 * 359.74708 * 19 18 17 21 21 C 1.38232 * 120.00028 * 89.99519 * 16 15 13 22 22 N 1.46500 * 109.47023 * 65.00406 * 13 12 11 23 23 C 1.36939 * 119.99917 * 59.99548 * 22 13 12 24 24 H 1.07997 * 119.99844 * 0.02562 * 23 22 13 25 25 C 1.38812 * 119.99540 * 179.97438 * 23 22 13 26 26 N 1.31616 * 120.00694 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99729 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47496 * 90.00110 * 27 25 23 29 29 H 1.48503 * 109.47098 * 210.00245 * 27 25 23 30 30 H 1.48508 * 109.47255 * 330.00133 * 27 25 23 31 31 H 1.09006 * 109.46746 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47334 * 299.99646 * 1 2 3 33 33 H 1.09004 * 109.47226 * 60.00198 * 1 2 3 34 34 H 0.96992 * 119.99649 * 0.02562 * 4 2 1 35 35 H 1.08998 * 109.46717 * 180.02562 * 7 5 4 36 36 H 1.09002 * 109.47471 * 300.00162 * 7 5 4 37 37 H 1.09004 * 109.47134 * 60.00315 * 7 5 4 38 38 H 0.96995 * 119.99549 * 359.97438 * 10 8 5 39 39 H 1.09002 * 109.47354 * 59.99962 * 11 10 8 40 40 H 1.09001 * 109.47391 * 299.99649 * 11 10 8 41 41 H 1.09002 * 109.46824 * 60.00099 * 12 11 10 42 42 H 1.08991 * 109.47210 * 300.00183 * 12 11 10 43 43 H 1.09000 * 109.47325 * 295.00173 * 15 13 12 44 44 H 1.09008 * 109.47017 * 55.00082 * 15 13 12 45 45 H 1.08004 * 119.99638 * 359.97438 * 17 16 15 46 46 H 1.08001 * 120.00056 * 180.22520 * 18 17 16 47 47 H 1.08004 * 119.99559 * 179.72333 * 19 18 17 48 48 H 1.07997 * 120.00044 * 179.97438 * 20 19 18 49 49 H 1.08005 * 119.99909 * 0.02562 * 21 16 15 50 50 H 0.96996 * 119.99985 * 239.99363 * 22 13 12 51 51 H 0.96997 * 120.00620 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0000 6 1 4.0095 -0.3249 0.5887 7 6 4.1554 -1.0423 -1.4374 8 6 4.1485 -2.4544 0.6010 9 8 3.3606 -3.2895 0.9918 10 7 5.4737 -2.6773 0.7052 11 6 5.9622 -3.9290 1.2890 12 6 7.4922 -3.9288 1.2885 13 6 8.0025 -5.2358 1.8988 14 1 7.5681 -5.3681 2.8897 15 6 9.5273 -5.1842 2.0131 16 6 10.0198 -6.4175 2.7253 17 6 10.1531 -6.4144 4.1012 18 6 10.6002 -7.5473 4.7549 19 6 10.9240 -8.6800 4.0317 20 6 10.7956 -8.6816 2.6553 21 6 10.3435 -7.5503 2.0022 22 7 7.6148 -6.3590 1.0418 23 6 8.0458 -6.4098 -0.2570 24 1 8.6718 -5.6221 -0.6494 25 6 7.6788 -7.4743 -1.0688 26 7 6.9163 -8.4345 -0.5905 27 14 8.2673 -7.5440 -2.8403 28 1 9.5637 -8.2657 -2.9033 29 1 7.2624 -8.2584 -3.6680 30 1 8.4437 -6.1634 -3.3581 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6959 -2.0071 0.0005 35 1 5.2453 -1.0426 -1.4378 36 1 3.7919 -1.8845 -2.0262 37 1 3.7918 -0.1111 -1.8721 38 1 6.1038 -2.0092 0.3930 39 1 5.5991 -4.7709 0.6995 40 1 5.5988 -4.0186 2.3127 41 1 7.8556 -3.0869 1.8778 42 1 7.8552 -3.8394 0.2647 43 1 9.9652 -5.1413 1.0158 44 1 9.8196 -4.2981 2.5767 45 1 9.9046 -5.5278 4.6657 46 1 10.7009 -7.5460 5.8302 47 1 11.2776 -9.5638 4.5421 48 1 11.0489 -9.5665 2.0904 49 1 10.2438 -7.5513 0.9267 50 1 7.0528 -7.0666 1.3944 51 1 6.6596 -9.1782 -1.1579 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278532293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:23 Heat of formation + Delta-G solvation = -52.009234 kcal Electronic energy + Delta-G solvation = -30228.767556 eV Core-core repulsion = 26127.665486 eV Total energy + Delta-G solvation = -4101.102070 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.39707 -39.12548 -38.81079 -36.65581 -35.09307 -34.54378 -32.52080 -31.90469 -30.92643 -30.31649 -29.39535 -28.76930 -27.05477 -24.76863 -24.10517 -22.80119 -21.98463 -20.79777 -20.76449 -20.33695 -19.45819 -17.90028 -17.15483 -16.84577 -16.17954 -16.02610 -15.67359 -15.37882 -15.19763 -14.92721 -14.59810 -14.38253 -14.10629 -13.91013 -13.70143 -13.30670 -13.19869 -13.02012 -12.88397 -12.85436 -12.68914 -12.48383 -12.40419 -12.27915 -11.76203 -11.69088 -11.48225 -11.37087 -11.02507 -10.92510 -10.79581 -10.52178 -10.39059 -10.36159 -10.14460 -9.85854 -9.82217 -9.60173 -9.33303 -8.98131 -8.83338 -8.35874 -8.08626 -6.99432 -5.80097 -3.08908 1.90307 1.98841 2.40103 2.62900 2.80850 3.37204 3.42663 3.43301 3.45868 4.35011 4.52347 4.54437 4.68356 4.86957 4.94915 4.97370 5.15903 5.28602 5.31282 5.36259 5.41030 5.43349 5.50452 5.53382 5.56821 5.61831 5.66930 5.79945 5.93007 5.95177 6.01312 6.08482 6.12398 6.15941 6.22321 6.35202 6.40636 6.46815 6.64343 6.65721 6.69158 6.77476 6.90525 6.96551 7.12270 7.31041 7.35359 7.56002 7.61351 7.64587 8.00000 8.23668 8.36625 9.48825 10.06201 10.41102 11.41603 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011532 B = 0.002463 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.501816 B =11366.949049 C =12962.235280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.514 3.486 3 O -0.553 6.553 4 N -0.711 5.711 5 C 0.122 3.878 6 H 0.112 0.888 7 C -0.159 4.159 8 C 0.506 3.494 9 O -0.538 6.538 10 N -0.718 5.718 11 C 0.126 3.874 12 C -0.139 4.139 13 C 0.187 3.813 14 H 0.055 0.945 15 C -0.094 4.094 16 C -0.057 4.057 17 C -0.130 4.130 18 C -0.133 4.133 19 C -0.136 4.136 20 C -0.124 4.124 21 C -0.079 4.079 22 N -0.715 5.715 23 C -0.234 4.234 24 H 0.069 0.931 25 C -0.006 4.006 26 N -0.925 5.925 27 Si 0.895 3.105 28 H -0.291 1.291 29 H -0.293 1.293 30 H -0.283 1.283 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.412 0.588 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.111 0.889 46 H 0.110 0.890 47 H 0.109 0.891 48 H 0.113 0.887 49 H 0.133 0.867 50 H 0.386 0.614 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.513 12.089 4.743 13.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.301 3.699 3 O -0.431 6.431 4 N -0.365 5.365 5 C 0.014 3.986 6 H 0.129 0.871 7 C -0.218 4.218 8 C 0.291 3.709 9 O -0.415 6.415 10 N -0.368 5.368 11 C 0.004 3.996 12 C -0.180 4.180 13 C 0.075 3.925 14 H 0.073 0.927 15 C -0.133 4.133 16 C -0.057 4.057 17 C -0.148 4.148 18 C -0.151 4.151 19 C -0.154 4.154 20 C -0.142 4.142 21 C -0.097 4.097 22 N -0.355 5.355 23 C -0.366 4.366 24 H 0.087 0.913 25 C -0.203 4.203 26 N -0.572 5.572 27 Si 0.726 3.274 28 H -0.218 1.218 29 H -0.219 1.219 30 H -0.209 1.209 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.249 0.751 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.232 0.768 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.129 0.871 46 H 0.128 0.872 47 H 0.128 0.872 48 H 0.131 0.869 49 H 0.151 0.849 50 H 0.219 0.781 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.596 12.206 4.863 13.393 hybrid contribution 0.230 -0.615 -1.098 1.279 sum -2.365 11.591 3.765 12.415 Atomic orbital electron populations 1.21832 0.91328 1.04514 1.05260 1.20835 0.90735 0.83167 0.75147 1.90715 1.70743 1.31394 1.50241 1.45936 1.05937 1.09771 1.74897 1.20785 0.82155 0.97156 0.98536 0.87055 1.22127 1.01851 1.03410 0.94388 1.20466 0.83184 0.88141 0.79131 1.90712 1.55245 1.46485 1.49046 1.46041 1.06253 1.21694 1.62854 1.21426 0.94656 0.85364 0.98151 1.22273 0.93657 0.99350 1.02676 1.20053 0.91290 0.87765 0.93419 0.92695 1.21151 0.98754 0.93409 1.00015 1.19793 0.96862 0.96181 0.92913 1.20963 1.01508 0.98052 0.94263 1.20926 1.01417 0.93810 0.98932 1.20981 1.02134 0.97895 0.94427 1.21146 1.00307 0.98402 0.94347 1.21280 0.95249 0.91905 1.01271 1.42369 1.60269 1.23366 1.09449 1.19014 1.25247 1.04757 0.87534 0.91298 1.24668 1.00463 0.97460 0.97729 1.69648 1.40049 1.11964 1.35556 0.86390 0.77887 0.77330 0.85744 1.21826 1.21945 1.20918 0.90323 0.88642 0.88680 0.75119 0.90795 0.91518 0.90978 0.76802 0.89318 0.92521 0.93056 0.90808 0.90691 0.92721 0.87055 0.87199 0.87243 0.86910 0.84868 0.78081 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.39 36.01 0.37 -0.77 16 2 C 0.51 5.60 7.90 -10.99 -0.09 5.52 16 3 O -0.55 -8.01 16.76 5.55 0.09 -7.92 16 4 N -0.71 -7.74 4.95 -54.93 -0.27 -8.01 16 5 C 0.12 1.39 2.99 -69.08 -0.21 1.19 16 6 H 0.11 1.25 7.58 -51.93 -0.39 0.85 16 7 C -0.16 -1.60 9.38 37.16 0.35 -1.25 16 8 C 0.51 7.11 7.22 -10.98 -0.08 7.03 16 9 O -0.54 -9.53 15.84 5.56 0.09 -9.44 16 10 N -0.72 -9.36 5.45 -60.29 -0.33 -9.68 16 11 C 0.13 2.00 5.56 -4.04 -0.02 1.98 16 12 C -0.14 -2.06 4.73 -26.73 -0.13 -2.19 16 13 C 0.19 3.18 2.67 -67.93 -0.18 3.00 16 14 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 15 C -0.09 -1.50 4.75 -27.89 -0.13 -1.63 16 16 C -0.06 -0.98 4.95 -104.62 -0.52 -1.50 16 17 C -0.13 -1.98 9.70 -39.58 -0.38 -2.36 16 18 C -0.13 -1.94 10.05 -39.58 -0.40 -2.33 16 19 C -0.14 -2.07 10.05 -39.58 -0.40 -2.47 16 20 C -0.12 -2.11 10.05 -39.58 -0.40 -2.51 16 21 C -0.08 -1.47 9.31 -39.59 -0.37 -1.84 16 22 N -0.71 -15.47 4.13 -53.43 -0.22 -15.69 16 23 C -0.23 -5.61 7.88 -15.06 -0.12 -5.73 16 24 H 0.07 1.61 6.64 -52.49 -0.35 1.26 16 25 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 26 N -0.92 -26.18 13.06 55.49 0.72 -25.46 16 27 Si 0.89 21.09 29.55 -169.99 -5.02 16.07 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 30 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 31 H 0.08 0.40 7.91 -51.93 -0.41 -0.01 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.41 4.27 7.63 -40.82 -0.31 3.96 16 35 H 0.07 0.64 7.56 -51.93 -0.39 0.24 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.40 4.03 7.89 -40.82 -0.32 3.70 16 39 H 0.09 1.78 7.75 -51.93 -0.40 1.38 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.07 1.18 7.11 -51.93 -0.37 0.81 16 43 H 0.07 1.30 7.05 -51.93 -0.37 0.93 16 44 H 0.05 0.74 8.08 -51.92 -0.42 0.32 16 45 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 46 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 47 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 48 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 49 H 0.13 2.78 7.37 -52.48 -0.39 2.39 16 50 H 0.39 9.50 8.03 -40.82 -0.33 9.17 16 51 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 422.29 15.07 6.36 6.36 Total: -1.00 -31.49 422.29 -9.60 -41.10 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: -8.24 Total: 18.80 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -2.79 Total: -6.13 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.10 Total: -58.84 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.18 Total: -17.35 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -31.49 -9.60 -41.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278532293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.914 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds