Wall clock time and date at job start Wed Apr 1 2020 04:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47538 * 2 1 4 4 O 1.42905 * 109.47089 * 119.99978 * 2 1 3 5 5 C 1.35674 * 117.00053 * 270.00282 * 4 2 1 6 6 C 1.38913 * 119.68647 * 179.97438 * 5 4 2 7 7 C 1.38384 * 119.11534 * 179.97438 * 6 5 4 8 8 C 1.38835 * 118.47997 * 0.02562 * 7 6 5 9 9 C 1.38046 * 119.28946 * 0.25330 * 8 7 6 10 10 N 1.31967 * 120.83666 * 359.44834 * 9 8 7 11 11 C 1.50702 * 109.47027 * 239.99861 * 2 1 3 12 12 O 1.21276 * 119.99747 * 245.00259 * 11 2 1 13 13 N 1.34777 * 119.99983 * 64.99904 * 11 2 1 14 14 C 1.46501 * 119.99699 * 179.97438 * 13 11 2 15 15 C 1.52996 * 109.46698 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.46104 * 60.03237 * 15 14 13 17 17 C 1.53038 * 109.46456 * 300.07382 * 15 14 13 18 18 C 1.53198 * 109.31231 * 178.61543 * 17 15 14 19 19 N 1.46922 * 108.77758 * 54.63579 * 18 17 15 20 20 C 1.36930 * 120.63565 * 126.41206 * 19 18 17 21 21 H 1.08004 * 120.00227 * 207.66451 * 20 19 18 22 22 C 1.38816 * 120.00025 * 27.66177 * 20 19 18 23 23 N 1.31619 * 119.99568 * 17.36377 * 22 20 19 24 24 Si 1.86794 * 120.00185 * 197.36990 * 22 20 19 25 25 H 1.48498 * 109.47382 * 59.99716 * 24 22 20 26 26 H 1.48506 * 109.47131 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47192 * 299.99878 * 24 22 20 28 28 C 1.46933 * 118.73475 * 306.38857 * 19 18 17 29 29 C 1.53042 * 109.46007 * 180.02562 * 15 14 13 30 30 H 1.09000 * 109.47015 * 60.00071 * 1 2 3 31 31 H 1.08998 * 109.47538 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47247 * 300.00426 * 1 2 3 33 33 H 1.08003 * 120.44393 * 0.02562 * 6 5 4 34 34 H 1.07994 * 120.76001 * 180.02562 * 7 6 5 35 35 H 1.07997 * 120.35166 * 179.97438 * 8 7 6 36 36 H 1.08000 * 119.57763 * 179.72905 * 9 8 7 37 37 H 0.96998 * 119.99646 * 0.02562 * 13 11 2 38 38 H 1.08994 * 109.47472 * 300.00481 * 14 13 11 39 39 H 1.09002 * 109.46835 * 60.00978 * 14 13 11 40 40 H 1.08999 * 109.47100 * 59.99693 * 16 15 14 41 41 H 1.08997 * 109.47369 * 179.97438 * 16 15 14 42 42 H 1.09007 * 109.47047 * 300.00179 * 16 15 14 43 43 H 1.08997 * 109.49801 * 298.56386 * 17 15 14 44 44 H 1.09000 * 109.49984 * 58.66211 * 17 15 14 45 45 H 1.08999 * 109.58613 * 294.84400 * 18 17 15 46 46 H 1.08997 * 109.58289 * 174.41824 * 18 17 15 47 47 H 0.97004 * 120.00041 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.58590 * 293.82133 * 28 19 18 49 49 H 1.09003 * 109.70413 * 173.46434 * 28 19 18 50 50 H 1.09010 * 109.49495 * 301.33967 * 29 15 14 51 51 H 1.08997 * 109.49761 * 61.43516 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2116 0.0829 2.2742 6 6 2.6736 -0.5150 3.4399 7 6 2.8794 0.2679 4.5622 8 6 2.6138 1.6281 4.4784 9 6 2.1510 2.1538 3.2889 10 7 1.9699 1.3825 2.2335 11 6 2.0323 -0.7105 -1.2305 12 8 2.6529 -1.7467 -1.1214 13 7 1.7919 -0.1942 -2.4520 14 6 2.2807 -0.8847 -3.6481 15 6 1.8763 -0.0942 -4.8941 16 6 2.4871 1.3071 -4.8293 17 6 0.3512 0.0170 -4.9548 18 6 -0.0484 0.8384 -6.1847 19 7 0.5603 0.2319 -7.3765 20 6 -0.2093 -0.1069 -8.4573 21 1 0.0986 -0.9116 -9.1085 22 6 -1.3852 0.5839 -8.7160 23 7 -1.5963 1.7563 -8.1563 24 14 -2.6679 -0.1504 -9.8581 25 1 -3.1293 -1.4522 -9.3127 26 1 -3.8226 0.7772 -9.9673 27 1 -2.0721 -0.3600 -11.2021 28 6 2.0105 -0.0037 -7.3868 29 6 2.3865 -0.8159 -6.1436 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 2.8704 -1.5765 3.4696 34 1 3.2384 -0.1691 5.4823 35 1 2.7634 2.2672 5.3361 36 1 1.9387 3.2104 3.2198 37 1 1.2958 0.6347 -2.5391 38 1 3.3669 -0.9625 -3.6043 39 1 1.8463 -1.8833 -3.6942 40 1 3.5733 1.2283 -4.7855 41 1 2.1995 1.8702 -5.7171 42 1 2.1239 1.8209 -3.9392 43 1 -0.0837 -0.9799 -5.0261 44 1 -0.0138 0.5101 -4.0538 45 1 0.3092 1.8619 -6.0725 46 1 -1.1334 0.8373 -6.2879 47 1 -2.4179 2.2393 -8.3373 48 1 2.5359 0.9512 -7.3726 49 1 2.2863 -0.5592 -8.2832 50 1 3.4706 -0.9158 -6.0888 51 1 1.9321 -1.8049 -6.2035 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278632003.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:26 Heat of formation + Delta-G solvation = -38.759266 kcal Electronic energy + Delta-G solvation = -30810.515691 eV Core-core repulsion = 26709.988183 eV Total energy + Delta-G solvation = -4100.527508 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.86371 -41.05788 -39.99217 -38.69885 -36.60910 -34.84464 -33.51226 -33.27834 -32.40584 -31.56561 -30.94632 -28.69729 -28.02586 -26.21560 -25.46711 -24.50999 -24.01038 -23.63397 -22.38450 -21.41746 -19.68260 -19.55631 -18.86715 -18.12026 -17.51331 -17.00949 -16.85347 -16.77279 -16.69948 -16.29153 -15.68372 -15.55682 -15.41377 -15.29421 -15.02482 -15.00252 -14.49090 -14.44294 -14.19920 -14.06725 -13.97549 -13.46267 -13.38023 -13.15905 -12.94390 -12.93275 -12.78296 -12.66551 -12.53747 -12.37027 -12.22684 -12.21437 -11.90728 -11.78786 -11.46243 -11.17949 -11.04823 -10.92398 -10.83884 -10.57934 -10.46934 -10.16053 -9.49395 -8.61404 -7.84961 -5.27989 0.20961 0.33189 1.43011 1.46676 1.48533 1.48922 1.55195 2.46886 2.52660 2.83529 3.28554 3.28707 3.54316 3.73188 3.80143 3.84179 3.87611 3.94525 3.97773 4.06323 4.12759 4.23879 4.37021 4.41899 4.52693 4.61822 4.64305 4.65377 4.72253 4.76603 4.81580 4.84587 4.86173 4.97177 5.05401 5.08443 5.09056 5.13945 5.25561 5.30112 5.32071 5.36488 5.41580 5.51069 5.53522 5.57702 5.68793 5.87430 6.16586 6.41558 6.42946 6.86178 7.07712 7.19180 7.91949 8.42065 9.20509 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021220 B = 0.002017 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.221159 B =13881.217648 C =14337.419493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.079 3.921 3 H 0.123 0.877 4 O -0.303 6.303 5 C 0.292 3.708 6 C -0.205 4.205 7 C -0.037 4.037 8 C -0.204 4.204 9 C 0.126 3.874 10 N -0.560 5.560 11 C 0.514 3.486 12 O -0.571 6.571 13 N -0.704 5.704 14 C 0.141 3.859 15 C -0.053 4.053 16 C -0.138 4.138 17 C -0.117 4.117 18 C 0.178 3.822 19 N -0.609 5.609 20 C -0.261 4.261 21 H 0.061 0.939 22 C -0.050 4.050 23 N -0.931 5.931 24 Si 0.962 3.038 25 H -0.282 1.282 26 H -0.294 1.294 27 H -0.277 1.277 28 C 0.143 3.857 29 C -0.112 4.112 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.143 0.857 34 H 0.173 0.827 35 H 0.171 0.829 36 H 0.186 0.814 37 H 0.413 0.587 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.064 0.936 43 H 0.043 0.957 44 H 0.071 0.929 45 H 0.009 0.991 46 H 0.048 0.952 47 H 0.249 0.751 48 H 0.023 0.977 49 H 0.047 0.953 50 H 0.081 0.919 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.663 1.688 26.490 27.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.019 3.981 3 H 0.140 0.860 4 O -0.210 6.210 5 C 0.114 3.886 6 C -0.226 4.226 7 C -0.062 4.062 8 C -0.224 4.224 9 C -0.029 4.029 10 N -0.284 5.284 11 C 0.300 3.700 12 O -0.450 6.450 13 N -0.358 5.358 14 C 0.018 3.982 15 C -0.054 4.054 16 C -0.195 4.195 17 C -0.156 4.156 18 C 0.053 3.947 19 N -0.333 5.333 20 C -0.391 4.391 21 H 0.079 0.921 22 C -0.245 4.245 23 N -0.577 5.577 24 Si 0.790 3.210 25 H -0.208 1.208 26 H -0.220 1.220 27 H -0.203 1.203 28 C 0.017 3.983 29 C -0.152 4.152 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.161 0.839 34 H 0.190 0.810 35 H 0.188 0.812 36 H 0.203 0.797 37 H 0.251 0.749 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.062 0.938 44 H 0.089 0.911 45 H 0.027 0.973 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.041 0.959 49 H 0.066 0.934 50 H 0.100 0.900 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.714 1.121 25.677 27.139 hybrid contribution -0.922 -0.213 -0.507 1.073 sum 7.792 0.908 25.170 26.364 Atomic orbital electron populations 1.22139 0.90871 1.03469 1.04998 1.22069 0.96737 0.97655 0.81611 0.85961 1.86343 1.80558 1.35650 1.18429 1.20181 0.93154 0.88101 0.87136 1.21347 1.06620 1.02865 0.91764 1.21860 0.92913 0.93628 0.97814 1.22414 1.03109 0.96401 1.00469 1.23030 0.92297 1.00274 0.87263 1.67230 1.22561 1.04531 1.34095 1.20607 0.79286 0.84954 0.85169 1.90699 1.41951 1.25143 1.87171 1.45856 1.57203 1.28090 1.04640 1.21360 0.99049 0.95219 0.82583 1.20560 0.95437 0.96095 0.93259 1.21884 1.00640 0.95047 1.01895 1.22066 0.94836 1.00130 0.98616 1.20607 0.97369 0.92537 0.84195 1.44281 1.02415 1.72762 1.13832 1.19439 1.03668 1.10884 1.05152 0.92098 1.25698 1.02234 0.95548 1.01029 1.70158 1.26161 1.12776 1.48610 0.85430 0.78904 0.77468 0.79173 1.20809 1.21984 1.20319 1.21041 0.84326 0.96655 0.96243 1.21890 1.00581 0.98498 0.94212 0.88484 0.92136 0.90252 0.83914 0.80974 0.81173 0.79731 0.74876 0.91190 0.92573 0.91642 0.93272 0.91738 0.93841 0.91065 0.97312 0.93384 0.94180 0.95924 0.93421 0.90023 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.49 71.98 0.68 -2.32 16 2 C 0.08 1.84 2.90 29.85 0.09 1.93 16 3 H 0.12 2.56 6.98 -2.39 -0.02 2.55 16 4 O -0.30 -8.19 9.30 -70.92 -0.66 -8.85 16 5 C 0.29 6.59 7.45 84.79 0.63 7.22 16 6 C -0.21 -3.60 10.04 22.47 0.23 -3.38 16 7 C -0.04 -0.39 10.17 22.45 0.23 -0.16 16 8 C -0.20 -1.85 10.11 22.37 0.23 -1.62 16 9 C 0.13 1.62 11.18 84.63 0.95 2.57 16 10 N -0.56 -11.04 8.65 -308.95 -2.67 -13.71 16 11 C 0.51 14.32 7.18 87.66 0.63 14.95 16 12 O -0.57 -20.89 16.51 15.97 0.26 -20.63 16 13 N -0.70 -16.84 4.91 -463.07 -2.27 -19.11 16 14 C 0.14 3.77 4.56 86.38 0.39 4.17 16 15 C -0.05 -1.53 0.53 -52.16 -0.03 -1.56 16 16 C -0.14 -3.67 7.54 71.98 0.54 -3.12 16 17 C -0.12 -4.03 4.75 30.67 0.15 -3.88 16 18 C 0.18 8.12 4.84 86.37 0.42 8.54 16 19 N -0.61 -29.72 2.99 -699.07 -2.09 -31.81 16 20 C -0.26 -14.28 9.59 84.04 0.81 -13.48 16 21 H 0.06 3.29 7.89 -2.91 -0.02 3.27 16 22 C -0.05 -2.75 4.91 84.86 0.42 -2.34 16 23 N -0.93 -54.15 11.19 21.65 0.24 -53.91 16 24 Si 0.96 44.92 29.59 68.60 2.03 46.95 16 25 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 26 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 27 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 28 C 0.14 5.68 6.04 86.36 0.52 6.21 16 29 C -0.11 -3.56 4.91 30.67 0.15 -3.41 16 30 H 0.10 1.50 7.92 -2.39 -0.02 1.49 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.17 0.65 8.06 -2.91 -0.02 0.62 16 35 H 0.17 0.37 8.06 -2.91 -0.02 0.35 16 36 H 0.19 1.22 8.06 -2.91 -0.02 1.19 16 37 H 0.41 8.14 5.94 -92.71 -0.55 7.59 16 38 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.05 1.60 4.98 -2.39 -0.01 1.59 16 42 H 0.06 1.46 6.86 -2.38 -0.02 1.44 16 43 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 44 H 0.07 2.05 6.82 -2.39 -0.02 2.03 16 45 H 0.01 0.42 6.69 -2.39 -0.02 0.40 16 46 H 0.05 2.54 6.04 -2.39 -0.01 2.53 16 47 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 48 H 0.02 0.90 6.69 -2.39 -0.02 0.89 16 49 H 0.05 1.91 7.94 -2.39 -0.02 1.89 16 50 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 51 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -73.56 401.06 2.24 -71.31 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.38 Total: 19.46 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 7.02 Total: 10.30 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -6.80 Total: -118.55 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.40 Total: -29.48 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -73.56 2.24 -71.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278632003.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.552 kcal (2) G-P(sol) polarization free energy of solvation -73.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds