Wall clock time and date at job start Wed Apr 1 2020 04:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47538 * 2 1 4 4 O 1.42905 * 109.47089 * 119.99978 * 2 1 3 5 5 C 1.35674 * 117.00053 * 270.00282 * 4 2 1 6 6 C 1.38913 * 119.68647 * 179.97438 * 5 4 2 7 7 C 1.38384 * 119.11534 * 179.97438 * 6 5 4 8 8 C 1.38835 * 118.47997 * 0.02562 * 7 6 5 9 9 C 1.38046 * 119.28946 * 0.25330 * 8 7 6 10 10 N 1.31967 * 120.83666 * 359.44834 * 9 8 7 11 11 C 1.50702 * 109.47027 * 239.99861 * 2 1 3 12 12 O 1.21276 * 119.99747 * 245.00259 * 11 2 1 13 13 N 1.34777 * 119.99983 * 64.99904 * 11 2 1 14 14 C 1.46501 * 119.99699 * 179.97438 * 13 11 2 15 15 C 1.52996 * 109.46698 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.46104 * 60.03237 * 15 14 13 17 17 C 1.53038 * 109.46456 * 300.07382 * 15 14 13 18 18 C 1.53198 * 109.31231 * 178.61543 * 17 15 14 19 19 N 1.46922 * 108.77758 * 54.63579 * 18 17 15 20 20 C 1.36930 * 120.63565 * 126.41206 * 19 18 17 21 21 H 1.08004 * 120.00227 * 207.66451 * 20 19 18 22 22 C 1.38816 * 120.00025 * 27.66177 * 20 19 18 23 23 N 1.31619 * 119.99568 * 17.36377 * 22 20 19 24 24 Si 1.86794 * 120.00185 * 197.36990 * 22 20 19 25 25 H 1.48498 * 109.47382 * 59.99716 * 24 22 20 26 26 H 1.48506 * 109.47131 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47192 * 299.99878 * 24 22 20 28 28 C 1.46933 * 118.73475 * 306.38857 * 19 18 17 29 29 C 1.53042 * 109.46007 * 180.02562 * 15 14 13 30 30 H 1.09000 * 109.47015 * 60.00071 * 1 2 3 31 31 H 1.08998 * 109.47538 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47247 * 300.00426 * 1 2 3 33 33 H 1.08003 * 120.44393 * 0.02562 * 6 5 4 34 34 H 1.07994 * 120.76001 * 180.02562 * 7 6 5 35 35 H 1.07997 * 120.35166 * 179.97438 * 8 7 6 36 36 H 1.08000 * 119.57763 * 179.72905 * 9 8 7 37 37 H 0.96998 * 119.99646 * 0.02562 * 13 11 2 38 38 H 1.08994 * 109.47472 * 300.00481 * 14 13 11 39 39 H 1.09002 * 109.46835 * 60.00978 * 14 13 11 40 40 H 1.08999 * 109.47100 * 59.99693 * 16 15 14 41 41 H 1.08997 * 109.47369 * 179.97438 * 16 15 14 42 42 H 1.09007 * 109.47047 * 300.00179 * 16 15 14 43 43 H 1.08997 * 109.49801 * 298.56386 * 17 15 14 44 44 H 1.09000 * 109.49984 * 58.66211 * 17 15 14 45 45 H 1.08999 * 109.58613 * 294.84400 * 18 17 15 46 46 H 1.08997 * 109.58289 * 174.41824 * 18 17 15 47 47 H 0.97004 * 120.00041 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.58590 * 293.82133 * 28 19 18 49 49 H 1.09003 * 109.70413 * 173.46434 * 28 19 18 50 50 H 1.09010 * 109.49495 * 301.33967 * 29 15 14 51 51 H 1.08997 * 109.49761 * 61.43516 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2116 0.0829 2.2742 6 6 2.6736 -0.5150 3.4399 7 6 2.8794 0.2679 4.5622 8 6 2.6138 1.6281 4.4784 9 6 2.1510 2.1538 3.2889 10 7 1.9699 1.3825 2.2335 11 6 2.0323 -0.7105 -1.2305 12 8 2.6529 -1.7467 -1.1214 13 7 1.7919 -0.1942 -2.4520 14 6 2.2807 -0.8847 -3.6481 15 6 1.8763 -0.0942 -4.8941 16 6 2.4871 1.3071 -4.8293 17 6 0.3512 0.0170 -4.9548 18 6 -0.0484 0.8384 -6.1847 19 7 0.5603 0.2319 -7.3765 20 6 -0.2093 -0.1069 -8.4573 21 1 0.0986 -0.9116 -9.1085 22 6 -1.3852 0.5839 -8.7160 23 7 -1.5963 1.7563 -8.1563 24 14 -2.6679 -0.1504 -9.8581 25 1 -3.1293 -1.4522 -9.3127 26 1 -3.8226 0.7772 -9.9673 27 1 -2.0721 -0.3600 -11.2021 28 6 2.0105 -0.0037 -7.3868 29 6 2.3865 -0.8159 -6.1436 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 2.8704 -1.5765 3.4696 34 1 3.2384 -0.1691 5.4823 35 1 2.7634 2.2672 5.3361 36 1 1.9387 3.2104 3.2198 37 1 1.2958 0.6347 -2.5391 38 1 3.3669 -0.9625 -3.6043 39 1 1.8463 -1.8833 -3.6942 40 1 3.5733 1.2283 -4.7855 41 1 2.1995 1.8702 -5.7171 42 1 2.1239 1.8209 -3.9392 43 1 -0.0837 -0.9799 -5.0261 44 1 -0.0138 0.5101 -4.0538 45 1 0.3092 1.8619 -6.0725 46 1 -1.1334 0.8373 -6.2879 47 1 -2.4179 2.2393 -8.3373 48 1 2.5359 0.9512 -7.3726 49 1 2.2863 -0.5592 -8.2832 50 1 3.4706 -0.9158 -6.0888 51 1 1.9321 -1.8049 -6.2035 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278632003.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:27 Heat of formation + Delta-G solvation = -18.271609 kcal Electronic energy + Delta-G solvation = -30809.627279 eV Core-core repulsion = 26709.988183 eV Total energy + Delta-G solvation = -4099.639096 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.07987 -39.99780 -38.73587 -37.74864 -35.07501 -33.39995 -32.84845 -32.23561 -30.86399 -30.23949 -29.93519 -27.13388 -26.83586 -25.09316 -24.14706 -23.77530 -22.97781 -22.26365 -20.82240 -20.31891 -18.83192 -18.14725 -17.75040 -16.73074 -16.43066 -16.24358 -16.00502 -15.77237 -15.18680 -14.88626 -14.81492 -14.29870 -14.15789 -13.97522 -13.74265 -13.53171 -13.47035 -13.45075 -13.21796 -12.81329 -12.63684 -12.57081 -12.32226 -12.05614 -11.99683 -11.48831 -11.37659 -11.30257 -11.18761 -10.77086 -10.71012 -10.55314 -10.31854 -10.22036 -10.20978 -9.97987 -9.83301 -9.78057 -9.51417 -9.42826 -9.00477 -8.83975 -8.44728 -6.65999 -5.79528 -3.20647 0.79793 0.90436 2.35663 2.54242 3.38069 3.38360 3.43771 3.45406 3.45643 3.91888 4.47939 4.49525 4.53096 4.65093 4.70898 4.75185 4.86401 4.89500 5.04158 5.15733 5.21728 5.32879 5.37762 5.40027 5.45027 5.51255 5.59621 5.75746 5.82456 5.83199 5.84810 5.93263 6.05921 6.07741 6.09438 6.13363 6.30160 6.40486 6.47438 6.53510 6.59465 6.68759 6.77246 6.86455 6.90735 6.99294 7.35267 7.44394 7.51019 7.65627 7.79340 8.15535 8.44861 9.21493 9.85141 10.41672 11.28891 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021220 B = 0.002017 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.221159 B =13881.217648 C =14337.419493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.073 3.927 3 H 0.113 0.887 4 O -0.276 6.276 5 C 0.325 3.675 6 C -0.189 4.189 7 C -0.040 4.040 8 C -0.216 4.216 9 C 0.141 3.859 10 N -0.542 5.542 11 C 0.513 3.487 12 O -0.527 6.527 13 N -0.715 5.715 14 C 0.131 3.869 15 C -0.064 4.064 16 C -0.142 4.142 17 C -0.130 4.130 18 C 0.171 3.829 19 N -0.591 5.591 20 C -0.251 4.251 21 H 0.064 0.936 22 C 0.001 3.999 23 N -0.903 5.903 24 Si 0.901 3.099 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.283 1.283 28 C 0.146 3.854 29 C -0.120 4.120 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.160 0.840 37 H 0.403 0.597 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.075 0.925 42 H 0.044 0.956 43 H 0.056 0.944 44 H 0.044 0.956 45 H 0.021 0.979 46 H 0.086 0.914 47 H 0.254 0.746 48 H 0.021 0.979 49 H 0.052 0.948 50 H 0.052 0.948 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.792 1.055 24.173 25.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.013 3.987 3 H 0.131 0.869 4 O -0.181 6.181 5 C 0.146 3.854 6 C -0.210 4.210 7 C -0.066 4.066 8 C -0.236 4.236 9 C -0.015 4.015 10 N -0.266 5.266 11 C 0.297 3.703 12 O -0.403 6.403 13 N -0.369 5.369 14 C 0.008 3.992 15 C -0.064 4.064 16 C -0.200 4.200 17 C -0.169 4.169 18 C 0.045 3.955 19 N -0.314 5.314 20 C -0.381 4.381 21 H 0.082 0.918 22 C -0.197 4.197 23 N -0.548 5.548 24 Si 0.731 3.269 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.209 1.209 28 C 0.019 3.981 29 C -0.160 4.160 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.177 0.823 37 H 0.239 0.761 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.039 0.961 46 H 0.104 0.896 47 H 0.063 0.937 48 H 0.038 0.962 49 H 0.071 0.929 50 H 0.071 0.929 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.832 0.472 23.352 24.635 hybrid contribution -0.721 -0.081 0.136 0.738 sum 7.111 0.391 23.488 24.544 Atomic orbital electron populations 1.22168 0.92168 1.03832 1.03999 1.22107 0.95934 0.97944 0.82730 0.86885 1.86390 1.79732 1.34394 1.17632 1.19922 0.91007 0.87405 0.87088 1.21109 1.06156 1.02314 0.91416 1.21431 0.94082 0.93442 0.97635 1.21992 1.05349 0.96235 1.00045 1.22445 0.92494 0.99254 0.87288 1.67280 1.21953 1.04738 1.32637 1.20159 0.80226 0.85557 0.84339 1.90723 1.39877 1.23137 1.86540 1.45975 1.57631 1.28012 1.05284 1.21582 0.98784 0.95952 0.82878 1.20701 0.97289 0.95261 0.93164 1.21948 0.99538 0.96254 1.02222 1.22259 0.92986 1.01706 0.99972 1.20797 0.99753 0.92277 0.82648 1.44018 1.00777 1.72641 1.13921 1.19145 1.03057 1.11247 1.04604 0.91805 1.25014 1.00473 0.95098 0.99116 1.70018 1.26019 1.11692 1.47068 0.86385 0.81356 0.78407 0.80714 1.21095 1.21687 1.20923 1.20911 0.86492 0.96100 0.94548 1.22002 0.98804 0.99667 0.95501 0.90004 0.91128 0.90814 0.83943 0.84128 0.84537 0.82276 0.76130 0.91810 0.91516 0.93389 0.90651 0.93698 0.92485 0.93700 0.96085 0.89621 0.93651 0.96151 0.92913 0.92925 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.49 37.16 0.35 -1.29 16 2 C 0.07 0.87 2.90 -27.88 -0.08 0.79 16 3 H 0.11 1.24 6.98 -51.93 -0.36 0.88 16 4 O -0.28 -3.68 9.30 -38.58 -0.36 -4.04 16 5 C 0.32 3.71 7.45 -17.12 -0.13 3.58 16 6 C -0.19 -1.73 10.04 -39.28 -0.39 -2.12 16 7 C -0.04 -0.27 10.17 -39.31 -0.40 -0.67 16 8 C -0.22 -1.33 10.11 -39.43 -0.40 -1.73 16 9 C 0.14 1.07 11.18 -17.56 -0.20 0.87 16 10 N -0.54 -5.66 8.65 -13.33 -0.12 -5.77 16 11 C 0.51 7.32 7.18 -10.98 -0.08 7.24 16 12 O -0.53 -9.62 16.51 -14.30 -0.24 -9.86 16 13 N -0.72 -9.16 4.91 -60.30 -0.30 -9.46 16 14 C 0.13 1.87 4.56 -4.04 -0.02 1.85 16 15 C -0.06 -0.97 0.53 -154.47 -0.08 -1.05 16 16 C -0.14 -2.05 7.54 37.16 0.28 -1.77 16 17 C -0.13 -2.27 4.75 -26.61 -0.13 -2.40 16 18 C 0.17 3.82 4.84 -3.71 -0.02 3.81 16 19 N -0.59 -14.19 2.99 -172.31 -0.52 -14.71 16 20 C -0.25 -6.74 9.59 -15.06 -0.14 -6.89 16 21 H 0.06 1.70 7.89 -52.48 -0.41 1.28 16 22 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 23 N -0.90 -25.62 11.19 55.49 0.62 -25.00 16 24 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 C 0.15 2.92 6.04 -3.71 -0.02 2.90 16 29 C -0.12 -1.99 4.91 -26.61 -0.13 -2.12 16 30 H 0.08 0.71 7.92 -51.93 -0.41 0.30 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.14 0.52 8.06 -52.49 -0.42 0.09 16 35 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 36 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.40 4.45 5.94 -40.82 -0.24 4.21 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 1.27 4.98 -51.93 -0.26 1.01 16 42 H 0.04 0.57 6.86 -51.93 -0.36 0.21 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.04 0.68 6.82 -51.93 -0.35 0.32 16 45 H 0.02 0.49 6.69 -51.93 -0.35 0.14 16 46 H 0.09 2.20 6.04 -51.93 -0.31 1.89 16 47 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 48 H 0.02 0.41 6.69 -51.93 -0.35 0.06 16 49 H 0.05 1.06 7.94 -51.93 -0.41 0.64 16 50 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 51 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 401.06 15.07 6.04 6.04 Total: -1.00 -32.63 401.06 -9.59 -42.22 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -8.03 Total: 3.13 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -1.67 Total: 0.96 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.31 Total: -54.93 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.59 Total: -13.90 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.63 -9.59 -42.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278632003.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.949 kcal (2) G-P(sol) polarization free energy of solvation -32.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds