Wall clock time and date at job start Wed Apr 1 2020 04:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47086 * 2 1 4 4 O 1.42899 * 109.46840 * 119.99739 * 2 1 3 5 5 C 1.35908 * 117.00270 * 276.45733 * 4 2 1 6 6 C 1.39147 * 120.47044 * 4.99021 * 5 4 2 7 7 C 1.38535 * 118.37067 * 180.02562 * 6 5 4 8 8 C 1.38254 * 119.22260 * 0.25699 * 7 6 5 9 9 N 1.31847 * 120.88638 * 359.46941 * 8 7 6 10 10 C 1.31839 * 121.77935 * 0.54299 * 9 8 7 11 11 C 1.50693 * 109.47182 * 240.00017 * 2 1 3 12 12 O 1.21277 * 120.00104 * 244.99957 * 11 2 1 13 13 N 1.34780 * 120.00487 * 65.00025 * 11 2 1 14 14 C 1.46490 * 120.00565 * 180.02562 * 13 11 2 15 15 C 1.52996 * 109.47643 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.46154 * 60.02359 * 15 14 13 17 17 C 1.53043 * 109.45792 * 300.07029 * 15 14 13 18 18 C 1.53197 * 109.31565 * 178.61196 * 17 15 14 19 19 N 1.46928 * 108.77344 * 54.63155 * 18 17 15 20 20 C 1.36936 * 120.63143 * 126.41644 * 19 18 17 21 21 H 1.07999 * 120.00104 * 212.19873 * 20 19 18 22 22 C 1.38805 * 119.99899 * 32.19444 * 20 19 18 23 23 N 1.31624 * 120.00076 * 17.12198 * 22 20 19 24 24 Si 1.86801 * 120.00353 * 197.12060 * 22 20 19 25 25 H 1.48509 * 109.46965 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47574 * 119.99845 * 24 22 20 27 27 H 1.48500 * 109.47059 * 240.00485 * 24 22 20 28 28 C 1.46929 * 118.74131 * 306.39403 * 19 18 17 29 29 C 1.53045 * 109.46516 * 180.02562 * 15 14 13 30 30 H 1.09002 * 109.47418 * 300.00187 * 1 2 3 31 31 H 1.09007 * 109.46959 * 60.00114 * 1 2 3 32 32 H 1.08997 * 109.47241 * 180.02562 * 1 2 3 33 33 H 1.07997 * 120.81285 * 359.97438 * 6 5 4 34 34 H 1.08001 * 120.38857 * 179.97438 * 7 6 5 35 35 H 1.08007 * 119.55497 * 179.74456 * 8 7 6 36 36 H 1.08003 * 119.65593 * 179.75121 * 10 9 8 37 37 H 0.97007 * 119.99604 * 359.97438 * 13 11 2 38 38 H 1.09001 * 109.47235 * 299.99820 * 14 13 11 39 39 H 1.09003 * 109.47193 * 59.99608 * 14 13 11 40 40 H 1.09003 * 109.47045 * 60.00010 * 16 15 14 41 41 H 1.08997 * 109.47742 * 180.02562 * 16 15 14 42 42 H 1.09003 * 109.47393 * 300.00738 * 16 15 14 43 43 H 1.09002 * 109.49535 * 298.56141 * 17 15 14 44 44 H 1.08998 * 109.50379 * 58.65758 * 17 15 14 45 45 H 1.08994 * 109.58432 * 294.85233 * 18 17 15 46 46 H 1.08996 * 109.58929 * 174.41712 * 18 17 15 47 47 H 0.96999 * 120.00211 * 179.97438 * 23 22 20 48 48 H 1.09002 * 109.58247 * 293.82364 * 28 19 18 49 49 H 1.08999 * 109.70420 * 173.46446 * 28 19 18 50 50 H 1.08995 * 109.49090 * 301.33652 * 29 15 14 51 51 H 1.08998 * 109.49283 * 61.43179 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0835 0.0549 2.3116 6 6 1.6136 1.3641 2.3478 7 6 1.7144 2.0670 3.5374 8 6 2.2789 1.4516 4.6392 9 7 2.7099 0.2073 4.5727 10 6 2.6324 -0.4958 3.4602 11 6 2.0323 -0.7104 -1.2304 12 8 2.6530 -1.7466 -1.1215 13 7 1.7920 -0.1942 -2.4520 14 6 2.2798 -0.8850 -3.6481 15 6 1.8758 -0.0946 -4.8942 16 6 2.4875 1.3063 -4.8298 17 6 0.3506 0.0178 -4.9544 18 6 -0.0488 0.8392 -6.1843 19 7 0.5591 0.2321 -7.3762 20 6 -0.2110 -0.1062 -8.4567 21 1 0.0567 -0.9573 -9.0654 22 6 -1.3358 0.6445 -8.7697 23 7 -1.4844 1.8501 -8.2627 24 14 -2.6388 -0.0561 -9.9103 25 1 -2.2381 -1.4196 -10.3412 26 1 -3.9380 -0.1256 -9.1943 27 1 -2.7763 0.8196 -11.1017 28 6 2.0092 -0.0045 -7.3870 29 6 2.3850 -0.8169 -6.1437 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.1817 1.8214 1.4699 34 1 1.3603 3.0853 3.6020 35 1 2.3639 1.9960 5.5682 36 1 2.9998 -1.5113 3.4431 37 1 1.2952 0.6345 -2.5392 38 1 3.3661 -0.9637 -3.6047 39 1 1.8448 -1.8835 -3.6939 40 1 3.5737 1.2268 -4.7862 41 1 2.1994 1.8699 -5.7172 42 1 2.1249 1.8206 -3.9397 43 1 -0.0850 -0.9789 -5.0255 44 1 -0.0138 0.5112 -4.0534 45 1 0.3096 1.8624 -6.0723 46 1 -1.1339 0.8390 -6.2872 47 1 -2.2702 2.3749 -8.4817 48 1 2.5352 0.9500 -7.3731 49 1 2.2842 -0.5603 -8.2834 50 1 3.4689 -0.9175 -6.0892 51 1 1.9298 -1.8054 -6.2033 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278622858.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:36 Heat of formation + Delta-G solvation = -39.873034 kcal Electronic energy + Delta-G solvation = -30799.279033 eV Core-core repulsion = 26698.703229 eV Total energy + Delta-G solvation = -4100.575804 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.94983 -41.05778 -40.02878 -38.92668 -36.59814 -34.84865 -33.44616 -33.14978 -32.40861 -31.59042 -31.00161 -28.69343 -28.02286 -26.19593 -25.46909 -24.65999 -24.01536 -23.64936 -22.38921 -21.39515 -19.65831 -19.49855 -18.85201 -18.10750 -17.74331 -17.31615 -16.95927 -16.79264 -16.69907 -16.19630 -15.68185 -15.51626 -15.36367 -15.24591 -15.01928 -14.98442 -14.74297 -14.49316 -14.34237 -14.06160 -13.96844 -13.48201 -13.30971 -13.14563 -13.12347 -12.96612 -12.67676 -12.62406 -12.59792 -12.31931 -12.29918 -12.25522 -11.87974 -11.79559 -11.45507 -11.17498 -11.02700 -10.92943 -10.71644 -10.57591 -10.51071 -10.15284 -9.47075 -8.56460 -7.86655 -5.33762 0.14894 0.23793 1.43927 1.44232 1.47218 1.47544 1.56936 2.48374 2.51311 2.80223 3.27256 3.42519 3.58233 3.63243 3.73672 3.76229 3.79945 3.80586 3.87656 3.91538 3.96447 4.14903 4.31939 4.42098 4.53134 4.58058 4.60177 4.63121 4.72988 4.77513 4.78366 4.85337 4.87130 4.97023 5.02087 5.07860 5.09959 5.12625 5.14671 5.26473 5.32691 5.36406 5.42665 5.45242 5.51925 5.54808 5.69253 5.85393 6.12889 6.43186 6.44646 6.97040 7.09827 7.19301 7.90454 8.42885 9.18506 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021010 B = 0.002004 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.367508 B =13970.418879 C =14519.150768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.068 3.932 3 H 0.129 0.871 4 O -0.304 6.304 5 C 0.068 3.932 6 C -0.167 4.167 7 C -0.121 4.121 8 C 0.047 3.953 9 N -0.474 5.474 10 C 0.052 3.948 11 C 0.515 3.485 12 O -0.570 6.570 13 N -0.703 5.703 14 C 0.142 3.858 15 C -0.052 4.052 16 C -0.138 4.138 17 C -0.117 4.117 18 C 0.182 3.818 19 N -0.608 5.608 20 C -0.263 4.263 21 H 0.057 0.943 22 C -0.043 4.043 23 N -0.928 5.928 24 Si 0.959 3.041 25 H -0.271 1.271 26 H -0.289 1.289 27 H -0.292 1.292 28 C 0.143 3.857 29 C -0.113 4.113 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.168 0.832 34 H 0.175 0.825 35 H 0.183 0.817 36 H 0.158 0.842 37 H 0.415 0.585 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.068 0.932 43 H 0.043 0.957 44 H 0.075 0.925 45 H 0.011 0.989 46 H 0.038 0.962 47 H 0.250 0.750 48 H 0.022 0.978 49 H 0.045 0.955 50 H 0.080 0.920 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.822 3.598 22.331 23.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.008 3.992 3 H 0.146 0.854 4 O -0.216 6.216 5 C 0.021 3.979 6 C -0.194 4.194 7 C -0.140 4.140 8 C -0.110 4.110 9 N -0.184 5.184 10 C -0.106 4.106 11 C 0.301 3.699 12 O -0.448 6.448 13 N -0.357 5.357 14 C 0.018 3.982 15 C -0.053 4.053 16 C -0.195 4.195 17 C -0.156 4.156 18 C 0.056 3.944 19 N -0.332 5.332 20 C -0.394 4.394 21 H 0.075 0.925 22 C -0.240 4.240 23 N -0.573 5.573 24 Si 0.787 3.213 25 H -0.195 1.195 26 H -0.216 1.216 27 H -0.219 1.219 28 C 0.017 3.983 29 C -0.152 4.152 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.079 0.921 33 H 0.185 0.815 34 H 0.192 0.808 35 H 0.200 0.800 36 H 0.175 0.825 37 H 0.253 0.747 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.094 0.906 45 H 0.029 0.971 46 H 0.056 0.944 47 H 0.059 0.941 48 H 0.040 0.960 49 H 0.063 0.937 50 H 0.099 0.901 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.560 2.361 23.047 24.079 hybrid contribution -1.491 0.419 -1.885 2.439 sum 5.069 2.780 21.163 21.938 Atomic orbital electron populations 1.22386 0.90639 1.04310 1.05845 1.22377 0.97034 0.97558 0.82197 0.85380 1.86208 1.81222 1.38420 1.15798 1.20333 0.97667 0.92410 0.87540 1.22152 1.02537 0.93088 1.01578 1.22421 0.97298 1.02463 0.91844 1.23263 0.96515 0.90699 1.00547 1.67744 1.15869 1.08972 1.25766 1.22280 1.00243 1.01316 0.86737 1.20491 0.79353 0.85021 0.85063 1.90730 1.41792 1.25229 1.87095 1.45824 1.57240 1.28146 1.04534 1.21335 0.99081 0.95181 0.82609 1.20552 0.95426 0.96135 0.93191 1.21888 1.00631 0.94967 1.02014 1.22066 0.94829 1.00145 0.98568 1.20540 0.96521 0.92846 0.84469 1.44241 1.02341 1.72888 1.13752 1.19420 1.06729 1.07007 1.06245 0.92531 1.25779 1.02645 0.95066 1.00486 1.70160 1.28756 1.09473 1.48953 0.85347 0.79432 0.78093 0.78390 1.19523 1.21601 1.21925 1.21038 0.84453 0.96574 0.96187 1.21890 1.00549 0.98486 0.94324 0.88966 0.87869 0.92106 0.81503 0.80796 0.79974 0.82460 0.74693 0.91219 0.92679 0.91713 0.93428 0.91329 0.93808 0.90644 0.97070 0.94359 0.94126 0.96005 0.93673 0.90134 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 9.11 71.98 0.66 -1.47 16 2 C 0.07 1.11 2.65 29.85 0.08 1.19 16 3 H 0.13 1.26 6.42 -2.38 -0.02 1.25 16 4 O -0.30 -6.78 9.36 -73.52 -0.69 -7.47 16 5 C 0.07 1.28 6.60 22.60 0.15 1.42 16 6 C -0.17 -2.03 8.28 22.56 0.19 -1.84 16 7 C -0.12 -1.16 10.11 22.34 0.23 -0.94 16 8 C 0.05 0.62 11.18 84.69 0.95 1.57 16 9 N -0.47 -9.41 10.36 -195.44 -2.02 -11.43 16 10 C 0.05 1.07 11.14 84.80 0.94 2.01 16 11 C 0.52 12.03 7.18 87.65 0.63 12.66 16 12 O -0.57 -19.13 16.51 15.97 0.26 -18.86 16 13 N -0.70 -13.86 4.91 -463.09 -2.27 -16.13 16 14 C 0.14 3.39 4.56 86.38 0.39 3.79 16 15 C -0.05 -1.39 0.53 -52.15 -0.03 -1.42 16 16 C -0.14 -3.32 7.54 71.98 0.54 -2.78 16 17 C -0.12 -3.70 4.75 30.67 0.15 -3.55 16 18 C 0.18 7.89 4.81 86.36 0.42 8.30 16 19 N -0.61 -28.90 2.97 -699.09 -2.07 -30.97 16 20 C -0.26 -14.17 9.53 84.03 0.80 -13.37 16 21 H 0.06 3.04 7.89 -2.91 -0.02 3.02 16 22 C -0.04 -2.37 4.87 84.86 0.41 -1.96 16 23 N -0.93 -52.97 11.53 21.65 0.25 -52.72 16 24 Si 0.96 44.09 29.59 68.60 2.03 46.12 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 27 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 28 C 0.14 5.55 6.05 86.36 0.52 6.07 16 29 C -0.11 -3.42 4.91 30.67 0.15 -3.27 16 30 H 0.09 0.82 6.80 -2.39 -0.02 0.81 16 31 H 0.10 0.86 7.92 -2.38 -0.02 0.85 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 33 H 0.17 1.06 5.55 -2.91 -0.02 1.05 16 34 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16 35 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.16 3.16 8.06 -2.91 -0.02 3.13 16 37 H 0.41 6.03 5.94 -92.70 -0.55 5.48 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.05 1.45 4.98 -2.39 -0.01 1.44 16 42 H 0.07 1.30 6.86 -2.39 -0.02 1.29 16 43 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.08 1.89 6.82 -2.39 -0.02 1.88 16 45 H 0.01 0.51 6.69 -2.39 -0.02 0.49 16 46 H 0.04 1.94 6.39 -2.39 -0.02 1.92 16 47 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 48 H 0.02 0.85 6.69 -2.39 -0.02 0.84 16 49 H 0.04 1.79 7.94 -2.39 -0.02 1.77 16 50 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 51 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -74.15 396.70 3.05 -71.10 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.39 Total: 13.96 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 7.18 Total: 6.41 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -6.12 Total: -111.25 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.42 Total: -26.33 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -74.15 3.05 -71.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278622858.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.227 kcal (2) G-P(sol) polarization free energy of solvation -74.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds