Wall clock time and date at job start Wed Apr 1 2020 04:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47730 * 2 1 4 4 O 1.42906 * 109.47266 * 239.99576 * 2 1 3 5 5 C 1.35675 * 116.99390 * 90.00285 * 4 2 1 6 6 C 1.38920 * 119.68204 * 179.97438 * 5 4 2 7 7 C 1.38382 * 119.10993 * 179.74506 * 6 5 4 8 8 C 1.38823 * 118.48456 * 0.54279 * 7 6 5 9 9 C 1.38042 * 119.29129 * 359.45367 * 8 7 6 10 10 N 1.31965 * 120.83520 * 0.28502 * 9 8 7 11 11 C 1.50712 * 109.47025 * 120.00266 * 2 1 3 12 12 O 1.21281 * 120.00046 * 119.99706 * 11 2 1 13 13 N 1.34778 * 119.99532 * 299.99891 * 11 2 1 14 14 C 1.46500 * 119.99530 * 180.02562 * 13 11 2 15 15 C 1.53004 * 109.46854 * 180.02562 * 14 13 11 16 16 C 1.52990 * 109.45969 * 60.02318 * 15 14 13 17 17 C 1.53039 * 109.45671 * 300.06549 * 15 14 13 18 18 C 1.53195 * 109.31147 * 178.61844 * 17 15 14 19 19 N 1.46920 * 108.77729 * 54.63417 * 18 17 15 20 20 C 1.36935 * 120.63539 * 126.41173 * 19 18 17 21 21 H 1.08008 * 119.99724 * 332.61703 * 20 19 18 22 22 C 1.38812 * 120.00293 * 152.60721 * 20 19 18 23 23 N 1.31621 * 119.99930 * 159.35055 * 22 20 19 24 24 Si 1.86798 * 119.99956 * 339.34655 * 22 20 19 25 25 H 1.48503 * 109.47198 * 92.94063 * 24 22 20 26 26 H 1.48500 * 109.47169 * 212.94352 * 24 22 20 27 27 H 1.48507 * 109.47257 * 332.94206 * 24 22 20 28 28 C 1.46928 * 118.73657 * 306.39248 * 19 18 17 29 29 C 1.53037 * 109.45742 * 180.02562 * 15 14 13 30 30 H 1.09001 * 109.46999 * 300.00518 * 1 2 3 31 31 H 1.09002 * 109.46658 * 59.99563 * 1 2 3 32 32 H 1.08996 * 109.47211 * 180.02562 * 1 2 3 33 33 H 1.08001 * 120.44581 * 0.02562 * 6 5 4 34 34 H 1.08003 * 120.75486 * 180.30111 * 7 6 5 35 35 H 1.08004 * 120.35272 * 179.73589 * 8 7 6 36 36 H 1.08005 * 119.58467 * 180.25529 * 9 8 7 37 37 H 0.96995 * 120.00145 * 359.97438 * 13 11 2 38 38 H 1.08998 * 109.47007 * 299.99380 * 14 13 11 39 39 H 1.08993 * 109.47394 * 59.99706 * 14 13 11 40 40 H 1.09004 * 109.47580 * 60.00292 * 16 15 14 41 41 H 1.09003 * 109.46873 * 180.02562 * 16 15 14 42 42 H 1.08997 * 109.47675 * 299.99753 * 16 15 14 43 43 H 1.09001 * 109.50031 * 298.56520 * 17 15 14 44 44 H 1.08996 * 109.50222 * 58.66320 * 17 15 14 45 45 H 1.09003 * 109.58268 * 294.84469 * 18 17 15 46 46 H 1.08999 * 109.58318 * 174.42359 * 18 17 15 47 47 H 0.97002 * 119.99970 * 180.02562 * 23 22 20 48 48 H 1.08997 * 109.58884 * 293.81578 * 28 19 18 49 49 H 1.09001 * 109.70238 * 173.46192 * 28 19 18 50 50 H 1.09005 * 109.49684 * 301.33386 * 29 15 14 51 51 H 1.08992 * 109.50210 * 61.42840 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.2117 0.0829 -2.2741 6 6 2.6748 -0.5149 -3.4395 7 6 2.8751 0.2671 -4.5635 8 6 2.6145 1.6280 -4.4782 9 6 2.1561 2.1546 -3.2873 10 7 1.9696 1.3824 -2.2336 11 6 2.0323 -0.7105 1.2305 12 8 2.7295 -1.6966 1.1192 13 7 1.7067 -0.2500 2.4546 14 6 2.1954 -0.9404 3.6508 15 6 1.6848 -0.2195 4.9000 16 6 0.1549 -0.2213 4.8999 17 6 2.1927 1.2241 4.8990 18 6 1.6513 1.9526 6.1331 19 7 2.0151 1.1858 7.3324 20 6 2.6778 1.7857 8.3697 21 1 3.3146 2.6378 8.1830 22 6 2.5310 1.2987 9.6613 23 7 3.4351 1.5773 10.5764 24 14 1.0502 0.2482 10.1008 25 1 1.3936 -1.1867 9.9317 26 1 0.6646 0.5019 11.5122 27 1 -0.0847 0.5941 9.2077 28 6 1.6541 -0.2370 7.3976 29 6 2.1960 -0.9405 6.1494 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 2.8716 -1.5764 -3.4692 34 1 3.2297 -0.1707 -5.4849 35 1 2.7645 2.2672 -5.3358 36 1 1.9480 3.2121 -3.2169 37 1 1.1494 0.5388 2.5436 38 1 1.8324 -1.9681 3.6509 39 1 3.2854 -0.9400 3.6506 40 1 -0.2073 -1.2494 4.9000 41 1 -0.2091 0.2926 5.7896 42 1 -0.2091 0.2920 4.0099 43 1 3.2824 1.2265 4.9241 44 1 1.8481 1.7304 3.9974 45 1 0.5662 2.0306 6.0645 46 1 2.0885 2.9494 6.1901 47 1 3.3328 1.2367 11.4789 48 1 0.5693 -0.3375 7.4323 49 1 2.0913 -0.6865 8.2892 50 1 1.8537 -1.9753 6.1379 51 1 3.2856 -0.9174 6.1625 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278632002.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:22 Heat of formation + Delta-G solvation = -12.109386 kcal Electronic energy + Delta-G solvation = -30832.338549 eV Core-core repulsion = 26732.966667 eV Total energy + Delta-G solvation = -4099.371882 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.14148 -40.12045 -38.94736 -37.85977 -35.29456 -33.48377 -32.88991 -32.28074 -31.24671 -30.46293 -30.29598 -27.42776 -26.96684 -25.18583 -24.10788 -23.77812 -23.22395 -22.57873 -21.06118 -20.45168 -18.90538 -18.35588 -17.84789 -16.81836 -16.48059 -16.33053 -16.09944 -15.91501 -15.31380 -15.20736 -14.90630 -14.45553 -14.28543 -14.11170 -13.95387 -13.71424 -13.63761 -13.47470 -13.40973 -13.09950 -12.72145 -12.49355 -12.36979 -12.18817 -12.11271 -12.00970 -11.75935 -11.57234 -11.44792 -10.91163 -10.79309 -10.66146 -10.49155 -10.35980 -10.11255 -10.02578 -9.89417 -9.82212 -9.64869 -9.41305 -9.12084 -8.89011 -8.61535 -6.96222 -5.95030 -3.30492 0.75574 0.86174 2.27065 2.46411 3.29716 3.31429 3.39608 3.47426 3.49703 3.86525 4.40832 4.45667 4.52416 4.56504 4.63547 4.69621 4.80324 4.82117 4.86950 4.92841 4.97658 5.06646 5.22184 5.31122 5.33886 5.39241 5.54394 5.55171 5.67409 5.70493 5.76204 5.78724 5.86115 5.89583 5.92532 6.01038 6.05241 6.15877 6.23854 6.28305 6.39064 6.41976 6.50233 6.65007 6.67576 6.69958 6.84553 6.96854 7.33955 7.44766 7.96448 8.05904 8.32879 8.94359 9.72207 10.10180 11.21030 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026475 B = 0.001997 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.354284 B =14019.943065 C =14341.874228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.073 3.927 3 H 0.115 0.885 4 O -0.276 6.276 5 C 0.324 3.676 6 C -0.189 4.189 7 C -0.040 4.040 8 C -0.215 4.215 9 C 0.141 3.859 10 N -0.542 5.542 11 C 0.513 3.487 12 O -0.524 6.524 13 N -0.717 5.717 14 C 0.131 3.869 15 C -0.064 4.064 16 C -0.145 4.145 17 C -0.124 4.124 18 C 0.148 3.852 19 N -0.604 5.604 20 C -0.259 4.259 21 H 0.084 0.916 22 C 0.022 3.978 23 N -0.909 5.909 24 Si 0.883 3.117 25 H -0.289 1.289 26 H -0.304 1.304 27 H -0.271 1.271 28 C 0.127 3.873 29 C -0.121 4.121 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.160 0.840 37 H 0.401 0.599 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.025 0.975 46 H 0.061 0.939 47 H 0.262 0.738 48 H 0.027 0.973 49 H 0.072 0.928 50 H 0.056 0.944 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.447 -1.220 -29.789 30.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.012 3.988 3 H 0.133 0.867 4 O -0.181 6.181 5 C 0.145 3.855 6 C -0.209 4.209 7 C -0.066 4.066 8 C -0.235 4.235 9 C -0.015 4.015 10 N -0.266 5.266 11 C 0.297 3.703 12 O -0.400 6.400 13 N -0.371 5.371 14 C 0.008 3.992 15 C -0.065 4.065 16 C -0.202 4.202 17 C -0.163 4.163 18 C 0.022 3.978 19 N -0.328 5.328 20 C -0.387 4.387 21 H 0.102 0.898 22 C -0.177 4.177 23 N -0.552 5.552 24 Si 0.714 3.286 25 H -0.217 1.217 26 H -0.232 1.232 27 H -0.196 1.196 28 C 0.001 3.999 29 C -0.161 4.161 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.177 0.823 37 H 0.237 0.763 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.042 0.958 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.045 0.955 49 H 0.090 0.910 50 H 0.075 0.925 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.144 -1.869 -28.833 29.540 hybrid contribution -0.765 -0.412 -0.280 0.913 sum -6.909 -2.281 -29.114 30.009 Atomic orbital electron populations 1.22168 0.92375 1.03700 1.03871 1.22100 0.95747 0.98111 0.82810 0.86706 1.86388 1.79796 1.34362 1.17602 1.19908 0.91097 0.87423 0.87044 1.21111 1.06093 1.02349 0.91380 1.21437 0.94020 0.93457 0.97661 1.21996 1.05280 0.96212 1.00040 1.22443 0.92499 0.99247 0.87300 1.67265 1.21997 1.04701 1.32670 1.20172 0.80854 0.84947 0.84307 1.90739 1.37001 1.25665 1.86557 1.45964 1.53710 1.32288 1.05130 1.21565 0.99323 0.95788 0.82524 1.20699 0.95774 0.96372 0.93653 1.21974 0.94658 1.01590 1.02004 1.22077 1.01338 0.94214 0.98687 1.20944 0.96478 0.94610 0.85735 1.44322 1.67470 1.04012 1.17015 1.18915 1.20185 1.14663 0.84930 0.89790 1.25285 0.97936 0.98798 0.95654 1.69841 1.33426 1.48010 1.03879 0.86943 0.85475 0.79590 0.76600 1.21652 1.23240 1.19639 1.21347 0.96901 0.85366 0.96264 1.22012 1.01467 0.97862 0.94769 0.90242 0.90782 0.91178 0.83932 0.84093 0.84498 0.82252 0.76265 0.91484 0.91271 0.92923 0.91035 0.93440 0.91621 0.93072 0.95761 0.92021 0.92800 0.95476 0.91015 0.92535 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.43 37.16 0.35 -1.00 16 2 C 0.07 0.78 2.91 -27.88 -0.08 0.70 16 3 H 0.12 1.17 6.98 -51.93 -0.36 0.80 16 4 O -0.28 -3.46 9.29 -38.63 -0.36 -3.82 16 5 C 0.32 3.51 7.45 -17.12 -0.13 3.38 16 6 C -0.19 -1.63 10.04 -39.28 -0.39 -2.03 16 7 C -0.04 -0.25 10.17 -39.31 -0.40 -0.65 16 8 C -0.21 -1.24 10.10 -39.44 -0.40 -1.64 16 9 C 0.14 1.00 11.18 -17.57 -0.20 0.80 16 10 N -0.54 -5.33 8.65 -13.33 -0.12 -5.44 16 11 C 0.51 6.77 7.23 -10.98 -0.08 6.69 16 12 O -0.52 -9.16 16.50 -14.35 -0.24 -9.39 16 13 N -0.72 -8.15 4.84 -60.29 -0.29 -8.44 16 14 C 0.13 1.72 4.56 -4.04 -0.02 1.70 16 15 C -0.06 -0.90 0.53 -154.47 -0.08 -0.98 16 16 C -0.15 -1.84 7.54 37.15 0.28 -1.56 16 17 C -0.12 -1.84 4.75 -26.61 -0.13 -1.96 16 18 C 0.15 2.72 6.05 -3.71 -0.02 2.69 16 19 N -0.60 -13.78 2.77 -172.32 -0.48 -14.25 16 20 C -0.26 -7.10 10.04 -15.06 -0.15 -7.25 16 21 H 0.08 2.47 8.06 -52.48 -0.42 2.05 16 22 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 23 N -0.91 -27.75 13.97 55.49 0.78 -26.97 16 24 Si 0.88 22.16 24.35 -169.99 -4.14 18.03 16 25 H -0.29 -7.01 6.62 56.52 0.37 -6.63 16 26 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 27 H -0.27 -6.63 6.64 56.52 0.38 -6.25 16 28 C 0.13 2.65 3.73 -3.71 -0.01 2.64 16 29 C -0.12 -2.04 4.91 -26.61 -0.13 -2.17 16 30 H 0.08 0.51 7.57 -51.93 -0.39 0.12 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.14 0.47 8.06 -52.48 -0.42 0.05 16 35 H 0.14 0.42 8.06 -52.48 -0.42 0.00 16 36 H 0.16 0.68 8.06 -52.48 -0.42 0.26 16 37 H 0.40 3.67 5.57 -40.82 -0.23 3.44 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 1.06 4.98 -51.93 -0.26 0.80 16 42 H 0.05 0.49 6.86 -51.93 -0.36 0.13 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 0.61 6.82 -51.93 -0.35 0.26 16 45 H 0.02 0.43 6.69 -51.93 -0.35 0.08 16 46 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 47 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 48 H 0.03 0.56 5.63 -51.93 -0.29 0.27 16 49 H 0.07 1.68 4.50 -51.93 -0.23 1.45 16 50 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 51 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 393.84 15.07 5.94 5.94 Total: -1.00 -34.35 393.84 -8.51 -42.87 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -7.92 Total: 1.60 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -1.68 Total: -0.10 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.11 Total: -55.11 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.60 Total: -13.22 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.14 Total: 18.03 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.35 -8.51 -42.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278632002.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.757 kcal (2) G-P(sol) polarization free energy of solvation -34.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds