Wall clock time and date at job start Wed Apr 1 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46898 * 109.47552 * 2 1 4 4 C 1.47019 * 110.99640 * 66.04607 * 3 2 1 5 5 C 1.53096 * 109.25764 * 177.60973 * 4 3 2 6 6 O 1.43017 * 109.25805 * 56.84882 * 5 4 3 7 7 C 1.43018 * 113.73865 * 301.32901 * 6 5 4 8 8 H 1.09005 * 109.50451 * 298.69379 * 7 6 5 9 9 C 1.50701 * 109.50722 * 178.60757 * 7 6 5 10 10 O 1.21280 * 119.99781 * 354.99623 * 9 7 6 11 11 N 1.34771 * 119.99622 * 175.00299 * 9 7 6 12 12 C 1.46505 * 119.99622 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 11 9 14 14 H 1.09000 * 109.47325 * 294.99862 * 13 12 11 15 15 N 1.46500 * 109.47170 * 54.99826 * 13 12 11 16 16 C 1.36939 * 120.00440 * 205.00175 * 15 13 12 17 17 H 1.08007 * 119.99440 * 359.97438 * 16 15 13 18 18 C 1.38814 * 120.00407 * 180.02562 * 16 15 13 19 19 N 1.31615 * 119.99666 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99989 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47253 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46971 * 119.99699 * 20 18 16 23 23 H 1.48500 * 109.47007 * 239.99838 * 20 18 16 24 24 C 1.50698 * 109.47721 * 174.99896 * 13 12 11 25 25 C 1.38236 * 119.99767 * 279.73535 * 24 13 12 26 26 C 1.38241 * 119.99855 * 179.73945 * 25 24 13 27 27 C 1.38239 * 119.99793 * 0.52450 * 26 25 24 28 28 C 1.38232 * 119.99922 * 359.74764 * 27 26 25 29 29 C 1.38229 * 120.00097 * 99.99496 * 24 13 12 30 30 C 1.47012 * 111.00238 * 302.41436 * 3 2 1 31 31 H 1.09000 * 109.46828 * 59.99980 * 1 2 3 32 32 H 1.09000 * 109.47269 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47315 * 300.00040 * 1 2 3 34 34 H 1.09007 * 109.47063 * 239.99808 * 2 1 3 35 35 H 1.09007 * 109.47273 * 120.00517 * 2 1 3 36 36 H 1.09000 * 109.50746 * 57.67225 * 4 3 2 37 37 H 1.09008 * 109.50323 * 297.54453 * 4 3 2 38 38 H 1.08995 * 109.50728 * 296.91533 * 5 4 3 39 39 H 1.09004 * 109.50699 * 176.78326 * 5 4 3 40 40 H 0.96996 * 120.00772 * 359.97438 * 11 9 7 41 41 H 1.09002 * 109.47068 * 299.99729 * 12 11 9 42 42 H 1.09001 * 109.47372 * 59.99816 * 12 11 9 43 43 H 0.96998 * 120.00051 * 24.99940 * 15 13 12 44 44 H 0.97000 * 119.99759 * 180.02562 * 19 18 16 45 45 H 1.07995 * 119.99950 * 359.97438 * 25 24 13 46 46 H 1.07995 * 119.99896 * 180.29160 * 26 25 24 47 47 H 1.07994 * 119.99956 * 179.76566 * 27 26 25 48 48 H 1.07999 * 120.00101 * 180.02562 * 28 27 26 49 49 H 1.07998 * 120.00342 * 0.02562 * 29 24 13 50 50 H 1.08999 * 109.50527 * 62.44730 * 30 3 2 51 51 H 1.09002 * 109.50068 * 302.32789 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6700 2.0674 1.2544 5 6 2.2493 3.4844 1.2368 6 8 1.7596 4.1800 0.0872 7 6 2.0828 3.5433 -1.1520 8 1 3.1659 3.4937 -1.2640 9 6 1.4947 4.3339 -2.2924 10 8 0.7857 5.2911 -2.0645 11 7 1.7567 3.9770 -3.5653 12 6 1.1846 4.7452 -4.6739 13 6 1.6349 4.1354 -6.0028 14 1 2.7148 4.2429 -6.1046 15 7 1.2807 2.7141 -6.0329 16 6 1.9862 1.8492 -6.8263 17 1 2.8035 2.2150 -7.4303 18 6 1.6503 0.5027 -6.8552 19 7 0.6540 0.0571 -6.1195 20 14 2.6122 -0.6769 -7.9381 21 1 3.6750 0.0682 -8.6596 22 1 3.2324 -1.7298 -7.0941 23 1 1.6944 -1.3070 -8.9208 24 6 0.9498 4.8478 -7.1404 25 6 -0.3507 4.5218 -7.4770 26 6 -0.9810 5.1791 -8.5170 27 6 -0.3071 6.1549 -9.2274 28 6 0.9952 6.4770 -8.8943 29 6 1.6236 5.8237 -7.8506 30 6 1.5018 2.1270 -1.1586 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.0850 1.5148 2.0973 37 1 0.5854 2.1187 1.3506 38 1 3.3372 3.4323 1.1946 39 1 1.9444 4.0135 2.1397 40 1 2.3240 3.2117 -3.7476 41 1 0.0967 4.7181 -4.6113 42 1 1.5263 5.7785 -4.6144 43 1 0.5465 2.3857 -5.4907 44 1 0.4195 -0.8839 -6.1394 45 1 -0.8756 3.7561 -6.9250 46 1 -1.9986 4.9276 -8.7769 47 1 -0.7982 6.6658 -10.0423 48 1 1.5216 7.2396 -9.4490 49 1 2.6412 6.0752 -7.5907 50 1 0.4146 2.1792 -1.1010 51 1 1.7941 1.6178 -2.0770 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317730054.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:17 Heat of formation + Delta-G solvation = -32.480514 kcal Electronic energy + Delta-G solvation = -31370.907844 eV Core-core repulsion = 27270.652603 eV Total energy + Delta-G solvation = -4100.255241 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.32321 -39.09630 -38.48129 -36.36912 -35.80240 -33.64315 -32.22852 -31.37763 -30.73625 -30.42448 -29.58635 -27.83215 -26.53764 -24.77760 -23.75069 -23.08499 -22.54252 -21.92918 -20.34081 -20.04675 -19.84598 -17.63657 -17.18541 -16.69817 -16.36752 -16.02097 -15.53415 -15.33457 -15.14906 -15.05977 -14.64405 -14.54198 -14.27295 -14.14721 -13.87955 -13.76685 -13.29029 -13.10160 -12.88706 -12.79638 -12.59512 -12.50076 -12.34262 -12.06450 -11.91265 -11.85663 -11.46610 -11.14874 -10.99967 -10.94988 -10.85832 -10.74495 -10.68904 -10.47829 -10.14353 -9.84547 -9.77596 -9.47827 -9.11708 -8.71110 -8.47564 -8.41791 -8.20440 -7.17037 -5.90927 -3.21944 1.84777 1.91686 2.81503 3.03841 3.34918 3.42749 3.43441 3.69139 4.12816 4.30230 4.47428 4.72245 4.78756 4.84510 4.99434 5.04512 5.09109 5.21766 5.23122 5.26264 5.33355 5.34656 5.40402 5.44097 5.48202 5.54497 5.57572 5.59497 5.75255 5.75574 5.76342 5.83031 5.85023 5.92054 6.02596 6.08047 6.16614 6.24596 6.39725 6.47267 6.61644 6.74437 6.79023 6.84705 6.92255 6.99692 7.02578 7.26769 7.51662 7.61184 7.85283 8.25167 8.50174 9.38744 9.88084 10.25036 11.30377 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008797 B = 0.003578 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3181.960914 B = 7823.079599 C =10166.879969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.051 3.949 3 N -0.532 5.532 4 C 0.011 3.989 5 C 0.063 3.937 6 O -0.358 6.358 7 C 0.080 3.920 8 H 0.091 0.909 9 C 0.519 3.481 10 O -0.531 6.531 11 N -0.709 5.709 12 C 0.123 3.877 13 C 0.198 3.802 14 H 0.066 0.934 15 N -0.714 5.714 16 C -0.242 4.242 17 H 0.072 0.928 18 C -0.005 4.005 19 N -0.928 5.928 20 Si 0.904 3.096 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.292 1.292 24 C -0.081 4.081 25 C -0.083 4.083 26 C -0.128 4.128 27 C -0.134 4.134 28 C -0.130 4.130 29 C -0.120 4.120 30 C 0.026 3.974 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.411 0.589 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.387 0.613 44 H 0.255 0.745 45 H 0.123 0.877 46 H 0.113 0.887 47 H 0.111 0.889 48 H 0.112 0.888 49 H 0.115 0.885 50 H 0.055 0.945 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.222 5.457 9.588 11.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.077 4.077 3 N -0.257 5.257 4 C -0.117 4.117 5 C -0.014 4.014 6 O -0.275 6.275 7 C 0.018 3.982 8 H 0.108 0.892 9 C 0.303 3.697 10 O -0.407 6.407 11 N -0.363 5.363 12 C -0.002 4.002 13 C 0.087 3.913 14 H 0.084 0.916 15 N -0.354 5.354 16 C -0.373 4.373 17 H 0.090 0.910 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.735 3.265 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.219 1.219 24 C -0.085 4.085 25 C -0.101 4.101 26 C -0.146 4.146 27 C -0.152 4.152 28 C -0.148 4.148 29 C -0.139 4.139 30 C -0.103 4.103 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.118 0.882 40 H 0.248 0.752 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.221 0.779 44 H 0.065 0.935 45 H 0.141 0.859 46 H 0.131 0.869 47 H 0.129 0.871 48 H 0.130 0.870 49 H 0.133 0.867 50 H 0.073 0.927 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.249 6.187 9.631 11.666 hybrid contribution -0.352 -1.601 -0.703 1.784 sum 1.897 4.586 8.928 10.215 Atomic orbital electron populations 1.22435 0.97904 1.02678 1.02290 1.22183 0.93269 0.88985 1.03250 1.62462 1.58790 1.02516 1.01883 1.22857 0.99741 0.95928 0.93203 1.22719 0.98599 0.91291 0.88795 1.88103 1.78208 1.48545 1.12668 1.21932 0.99982 0.91168 0.85096 0.89179 1.19968 0.81331 0.84820 0.83583 1.90696 1.37248 1.28216 1.84513 1.45854 1.52163 1.33739 1.04514 1.21594 0.98710 0.94663 0.85193 1.19487 0.97299 0.85655 0.88866 0.91566 1.42459 1.39751 1.00424 1.52810 1.19233 1.10764 0.88604 1.18670 0.91035 1.24697 0.98450 0.97031 0.99950 1.69660 1.30245 1.14431 1.43181 0.86174 0.79141 0.81230 0.79949 1.20533 1.21842 1.21900 1.20958 0.94447 0.94655 0.98466 1.21003 0.94707 0.97808 0.96608 1.21109 0.99722 0.97066 0.96723 1.20982 0.95203 0.98890 1.00144 1.20986 0.95269 1.00434 0.98134 1.21013 0.99607 0.96839 0.96407 1.22731 0.99008 0.92967 0.95581 0.91746 0.91822 0.92806 0.89780 0.90649 0.89635 0.93454 0.92166 0.88159 0.75196 0.91527 0.91389 0.77888 0.93489 0.85919 0.86875 0.87096 0.86989 0.86723 0.92685 0.88034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.15 9.20 37.16 0.34 -1.81 16 2 C 0.05 0.55 6.10 -3.83 -0.02 0.53 16 3 N -0.53 -6.34 4.94 -234.30 -1.16 -7.49 16 4 C 0.01 0.11 5.33 -3.71 -0.02 0.09 16 5 C 0.06 0.68 7.01 37.21 0.26 0.94 16 6 O -0.36 -5.36 10.01 -55.06 -0.55 -5.91 16 7 C 0.08 1.14 3.22 -27.83 -0.09 1.06 16 8 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 9 C 0.52 8.75 7.18 -10.99 -0.08 8.67 16 10 O -0.53 -10.88 16.51 -14.27 -0.24 -11.12 16 11 N -0.71 -11.25 5.35 -60.29 -0.32 -11.58 16 12 C 0.12 2.03 5.21 -4.04 -0.02 2.01 16 13 C 0.20 3.52 2.65 -69.08 -0.18 3.34 16 14 H 0.07 1.17 7.94 -51.93 -0.41 0.75 16 15 N -0.71 -15.39 3.79 -54.55 -0.21 -15.59 16 16 C -0.24 -5.99 9.92 -15.06 -0.15 -6.14 16 17 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 18 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 19 N -0.93 -25.44 13.06 55.49 0.72 -24.71 16 20 Si 0.90 21.11 29.55 -169.99 -5.02 16.08 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 C -0.08 -1.44 4.92 -104.63 -0.52 -1.95 16 25 C -0.08 -1.50 9.33 -39.58 -0.37 -1.87 16 26 C -0.13 -2.06 10.05 -39.58 -0.40 -2.45 16 27 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 28 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 29 C -0.12 -1.89 9.67 -39.58 -0.38 -2.27 16 30 C 0.03 0.35 4.37 -3.72 -0.02 0.33 16 31 H 0.06 0.84 6.42 -51.93 -0.33 0.50 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.56 6.61 -51.93 -0.34 0.22 16 34 H 0.08 0.99 8.14 -51.92 -0.42 0.56 16 35 H 0.08 0.70 8.11 -51.93 -0.42 0.28 16 36 H 0.09 0.71 8.12 -51.93 -0.42 0.29 16 37 H 0.05 0.53 6.59 -51.92 -0.34 0.18 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.41 6.41 8.02 -40.82 -0.33 6.09 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.39 9.02 7.80 -40.82 -0.32 8.70 16 44 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.12 2.38 7.71 -52.49 -0.40 1.97 16 46 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 47 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 48 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 49 H 0.11 1.58 8.04 -52.49 -0.42 1.16 16 50 H 0.05 0.83 6.40 -51.93 -0.33 0.50 16 51 H 0.10 1.46 8.02 -51.93 -0.42 1.05 16 LS Contribution 411.36 15.07 6.20 6.20 Total: -1.00 -30.07 411.36 -11.38 -41.45 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: -8.27 Total: 17.08 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.53 Total: -4.41 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.96 Total: -59.38 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.79 Total: -17.03 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.07 -11.38 -41.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317730054.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.968 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds