Wall clock time and date at job start Wed Apr 1 2020 04:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47730 * 2 1 4 4 O 1.42906 * 109.47266 * 239.99576 * 2 1 3 5 5 C 1.35675 * 116.99390 * 90.00285 * 4 2 1 6 6 C 1.38920 * 119.68204 * 179.97438 * 5 4 2 7 7 C 1.38382 * 119.10993 * 179.74506 * 6 5 4 8 8 C 1.38823 * 118.48456 * 0.54279 * 7 6 5 9 9 C 1.38042 * 119.29129 * 359.45367 * 8 7 6 10 10 N 1.31965 * 120.83520 * 0.28502 * 9 8 7 11 11 C 1.50712 * 109.47025 * 120.00266 * 2 1 3 12 12 O 1.21281 * 120.00046 * 119.99706 * 11 2 1 13 13 N 1.34778 * 119.99532 * 299.99891 * 11 2 1 14 14 C 1.46500 * 119.99530 * 180.02562 * 13 11 2 15 15 C 1.53004 * 109.46854 * 180.02562 * 14 13 11 16 16 C 1.52990 * 109.45969 * 60.02318 * 15 14 13 17 17 C 1.53039 * 109.45671 * 300.06549 * 15 14 13 18 18 C 1.53195 * 109.31147 * 178.61844 * 17 15 14 19 19 N 1.46920 * 108.77729 * 54.63417 * 18 17 15 20 20 C 1.36935 * 120.63539 * 126.41173 * 19 18 17 21 21 H 1.08008 * 119.99724 * 332.61703 * 20 19 18 22 22 C 1.38812 * 120.00293 * 152.60721 * 20 19 18 23 23 N 1.31621 * 119.99930 * 159.35055 * 22 20 19 24 24 Si 1.86798 * 119.99956 * 339.34655 * 22 20 19 25 25 H 1.48503 * 109.47198 * 92.94063 * 24 22 20 26 26 H 1.48500 * 109.47169 * 212.94352 * 24 22 20 27 27 H 1.48507 * 109.47257 * 332.94206 * 24 22 20 28 28 C 1.46928 * 118.73657 * 306.39248 * 19 18 17 29 29 C 1.53037 * 109.45742 * 180.02562 * 15 14 13 30 30 H 1.09001 * 109.46999 * 300.00518 * 1 2 3 31 31 H 1.09002 * 109.46658 * 59.99563 * 1 2 3 32 32 H 1.08996 * 109.47211 * 180.02562 * 1 2 3 33 33 H 1.08001 * 120.44581 * 0.02562 * 6 5 4 34 34 H 1.08003 * 120.75486 * 180.30111 * 7 6 5 35 35 H 1.08004 * 120.35272 * 179.73589 * 8 7 6 36 36 H 1.08005 * 119.58467 * 180.25529 * 9 8 7 37 37 H 0.96995 * 120.00145 * 359.97438 * 13 11 2 38 38 H 1.08998 * 109.47007 * 299.99380 * 14 13 11 39 39 H 1.08993 * 109.47394 * 59.99706 * 14 13 11 40 40 H 1.09004 * 109.47580 * 60.00292 * 16 15 14 41 41 H 1.09003 * 109.46873 * 180.02562 * 16 15 14 42 42 H 1.08997 * 109.47675 * 299.99753 * 16 15 14 43 43 H 1.09001 * 109.50031 * 298.56520 * 17 15 14 44 44 H 1.08996 * 109.50222 * 58.66320 * 17 15 14 45 45 H 1.09003 * 109.58268 * 294.84469 * 18 17 15 46 46 H 1.08999 * 109.58318 * 174.42359 * 18 17 15 47 47 H 0.97002 * 119.99970 * 180.02562 * 23 22 20 48 48 H 1.08997 * 109.58884 * 293.81578 * 28 19 18 49 49 H 1.09001 * 109.70238 * 173.46192 * 28 19 18 50 50 H 1.09005 * 109.49684 * 301.33386 * 29 15 14 51 51 H 1.08992 * 109.50210 * 61.42840 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.2117 0.0829 -2.2741 6 6 2.6748 -0.5149 -3.4395 7 6 2.8751 0.2671 -4.5635 8 6 2.6145 1.6280 -4.4782 9 6 2.1561 2.1546 -3.2873 10 7 1.9696 1.3824 -2.2336 11 6 2.0323 -0.7105 1.2305 12 8 2.7295 -1.6966 1.1192 13 7 1.7067 -0.2500 2.4546 14 6 2.1954 -0.9404 3.6508 15 6 1.6848 -0.2195 4.9000 16 6 0.1549 -0.2213 4.8999 17 6 2.1927 1.2241 4.8990 18 6 1.6513 1.9526 6.1331 19 7 2.0151 1.1858 7.3324 20 6 2.6778 1.7857 8.3697 21 1 3.3146 2.6378 8.1830 22 6 2.5310 1.2987 9.6613 23 7 3.4351 1.5773 10.5764 24 14 1.0502 0.2482 10.1008 25 1 1.3936 -1.1867 9.9317 26 1 0.6646 0.5019 11.5122 27 1 -0.0847 0.5941 9.2077 28 6 1.6541 -0.2370 7.3976 29 6 2.1960 -0.9405 6.1494 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 2.8716 -1.5764 -3.4692 34 1 3.2297 -0.1707 -5.4849 35 1 2.7645 2.2672 -5.3358 36 1 1.9480 3.2121 -3.2169 37 1 1.1494 0.5388 2.5436 38 1 1.8324 -1.9681 3.6509 39 1 3.2854 -0.9400 3.6506 40 1 -0.2073 -1.2494 4.9000 41 1 -0.2091 0.2926 5.7896 42 1 -0.2091 0.2920 4.0099 43 1 3.2824 1.2265 4.9241 44 1 1.8481 1.7304 3.9974 45 1 0.5662 2.0306 6.0645 46 1 2.0885 2.9494 6.1901 47 1 3.3328 1.2367 11.4789 48 1 0.5693 -0.3375 7.4323 49 1 2.0913 -0.6865 8.2892 50 1 1.8537 -1.9753 6.1379 51 1 3.2856 -0.9174 6.1625 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278632002.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:21 Heat of formation + Delta-G solvation = -35.967681 kcal Electronic energy + Delta-G solvation = -30833.373122 eV Core-core repulsion = 26732.966667 eV Total energy + Delta-G solvation = -4100.406456 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.86780 -41.11029 -40.12041 -38.71636 -36.74985 -34.84990 -33.58835 -33.38148 -32.70272 -31.92090 -30.95276 -28.88055 -28.01535 -26.13500 -25.41965 -24.61239 -24.31432 -23.62235 -22.61761 -21.44166 -19.78088 -19.56408 -18.91529 -18.22281 -17.50685 -17.31142 -17.00441 -16.72998 -16.71321 -16.20650 -15.94877 -15.68860 -15.47175 -15.40310 -15.10168 -14.98450 -14.64722 -14.43372 -14.21597 -14.07597 -13.98612 -13.90866 -13.57933 -13.38603 -13.17078 -12.90897 -12.85712 -12.77721 -12.41348 -12.25433 -12.20152 -12.17722 -12.10783 -11.68666 -11.54186 -11.21692 -11.12103 -10.94939 -10.86259 -10.64498 -10.58412 -10.17408 -9.49308 -8.87403 -8.15149 -5.45669 0.20810 0.32880 1.30993 1.41380 1.42527 1.49672 1.51241 2.43002 2.45994 2.83312 3.07270 3.28941 3.38869 3.54760 3.71541 3.78345 3.84619 3.86938 3.99292 4.06458 4.12771 4.23846 4.29772 4.37157 4.38403 4.50604 4.56297 4.66910 4.67746 4.71498 4.74653 4.75874 4.81296 4.84183 4.94060 5.04138 5.05253 5.07606 5.10120 5.18879 5.24523 5.28715 5.30139 5.35460 5.40175 5.53589 5.62777 5.89155 6.14449 6.16893 6.43085 6.85715 6.95239 7.09441 7.66114 8.06186 9.04952 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026475 B = 0.001997 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.354284 B =14019.943065 C =14341.874228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.077 3.923 3 H 0.121 0.879 4 O -0.304 6.304 5 C 0.293 3.707 6 C -0.206 4.206 7 C -0.038 4.038 8 C -0.205 4.205 9 C 0.127 3.873 10 N -0.559 5.559 11 C 0.513 3.487 12 O -0.573 6.573 13 N -0.701 5.701 14 C 0.141 3.859 15 C -0.054 4.054 16 C -0.143 4.143 17 C -0.115 4.115 18 C 0.143 3.857 19 N -0.619 5.619 20 C -0.245 4.245 21 H 0.048 0.952 22 C -0.040 4.040 23 N -0.960 5.960 24 Si 0.949 3.051 25 H -0.277 1.277 26 H -0.314 1.314 27 H -0.255 1.255 28 C 0.123 3.877 29 C -0.118 4.118 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.143 0.857 34 H 0.172 0.828 35 H 0.170 0.830 36 H 0.186 0.814 37 H 0.416 0.584 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.089 0.911 45 H 0.047 0.953 46 H 0.050 0.950 47 H 0.260 0.740 48 H 0.042 0.958 49 H 0.042 0.958 50 H 0.080 0.920 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.855 -1.045 -33.211 34.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.017 3.983 3 H 0.139 0.861 4 O -0.211 6.211 5 C 0.115 3.885 6 C -0.227 4.227 7 C -0.063 4.063 8 C -0.225 4.225 9 C -0.028 4.028 10 N -0.283 5.283 11 C 0.299 3.701 12 O -0.452 6.452 13 N -0.356 5.356 14 C 0.017 3.983 15 C -0.055 4.055 16 C -0.200 4.200 17 C -0.154 4.154 18 C 0.018 3.982 19 N -0.344 5.344 20 C -0.374 4.374 21 H 0.066 0.934 22 C -0.235 4.235 23 N -0.607 5.607 24 Si 0.778 3.222 25 H -0.204 1.204 26 H -0.243 1.243 27 H -0.179 1.179 28 C -0.002 4.002 29 C -0.157 4.157 30 H 0.122 0.878 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.160 0.840 34 H 0.189 0.811 35 H 0.188 0.812 36 H 0.203 0.797 37 H 0.254 0.746 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.063 0.937 44 H 0.108 0.892 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.098 0.902 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.598 -1.670 -32.312 33.478 hybrid contribution 0.080 -0.354 0.622 0.720 sum -8.518 -2.025 -31.690 32.877 Atomic orbital electron populations 1.22151 0.90303 1.03659 1.05187 1.22123 0.97146 0.97540 0.81479 0.86124 1.86339 1.80633 1.35651 1.18448 1.20159 0.93093 0.88107 0.87120 1.21347 1.06650 1.02872 0.91809 1.21854 0.92906 0.93676 0.97849 1.22409 1.03193 0.96359 1.00508 1.23028 0.92255 1.00285 0.87262 1.67225 1.22591 1.04458 1.34017 1.20659 0.79876 0.84281 0.85265 1.90716 1.39248 1.27966 1.87253 1.45780 1.53262 1.32343 1.04179 1.21311 0.98352 0.95960 0.82635 1.20565 0.97136 0.95214 0.92556 1.21957 0.92710 1.02650 1.02677 1.21973 1.00035 0.94896 0.98489 1.21155 0.97753 0.94077 0.85182 1.44457 1.67493 1.05319 1.17099 1.18861 1.19003 1.13208 0.86373 0.93380 1.25942 1.00487 1.01312 0.95723 1.69984 1.35518 1.50894 1.04272 0.85874 0.82122 0.78531 0.75687 1.20424 1.24334 1.17944 1.21384 0.97491 0.84299 0.97011 1.21920 1.00320 0.99141 0.94341 0.87833 0.90472 0.91858 0.83963 0.81078 0.81246 0.79682 0.74558 0.91272 0.92967 0.91804 0.92702 0.90375 0.93684 0.89236 0.93539 0.93174 0.93122 0.94036 0.93953 0.90189 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.43 71.98 0.68 -1.55 16 2 C 0.08 1.57 2.91 29.85 0.09 1.66 16 3 H 0.12 2.27 6.98 -2.39 -0.02 2.26 16 4 O -0.30 -7.66 9.29 -70.88 -0.66 -8.32 16 5 C 0.29 6.23 7.45 84.79 0.63 6.86 16 6 C -0.21 -3.44 10.04 22.47 0.23 -3.21 16 7 C -0.04 -0.38 10.17 22.44 0.23 -0.15 16 8 C -0.20 -1.71 10.10 22.36 0.23 -1.48 16 9 C 0.13 1.49 11.18 84.63 0.95 2.44 16 10 N -0.56 -10.23 8.65 -308.95 -2.67 -12.90 16 11 C 0.51 12.92 7.23 87.66 0.63 13.56 16 12 O -0.57 -20.05 16.50 16.00 0.26 -19.79 16 13 N -0.70 -14.08 4.84 -463.05 -2.24 -16.32 16 14 C 0.14 3.40 4.56 86.38 0.39 3.80 16 15 C -0.05 -1.37 0.53 -52.16 -0.03 -1.40 16 16 C -0.14 -3.01 7.54 71.98 0.54 -2.46 16 17 C -0.12 -3.15 4.75 30.67 0.15 -3.01 16 18 C 0.14 5.01 6.05 86.36 0.52 5.54 16 19 N -0.62 -28.01 2.77 -699.09 -1.94 -29.94 16 20 C -0.24 -13.81 10.04 84.03 0.84 -12.97 16 21 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 22 C -0.04 -2.37 5.23 84.86 0.44 -1.93 16 23 N -0.96 -61.02 13.97 21.65 0.30 -60.71 16 24 Si 0.95 46.46 24.35 68.60 1.67 48.13 16 25 H -0.28 -12.92 6.62 99.48 0.66 -12.26 16 26 H -0.31 -15.77 7.11 99.48 0.71 -15.06 16 27 H -0.26 -11.67 6.64 99.48 0.66 -11.01 16 28 C 0.12 4.98 3.73 86.36 0.32 5.30 16 29 C -0.12 -3.77 4.91 30.67 0.15 -3.62 16 30 H 0.10 0.93 7.57 -2.39 -0.02 0.91 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 34 H 0.17 0.57 8.06 -2.91 -0.02 0.54 16 35 H 0.17 0.28 8.06 -2.91 -0.02 0.25 16 36 H 0.19 1.02 8.06 -2.91 -0.02 0.99 16 37 H 0.42 5.87 5.57 -92.71 -0.52 5.35 16 38 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.06 1.24 8.14 -2.38 -0.02 1.23 16 41 H 0.05 1.38 4.98 -2.39 -0.01 1.37 16 42 H 0.08 1.17 6.86 -2.39 -0.02 1.16 16 43 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.09 1.79 6.82 -2.39 -0.02 1.77 16 45 H 0.05 1.47 6.69 -2.39 -0.02 1.46 16 46 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16 47 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 48 H 0.04 1.59 5.63 -2.39 -0.01 1.57 16 49 H 0.04 1.96 4.50 -2.39 -0.01 1.95 16 50 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 51 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -79.61 393.84 2.05 -77.55 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.33 Total: 14.94 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 6.99 Total: 7.37 kcal Atomic # 7 Polarization: -113.34 SS G_CDS: -6.55 Total: -119.88 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.39 Total: -28.11 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.67 Total: 48.13 kcal Total: -79.61 2.05 -77.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278632002.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.587 kcal (2) G-P(sol) polarization free energy of solvation -79.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds