Wall clock time and date at job start Wed Apr 1 2020 05:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21286 * 119.99887 * 2 1 4 4 N 1.34778 * 120.00140 * 179.97438 * 2 1 3 5 5 C 1.46501 * 119.99715 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47369 * 35.00037 * 5 4 2 7 7 C 1.53003 * 109.47079 * 275.00103 * 5 4 2 8 8 C 1.50701 * 109.46845 * 155.00440 * 5 4 2 9 9 O 1.21279 * 120.00074 * 359.97438 * 8 5 4 10 10 N 1.34778 * 119.99965 * 180.02562 * 8 5 4 11 11 C 1.46497 * 119.99736 * 180.02562 * 10 8 5 12 12 C 1.53006 * 109.46795 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.46846 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47398 * 305.00335 * 13 12 11 15 15 C 1.52997 * 109.47060 * 185.00166 * 13 12 11 16 16 C 1.50698 * 109.47721 * 175.00208 * 15 13 12 17 17 C 1.38239 * 120.00185 * 269.73486 * 16 15 13 18 18 C 1.38230 * 120.00287 * 179.76220 * 17 16 15 19 19 C 1.38237 * 119.99484 * 0.50042 * 18 17 16 20 20 C 1.38238 * 120.00439 * 359.74708 * 19 18 17 21 21 C 1.38232 * 120.00028 * 89.99519 * 16 15 13 22 22 N 1.46500 * 109.47023 * 65.00406 * 13 12 11 23 23 C 1.36939 * 119.99917 * 59.99548 * 22 13 12 24 24 H 1.07997 * 119.99844 * 0.02562 * 23 22 13 25 25 C 1.38812 * 119.99540 * 179.97438 * 23 22 13 26 26 N 1.31616 * 120.00694 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99729 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47496 * 90.00110 * 27 25 23 29 29 H 1.48503 * 109.47098 * 210.00245 * 27 25 23 30 30 H 1.48508 * 109.47255 * 330.00133 * 27 25 23 31 31 H 1.09006 * 109.46746 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47334 * 299.99646 * 1 2 3 33 33 H 1.09004 * 109.47226 * 60.00198 * 1 2 3 34 34 H 0.96992 * 119.99649 * 0.02562 * 4 2 1 35 35 H 1.08998 * 109.46717 * 180.02562 * 7 5 4 36 36 H 1.09002 * 109.47471 * 300.00162 * 7 5 4 37 37 H 1.09004 * 109.47134 * 60.00315 * 7 5 4 38 38 H 0.96995 * 119.99549 * 359.97438 * 10 8 5 39 39 H 1.09002 * 109.47354 * 59.99962 * 11 10 8 40 40 H 1.09001 * 109.47391 * 299.99649 * 11 10 8 41 41 H 1.09002 * 109.46824 * 60.00099 * 12 11 10 42 42 H 1.08991 * 109.47210 * 300.00183 * 12 11 10 43 43 H 1.09000 * 109.47325 * 295.00173 * 15 13 12 44 44 H 1.09008 * 109.47017 * 55.00082 * 15 13 12 45 45 H 1.08004 * 119.99638 * 359.97438 * 17 16 15 46 46 H 1.08001 * 120.00056 * 180.22520 * 18 17 16 47 47 H 1.08004 * 119.99559 * 179.72333 * 19 18 17 48 48 H 1.07997 * 120.00044 * 179.97438 * 20 19 18 49 49 H 1.08005 * 119.99909 * 0.02562 * 21 16 15 50 50 H 0.96996 * 119.99985 * 239.99363 * 22 13 12 51 51 H 0.96997 * 120.00620 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0000 6 1 4.0095 -0.3249 0.5887 7 6 4.1554 -1.0423 -1.4374 8 6 4.1485 -2.4544 0.6010 9 8 3.3606 -3.2895 0.9918 10 7 5.4737 -2.6773 0.7052 11 6 5.9622 -3.9290 1.2890 12 6 7.4922 -3.9288 1.2885 13 6 8.0025 -5.2358 1.8988 14 1 7.5681 -5.3681 2.8897 15 6 9.5273 -5.1842 2.0131 16 6 10.0198 -6.4175 2.7253 17 6 10.1531 -6.4144 4.1012 18 6 10.6002 -7.5473 4.7549 19 6 10.9240 -8.6800 4.0317 20 6 10.7956 -8.6816 2.6553 21 6 10.3435 -7.5503 2.0022 22 7 7.6148 -6.3590 1.0418 23 6 8.0458 -6.4098 -0.2570 24 1 8.6718 -5.6221 -0.6494 25 6 7.6788 -7.4743 -1.0688 26 7 6.9163 -8.4345 -0.5905 27 14 8.2673 -7.5440 -2.8403 28 1 9.5637 -8.2657 -2.9033 29 1 7.2624 -8.2584 -3.6680 30 1 8.4437 -6.1634 -3.3581 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6959 -2.0071 0.0005 35 1 5.2453 -1.0426 -1.4378 36 1 3.7919 -1.8845 -2.0262 37 1 3.7918 -0.1111 -1.8721 38 1 6.1038 -2.0092 0.3930 39 1 5.5991 -4.7709 0.6995 40 1 5.5988 -4.0186 2.3127 41 1 7.8556 -3.0869 1.8778 42 1 7.8552 -3.8394 0.2647 43 1 9.9652 -5.1413 1.0158 44 1 9.8196 -4.2981 2.5767 45 1 9.9046 -5.5278 4.6657 46 1 10.7009 -7.5460 5.8302 47 1 11.2776 -9.5638 4.5421 48 1 11.0489 -9.5665 2.0904 49 1 10.2438 -7.5513 0.9267 50 1 7.0528 -7.0666 1.3944 51 1 6.6596 -9.1782 -1.1579 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278532293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:22 Heat of formation + Delta-G solvation = -73.075758 kcal Electronic energy + Delta-G solvation = -30229.681069 eV Core-core repulsion = 26127.665486 eV Total energy + Delta-G solvation = -4102.015583 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.42925 -40.22999 -40.02361 -38.06587 -36.09232 -35.85968 -34.24707 -32.87624 -32.19375 -31.56632 -30.76245 -29.68712 -28.37239 -26.05664 -25.65768 -24.03595 -23.24496 -22.04653 -21.79304 -21.38090 -20.89519 -19.11370 -18.65863 -17.84543 -17.41800 -17.13448 -17.01877 -16.57941 -16.17214 -16.15532 -15.92520 -15.83749 -15.50385 -15.12340 -14.88895 -14.74005 -14.42925 -14.25601 -14.09918 -13.78688 -13.76975 -13.47912 -13.26586 -13.08834 -13.01338 -12.96159 -12.84862 -12.76266 -12.65132 -12.47423 -12.32404 -12.12655 -11.73400 -11.66033 -11.54572 -11.24659 -11.08519 -11.00498 -10.79265 -10.27792 -10.07473 -9.62806 -9.38960 -8.82730 -7.81497 -5.05984 0.65424 0.72286 1.46678 1.47277 1.48253 1.54256 1.57384 1.87327 2.44672 2.62187 3.08320 3.52225 3.56543 3.88327 3.95295 4.00589 4.03391 4.08348 4.18446 4.22843 4.31615 4.42212 4.45644 4.48036 4.59828 4.63417 4.66494 4.68836 4.73828 4.80164 4.84673 4.90727 4.99811 5.06557 5.11518 5.12433 5.18482 5.28538 5.32194 5.38406 5.44687 5.48759 5.54947 5.66844 5.73991 5.82570 6.05180 6.35089 6.38901 6.46667 6.48555 7.13661 7.16395 7.46488 8.23098 8.45410 9.42219 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011532 B = 0.002463 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.501816 B =11366.949049 C =12962.235280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.510 3.490 3 O -0.592 6.592 4 N -0.712 5.712 5 C 0.129 3.871 6 H 0.118 0.882 7 C -0.153 4.153 8 C 0.506 3.494 9 O -0.578 6.578 10 N -0.706 5.706 11 C 0.138 3.862 12 C -0.126 4.126 13 C 0.181 3.819 14 H 0.063 0.937 15 C -0.085 4.085 16 C -0.072 4.072 17 C -0.129 4.129 18 C -0.130 4.130 19 C -0.138 4.138 20 C -0.143 4.143 21 C -0.107 4.107 22 N -0.721 5.721 23 C -0.196 4.196 24 H 0.078 0.922 25 C -0.072 4.072 26 N -0.967 5.967 27 Si 0.944 3.056 28 H -0.296 1.296 29 H -0.309 1.309 30 H -0.269 1.269 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.414 0.586 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.416 0.584 39 H 0.040 0.960 40 H 0.054 0.946 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.091 0.909 45 H 0.141 0.859 46 H 0.145 0.855 47 H 0.136 0.864 48 H 0.112 0.888 49 H 0.097 0.903 50 H 0.368 0.632 51 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.783 14.628 6.530 16.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.300 3.700 3 O -0.473 6.473 4 N -0.366 5.366 5 C 0.020 3.980 6 H 0.136 0.864 7 C -0.212 4.212 8 C 0.292 3.708 9 O -0.458 6.458 10 N -0.357 5.357 11 C 0.014 3.986 12 C -0.165 4.165 13 C 0.072 3.928 14 H 0.081 0.919 15 C -0.125 4.125 16 C -0.072 4.072 17 C -0.147 4.147 18 C -0.147 4.147 19 C -0.155 4.155 20 C -0.161 4.161 21 C -0.126 4.126 22 N -0.359 5.359 23 C -0.328 4.328 24 H 0.096 0.904 25 C -0.264 4.264 26 N -0.619 5.619 27 Si 0.776 3.224 28 H -0.224 1.224 29 H -0.236 1.236 30 H -0.194 1.194 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.252 0.748 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.253 0.747 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.110 0.890 45 H 0.159 0.841 46 H 0.162 0.838 47 H 0.154 0.846 48 H 0.130 0.870 49 H 0.115 0.885 50 H 0.198 0.802 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.814 14.823 6.647 16.346 hybrid contribution 0.055 -1.355 -1.503 2.024 sum -1.759 13.468 5.144 14.524 Atomic orbital electron populations 1.21880 0.88000 1.06093 1.06325 1.21564 0.92300 0.82290 0.73858 1.90693 1.71850 1.32562 1.52146 1.46046 1.05813 1.10113 1.74600 1.20761 0.82704 0.95407 0.99150 0.86435 1.22099 1.02924 1.03023 0.93142 1.20953 0.83023 0.88534 0.78324 1.90696 1.56278 1.48040 1.50780 1.45867 1.06484 1.21100 1.62298 1.21098 0.95356 0.84973 0.97149 1.22123 0.92514 0.99319 1.02587 1.20341 0.92286 0.87108 0.93096 0.91914 1.21065 0.97089 0.94642 0.99664 1.19950 0.97343 0.95859 0.94050 1.21300 1.00507 0.99466 0.93421 1.21377 0.99659 0.93011 1.00693 1.21306 1.01371 0.99371 0.93498 1.21288 1.01021 0.98060 0.95730 1.21126 0.97859 0.93805 0.99778 1.42496 1.59816 1.24312 1.09269 1.19278 1.22097 1.03317 0.88121 0.90402 1.25219 1.02255 0.98224 1.00680 1.69795 1.43046 1.12909 1.36182 0.85566 0.76601 0.77544 0.82705 1.22380 1.23642 1.19365 0.88539 0.87629 0.87383 0.74833 0.89095 0.92336 0.90865 0.74739 0.94123 0.92744 0.88837 0.91793 0.92477 0.89026 0.84095 0.83769 0.84645 0.86993 0.88479 0.80151 0.94901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 10.39 71.24 0.74 -1.15 16 2 C 0.51 10.53 7.90 87.66 0.69 11.22 16 3 O -0.59 -16.60 16.76 -3.05 -0.05 -16.65 16 4 N -0.71 -14.86 4.95 -446.08 -2.21 -17.07 16 5 C 0.13 2.77 2.99 44.25 0.13 2.90 16 6 H 0.12 2.44 7.58 -2.39 -0.02 2.42 16 7 C -0.15 -2.86 9.38 71.98 0.68 -2.19 16 8 C 0.51 13.83 7.22 87.66 0.63 14.47 16 9 O -0.58 -20.62 15.84 -3.03 -0.05 -20.66 16 10 N -0.71 -17.35 5.45 -463.05 -2.52 -19.88 16 11 C 0.14 4.25 5.56 86.38 0.48 4.73 16 12 C -0.13 -3.42 4.73 30.60 0.14 -3.27 16 13 C 0.18 5.92 2.67 44.99 0.12 6.04 16 14 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 15 C -0.09 -2.55 4.75 29.85 0.14 -2.41 16 16 C -0.07 -2.36 4.95 -19.87 -0.10 -2.45 16 17 C -0.13 -3.52 9.70 22.27 0.22 -3.30 16 18 C -0.13 -3.34 10.05 22.27 0.22 -3.11 16 19 C -0.14 -3.91 10.05 22.27 0.22 -3.69 16 20 C -0.14 -4.91 10.05 22.27 0.22 -4.69 16 21 C -0.11 -4.09 9.31 22.27 0.21 -3.89 16 22 N -0.72 -31.77 4.13 -322.94 -1.33 -33.10 16 23 C -0.20 -9.55 7.88 84.03 0.66 -8.89 16 24 H 0.08 3.63 6.64 -2.91 -0.02 3.61 16 25 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 26 N -0.97 -57.58 13.06 21.65 0.28 -57.30 16 27 Si 0.94 44.82 29.55 68.60 2.03 46.85 16 28 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 29 H -0.31 -15.35 7.11 99.48 0.71 -14.64 16 30 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 31 H 0.10 0.77 7.91 -2.38 -0.02 0.75 16 32 H 0.11 1.04 8.14 -2.39 -0.02 1.03 16 33 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.41 8.35 7.63 -92.71 -0.71 7.64 16 35 H 0.09 1.36 7.56 -2.39 -0.02 1.34 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.42 7.30 7.89 -92.71 -0.73 6.57 16 39 H 0.04 1.67 7.75 -2.39 -0.02 1.65 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.06 1.90 7.11 -2.39 -0.02 1.89 16 43 H 0.06 1.91 7.05 -2.39 -0.02 1.89 16 44 H 0.09 2.08 8.08 -2.38 -0.02 2.06 16 45 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 46 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 47 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 48 H 0.11 3.69 8.06 -2.91 -0.02 3.67 16 49 H 0.10 4.32 7.37 -2.91 -0.02 4.30 16 50 H 0.37 18.81 8.03 -92.71 -0.74 18.07 16 51 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -72.74 422.29 0.80 -71.94 By element: Atomic # 1 Polarization: 50.22 SS G_CDS: -1.23 Total: 48.99 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 5.89 Total: -3.11 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -5.78 Total: -127.35 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -0.10 Total: -37.32 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -72.74 0.80 -71.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278532293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.141 kcal (2) G-P(sol) polarization free energy of solvation -72.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds