Wall clock time and date at job start Wed Apr 1 2020 04:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47086 * 2 1 4 4 O 1.42899 * 109.46840 * 119.99739 * 2 1 3 5 5 C 1.35908 * 117.00270 * 276.45733 * 4 2 1 6 6 C 1.39147 * 120.47044 * 4.99021 * 5 4 2 7 7 C 1.38535 * 118.37067 * 180.02562 * 6 5 4 8 8 C 1.38254 * 119.22260 * 0.25699 * 7 6 5 9 9 N 1.31847 * 120.88638 * 359.46941 * 8 7 6 10 10 C 1.31839 * 121.77935 * 0.54299 * 9 8 7 11 11 C 1.50693 * 109.47182 * 240.00017 * 2 1 3 12 12 O 1.21277 * 120.00104 * 244.99957 * 11 2 1 13 13 N 1.34780 * 120.00487 * 65.00025 * 11 2 1 14 14 C 1.46490 * 120.00565 * 180.02562 * 13 11 2 15 15 C 1.52996 * 109.47643 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.46154 * 60.02359 * 15 14 13 17 17 C 1.53043 * 109.45792 * 300.07029 * 15 14 13 18 18 C 1.53197 * 109.31565 * 178.61196 * 17 15 14 19 19 N 1.46928 * 108.77344 * 54.63155 * 18 17 15 20 20 C 1.36936 * 120.63143 * 126.41644 * 19 18 17 21 21 H 1.07999 * 120.00104 * 212.19873 * 20 19 18 22 22 C 1.38805 * 119.99899 * 32.19444 * 20 19 18 23 23 N 1.31624 * 120.00076 * 17.12198 * 22 20 19 24 24 Si 1.86801 * 120.00353 * 197.12060 * 22 20 19 25 25 H 1.48509 * 109.46965 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47574 * 119.99845 * 24 22 20 27 27 H 1.48500 * 109.47059 * 240.00485 * 24 22 20 28 28 C 1.46929 * 118.74131 * 306.39403 * 19 18 17 29 29 C 1.53045 * 109.46516 * 180.02562 * 15 14 13 30 30 H 1.09002 * 109.47418 * 300.00187 * 1 2 3 31 31 H 1.09007 * 109.46959 * 60.00114 * 1 2 3 32 32 H 1.08997 * 109.47241 * 180.02562 * 1 2 3 33 33 H 1.07997 * 120.81285 * 359.97438 * 6 5 4 34 34 H 1.08001 * 120.38857 * 179.97438 * 7 6 5 35 35 H 1.08007 * 119.55497 * 179.74456 * 8 7 6 36 36 H 1.08003 * 119.65593 * 179.75121 * 10 9 8 37 37 H 0.97007 * 119.99604 * 359.97438 * 13 11 2 38 38 H 1.09001 * 109.47235 * 299.99820 * 14 13 11 39 39 H 1.09003 * 109.47193 * 59.99608 * 14 13 11 40 40 H 1.09003 * 109.47045 * 60.00010 * 16 15 14 41 41 H 1.08997 * 109.47742 * 180.02562 * 16 15 14 42 42 H 1.09003 * 109.47393 * 300.00738 * 16 15 14 43 43 H 1.09002 * 109.49535 * 298.56141 * 17 15 14 44 44 H 1.08998 * 109.50379 * 58.65758 * 17 15 14 45 45 H 1.08994 * 109.58432 * 294.85233 * 18 17 15 46 46 H 1.08996 * 109.58929 * 174.41712 * 18 17 15 47 47 H 0.96999 * 120.00211 * 179.97438 * 23 22 20 48 48 H 1.09002 * 109.58247 * 293.82364 * 28 19 18 49 49 H 1.08999 * 109.70420 * 173.46446 * 28 19 18 50 50 H 1.08995 * 109.49090 * 301.33652 * 29 15 14 51 51 H 1.08998 * 109.49283 * 61.43179 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0835 0.0549 2.3116 6 6 1.6136 1.3641 2.3478 7 6 1.7144 2.0670 3.5374 8 6 2.2789 1.4516 4.6392 9 7 2.7099 0.2073 4.5727 10 6 2.6324 -0.4958 3.4602 11 6 2.0323 -0.7104 -1.2304 12 8 2.6530 -1.7466 -1.1215 13 7 1.7920 -0.1942 -2.4520 14 6 2.2798 -0.8850 -3.6481 15 6 1.8758 -0.0946 -4.8942 16 6 2.4875 1.3063 -4.8298 17 6 0.3506 0.0178 -4.9544 18 6 -0.0488 0.8392 -6.1843 19 7 0.5591 0.2321 -7.3762 20 6 -0.2110 -0.1062 -8.4567 21 1 0.0567 -0.9573 -9.0654 22 6 -1.3358 0.6445 -8.7697 23 7 -1.4844 1.8501 -8.2627 24 14 -2.6388 -0.0561 -9.9103 25 1 -2.2381 -1.4196 -10.3412 26 1 -3.9380 -0.1256 -9.1943 27 1 -2.7763 0.8196 -11.1017 28 6 2.0092 -0.0045 -7.3870 29 6 2.3850 -0.8169 -6.1437 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.1817 1.8214 1.4699 34 1 1.3603 3.0853 3.6020 35 1 2.3639 1.9960 5.5682 36 1 2.9998 -1.5113 3.4431 37 1 1.2952 0.6345 -2.5392 38 1 3.3661 -0.9637 -3.6047 39 1 1.8448 -1.8835 -3.6939 40 1 3.5737 1.2268 -4.7862 41 1 2.1994 1.8699 -5.7172 42 1 2.1249 1.8206 -3.9397 43 1 -0.0850 -0.9789 -5.0255 44 1 -0.0138 0.5112 -4.0534 45 1 0.3096 1.8624 -6.0723 46 1 -1.1339 0.8390 -6.2872 47 1 -2.2702 2.3749 -8.4817 48 1 2.5352 0.9500 -7.3731 49 1 2.2842 -0.5603 -8.2834 50 1 3.4689 -0.9175 -6.0892 51 1 1.9298 -1.8054 -6.2033 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278622858.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:38 Heat of formation + Delta-G solvation = -19.931480 kcal Electronic energy + Delta-G solvation = -30798.414303 eV Core-core repulsion = 26698.703229 eV Total energy + Delta-G solvation = -4099.711074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.23058 -40.10127 -38.89769 -37.99873 -35.15719 -33.50904 -32.65228 -32.34089 -30.90238 -30.33676 -30.03551 -27.19956 -26.94692 -25.19261 -24.26757 -23.85088 -23.04962 -22.33498 -20.89193 -20.42691 -18.84125 -18.23754 -17.82886 -17.12703 -16.60137 -16.35821 -16.15794 -15.82062 -15.20572 -14.88916 -14.79286 -14.38074 -14.28934 -14.11092 -14.00167 -13.74891 -13.54499 -13.38935 -13.36292 -12.89578 -12.72377 -12.68250 -12.55623 -12.13547 -11.96445 -11.60972 -11.52533 -11.37323 -11.27329 -10.84638 -10.76039 -10.62491 -10.28764 -10.24370 -10.21856 -9.98912 -9.93068 -9.88512 -9.58948 -9.46769 -9.11848 -8.81309 -8.51165 -6.65097 -5.85218 -3.30152 0.73891 0.83556 2.24334 2.38699 3.29799 3.32446 3.41104 3.41212 3.43487 4.07916 4.18333 4.32573 4.34737 4.41476 4.45110 4.48990 4.69102 4.82249 4.95559 5.07802 5.09680 5.14749 5.15562 5.34152 5.34939 5.45320 5.58762 5.64703 5.66393 5.68118 5.76308 5.85413 5.99166 5.99875 6.02374 6.06565 6.23891 6.30701 6.40196 6.44926 6.52893 6.61920 6.71033 6.78330 6.81073 6.94996 7.24867 7.33785 7.54068 7.58055 7.77036 8.02046 8.42368 9.16792 9.79211 10.38510 11.23165 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021010 B = 0.002004 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.367508 B =13970.418879 C =14519.150768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.065 3.935 3 H 0.097 0.903 4 O -0.277 6.277 5 C 0.084 3.916 6 C -0.170 4.170 7 C -0.130 4.130 8 C 0.054 3.946 9 N -0.447 5.447 10 C 0.076 3.924 11 C 0.516 3.484 12 O -0.520 6.520 13 N -0.715 5.715 14 C 0.131 3.869 15 C -0.063 4.063 16 C -0.143 4.143 17 C -0.130 4.130 18 C 0.174 3.826 19 N -0.590 5.590 20 C -0.254 4.254 21 H 0.063 0.937 22 C 0.006 3.994 23 N -0.900 5.900 24 Si 0.899 3.101 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.290 1.290 28 C 0.146 3.854 29 C -0.120 4.120 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.158 0.842 36 H 0.165 0.835 37 H 0.402 0.598 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.048 0.952 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.023 0.977 46 H 0.076 0.924 47 H 0.253 0.747 48 H 0.021 0.979 49 H 0.053 0.947 50 H 0.053 0.947 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.780 2.079 20.832 21.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.005 3.995 3 H 0.115 0.885 4 O -0.188 6.188 5 C 0.036 3.964 6 C -0.197 4.197 7 C -0.149 4.149 8 C -0.103 4.103 9 N -0.156 5.156 10 C -0.082 4.082 11 C 0.300 3.700 12 O -0.395 6.395 13 N -0.369 5.369 14 C 0.008 3.992 15 C -0.064 4.064 16 C -0.200 4.200 17 C -0.169 4.169 18 C 0.049 3.951 19 N -0.312 5.312 20 C -0.384 4.384 21 H 0.081 0.919 22 C -0.193 4.193 23 N -0.544 5.544 24 Si 0.729 3.271 25 H -0.202 1.202 26 H -0.216 1.216 27 H -0.217 1.217 28 C 0.019 3.981 29 C -0.160 4.160 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.175 0.825 36 H 0.182 0.818 37 H 0.238 0.762 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.041 0.959 46 H 0.094 0.906 47 H 0.063 0.937 48 H 0.038 0.962 49 H 0.072 0.928 50 H 0.071 0.929 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.511 0.838 21.546 22.524 hybrid contribution -1.524 0.843 -1.438 2.258 sum 4.986 1.680 20.108 20.785 Atomic orbital electron populations 1.22369 0.92212 1.04899 1.04102 1.22277 0.96049 0.96975 0.84197 0.88494 1.86250 1.80545 1.37062 1.14913 1.20269 0.96582 0.91337 0.88210 1.21824 1.03454 0.94186 1.00213 1.22023 0.98819 1.01171 0.92923 1.22700 0.97303 0.91344 0.98906 1.67757 1.14713 1.07572 1.25561 1.22275 0.98958 1.01041 0.85976 1.19901 0.80430 0.85655 0.84053 1.90749 1.39441 1.22915 1.86363 1.45973 1.57638 1.28014 1.05288 1.21605 0.98906 0.95971 0.82732 1.20699 0.97199 0.95280 0.93204 1.21950 0.99598 0.96234 1.02198 1.22259 0.93080 1.01726 0.99855 1.20703 0.98956 0.92523 0.82954 1.43975 1.00769 1.72743 1.13751 1.19169 1.06161 1.07422 1.05678 0.91924 1.25125 1.00835 0.94695 0.98644 1.70043 1.28411 1.08476 1.47443 0.86281 0.81885 0.78650 0.80288 1.20190 1.21567 1.21703 1.20924 0.86554 0.96071 0.94510 1.22005 0.98857 0.99673 0.95462 0.90697 0.89696 0.90287 0.84011 0.84346 0.82459 0.81759 0.76210 0.91665 0.91406 0.93317 0.90575 0.93818 0.92410 0.93785 0.95935 0.90555 0.93732 0.96154 0.92846 0.92881 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 9.11 37.16 0.34 -1.00 16 2 C 0.07 0.61 2.65 -27.89 -0.07 0.54 16 3 H 0.10 0.68 6.42 -51.93 -0.33 0.34 16 4 O -0.28 -3.19 9.36 -39.31 -0.37 -3.56 16 5 C 0.08 0.84 6.60 -39.07 -0.26 0.58 16 6 C -0.17 -1.30 8.28 -39.13 -0.32 -1.63 16 7 C -0.13 -0.86 10.11 -39.47 -0.40 -1.26 16 8 C 0.05 0.42 11.18 -17.54 -0.20 0.22 16 9 N -0.45 -4.56 10.36 -13.12 -0.14 -4.70 16 10 C 0.08 0.78 11.14 -17.38 -0.19 0.58 16 11 C 0.52 6.48 7.18 -10.99 -0.08 6.40 16 12 O -0.52 -8.81 16.51 -14.30 -0.24 -9.05 16 13 N -0.72 -8.04 4.91 -60.30 -0.30 -8.34 16 14 C 0.13 1.71 4.56 -4.05 -0.02 1.70 16 15 C -0.06 -0.90 0.53 -154.47 -0.08 -0.99 16 16 C -0.14 -1.92 7.54 37.16 0.28 -1.64 16 17 C -0.13 -2.14 4.75 -26.61 -0.13 -2.26 16 18 C 0.17 3.76 4.81 -3.71 -0.02 3.74 16 19 N -0.59 -13.81 2.97 -172.32 -0.51 -14.33 16 20 C -0.25 -6.73 9.53 -15.06 -0.14 -6.87 16 21 H 0.06 1.65 7.89 -52.49 -0.41 1.24 16 22 C 0.01 0.17 4.87 -17.43 -0.08 0.08 16 23 N -0.90 -25.15 11.53 55.49 0.64 -24.51 16 24 Si 0.90 21.12 29.59 -169.99 -5.03 16.09 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 C 0.15 2.85 6.05 -3.71 -0.02 2.82 16 29 C -0.12 -1.91 4.91 -26.61 -0.13 -2.04 16 30 H 0.07 0.47 6.80 -51.93 -0.35 0.11 16 31 H 0.08 0.52 7.92 -51.92 -0.41 0.11 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.14 0.79 5.55 -52.49 -0.29 0.50 16 34 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 35 H 0.16 0.79 8.06 -52.48 -0.42 0.36 16 36 H 0.17 1.49 8.06 -52.48 -0.42 1.07 16 37 H 0.40 3.72 5.94 -40.82 -0.24 3.48 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 1.23 4.98 -51.93 -0.26 0.97 16 42 H 0.04 0.50 6.86 -51.93 -0.36 0.14 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.04 0.61 6.82 -51.93 -0.35 0.26 16 45 H 0.02 0.51 6.69 -51.93 -0.35 0.16 16 46 H 0.08 1.89 6.39 -51.93 -0.33 1.56 16 47 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 48 H 0.02 0.40 6.69 -51.93 -0.35 0.05 16 49 H 0.05 1.05 7.94 -51.93 -0.41 0.64 16 50 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 396.70 15.07 5.98 5.98 Total: -1.00 -32.44 396.70 -9.31 -41.75 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.82 Total: 1.66 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -1.53 Total: -1.00 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: -0.30 Total: -51.87 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.60 Total: -12.61 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.44 -9.31 -41.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278622858.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.816 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds