Wall clock time and date at job start Wed Apr 1 2020 06:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46898 * 109.47552 * 2 1 4 4 C 1.47019 * 110.99640 * 66.04607 * 3 2 1 5 5 C 1.53096 * 109.25764 * 177.60973 * 4 3 2 6 6 O 1.43017 * 109.25805 * 56.84882 * 5 4 3 7 7 C 1.43018 * 113.73865 * 301.32901 * 6 5 4 8 8 H 1.09005 * 109.50451 * 298.69379 * 7 6 5 9 9 C 1.50701 * 109.50722 * 178.60757 * 7 6 5 10 10 O 1.21280 * 119.99781 * 354.99623 * 9 7 6 11 11 N 1.34771 * 119.99622 * 175.00299 * 9 7 6 12 12 C 1.46505 * 119.99622 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 11 9 14 14 H 1.09000 * 109.47325 * 294.99862 * 13 12 11 15 15 N 1.46500 * 109.47170 * 54.99826 * 13 12 11 16 16 C 1.36939 * 120.00440 * 205.00175 * 15 13 12 17 17 H 1.08007 * 119.99440 * 359.97438 * 16 15 13 18 18 C 1.38814 * 120.00407 * 180.02562 * 16 15 13 19 19 N 1.31615 * 119.99666 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99989 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47253 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46971 * 119.99699 * 20 18 16 23 23 H 1.48500 * 109.47007 * 239.99838 * 20 18 16 24 24 C 1.50698 * 109.47721 * 174.99896 * 13 12 11 25 25 C 1.38236 * 119.99767 * 279.73535 * 24 13 12 26 26 C 1.38241 * 119.99855 * 179.73945 * 25 24 13 27 27 C 1.38239 * 119.99793 * 0.52450 * 26 25 24 28 28 C 1.38232 * 119.99922 * 359.74764 * 27 26 25 29 29 C 1.38229 * 120.00097 * 99.99496 * 24 13 12 30 30 C 1.47012 * 111.00238 * 302.41436 * 3 2 1 31 31 H 1.09000 * 109.46828 * 59.99980 * 1 2 3 32 32 H 1.09000 * 109.47269 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47315 * 300.00040 * 1 2 3 34 34 H 1.09007 * 109.47063 * 239.99808 * 2 1 3 35 35 H 1.09007 * 109.47273 * 120.00517 * 2 1 3 36 36 H 1.09000 * 109.50746 * 57.67225 * 4 3 2 37 37 H 1.09008 * 109.50323 * 297.54453 * 4 3 2 38 38 H 1.08995 * 109.50728 * 296.91533 * 5 4 3 39 39 H 1.09004 * 109.50699 * 176.78326 * 5 4 3 40 40 H 0.96996 * 120.00772 * 359.97438 * 11 9 7 41 41 H 1.09002 * 109.47068 * 299.99729 * 12 11 9 42 42 H 1.09001 * 109.47372 * 59.99816 * 12 11 9 43 43 H 0.96998 * 120.00051 * 24.99940 * 15 13 12 44 44 H 0.97000 * 119.99759 * 180.02562 * 19 18 16 45 45 H 1.07995 * 119.99950 * 359.97438 * 25 24 13 46 46 H 1.07995 * 119.99896 * 180.29160 * 26 25 24 47 47 H 1.07994 * 119.99956 * 179.76566 * 27 26 25 48 48 H 1.07999 * 120.00101 * 180.02562 * 28 27 26 49 49 H 1.07998 * 120.00342 * 0.02562 * 29 24 13 50 50 H 1.08999 * 109.50527 * 62.44730 * 30 3 2 51 51 H 1.09002 * 109.50068 * 302.32789 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6700 2.0674 1.2544 5 6 2.2493 3.4844 1.2368 6 8 1.7596 4.1800 0.0872 7 6 2.0828 3.5433 -1.1520 8 1 3.1659 3.4937 -1.2640 9 6 1.4947 4.3339 -2.2924 10 8 0.7857 5.2911 -2.0645 11 7 1.7567 3.9770 -3.5653 12 6 1.1846 4.7452 -4.6739 13 6 1.6349 4.1354 -6.0028 14 1 2.7148 4.2429 -6.1046 15 7 1.2807 2.7141 -6.0329 16 6 1.9862 1.8492 -6.8263 17 1 2.8035 2.2150 -7.4303 18 6 1.6503 0.5027 -6.8552 19 7 0.6540 0.0571 -6.1195 20 14 2.6122 -0.6769 -7.9381 21 1 3.6750 0.0682 -8.6596 22 1 3.2324 -1.7298 -7.0941 23 1 1.6944 -1.3070 -8.9208 24 6 0.9498 4.8478 -7.1404 25 6 -0.3507 4.5218 -7.4770 26 6 -0.9810 5.1791 -8.5170 27 6 -0.3071 6.1549 -9.2274 28 6 0.9952 6.4770 -8.8943 29 6 1.6236 5.8237 -7.8506 30 6 1.5018 2.1270 -1.1586 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.0850 1.5148 2.0973 37 1 0.5854 2.1187 1.3506 38 1 3.3372 3.4323 1.1946 39 1 1.9444 4.0135 2.1397 40 1 2.3240 3.2117 -3.7476 41 1 0.0967 4.7181 -4.6113 42 1 1.5263 5.7785 -4.6144 43 1 0.5465 2.3857 -5.4907 44 1 0.4195 -0.8839 -6.1394 45 1 -0.8756 3.7561 -6.9250 46 1 -1.9986 4.9276 -8.7769 47 1 -0.7982 6.6658 -10.0423 48 1 1.5216 7.2396 -9.4490 49 1 2.6412 6.0752 -7.5907 50 1 0.4146 2.1792 -1.1010 51 1 1.7941 1.6178 -2.0770 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317730054.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:16 Heat of formation + Delta-G solvation = -51.770777 kcal Electronic energy + Delta-G solvation = -31371.744333 eV Core-core repulsion = 27270.652603 eV Total energy + Delta-G solvation = -4101.091729 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.50341 -40.36192 -39.73462 -37.52751 -37.15852 -35.25921 -33.80776 -32.50110 -31.69500 -31.68487 -31.16951 -29.15843 -27.65607 -25.99956 -25.39975 -24.25994 -23.68140 -23.19123 -21.64193 -21.30515 -20.96631 -19.34471 -18.54842 -17.94047 -17.58267 -17.15788 -16.86650 -16.60449 -16.38024 -16.06267 -15.97350 -15.83690 -15.68221 -15.49766 -15.06018 -14.93791 -14.82570 -14.48678 -14.17811 -14.05141 -13.80593 -13.74827 -13.43391 -13.39968 -12.95986 -12.88541 -12.82551 -12.78850 -12.43632 -12.41370 -12.14515 -12.00235 -11.92494 -11.82482 -11.62682 -11.59564 -11.03498 -10.85381 -10.75782 -10.12068 -9.66940 -9.52075 -9.45027 -9.01404 -7.90368 -5.19313 0.59198 0.65700 1.45996 1.48355 1.51664 1.58583 1.82874 2.57439 2.70428 2.99985 3.07140 3.44314 3.64725 3.70570 3.80733 3.87813 3.95791 4.04018 4.07859 4.17169 4.20452 4.22975 4.27809 4.35295 4.37289 4.37734 4.42217 4.45927 4.55671 4.66926 4.70806 4.75954 4.80241 4.84111 4.88289 4.94740 4.98944 5.03587 5.22503 5.23976 5.31584 5.39150 5.58035 5.70268 5.74158 5.80187 5.94081 5.94796 6.00538 6.26464 6.29961 6.50739 7.14092 7.38235 8.04756 8.32093 9.31531 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008797 B = 0.003578 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3181.960914 B = 7823.079599 C =10166.879969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.051 3.949 3 N -0.532 5.532 4 C 0.011 3.989 5 C 0.057 3.943 6 O -0.385 6.385 7 C 0.088 3.912 8 H 0.110 0.890 9 C 0.518 3.482 10 O -0.571 6.571 11 N -0.701 5.701 12 C 0.133 3.867 13 C 0.205 3.795 14 H 0.074 0.926 15 N -0.717 5.717 16 C -0.227 4.227 17 H 0.074 0.926 18 C -0.060 4.060 19 N -0.960 5.960 20 Si 0.958 3.042 21 H -0.270 1.270 22 H -0.294 1.294 23 H -0.303 1.303 24 C -0.101 4.101 25 C -0.110 4.110 26 C -0.138 4.138 27 C -0.131 4.131 28 C -0.127 4.127 29 C -0.126 4.126 30 C 0.036 3.964 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.123 0.877 40 H 0.414 0.586 41 H 0.048 0.952 42 H 0.080 0.920 43 H 0.375 0.625 44 H 0.248 0.752 45 H 0.095 0.905 46 H 0.127 0.873 47 H 0.143 0.857 48 H 0.147 0.853 49 H 0.135 0.865 50 H 0.034 0.966 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.948 6.498 9.480 12.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.076 4.076 3 N -0.257 5.257 4 C -0.116 4.116 5 C -0.019 4.019 6 O -0.303 6.303 7 C 0.027 3.973 8 H 0.127 0.873 9 C 0.303 3.697 10 O -0.450 6.450 11 N -0.354 5.354 12 C 0.008 3.992 13 C 0.095 3.905 14 H 0.092 0.908 15 N -0.356 5.356 16 C -0.359 4.359 17 H 0.092 0.908 18 C -0.253 4.253 19 N -0.610 5.610 20 Si 0.789 3.211 21 H -0.194 1.194 22 H -0.221 1.221 23 H -0.231 1.231 24 C -0.104 4.104 25 C -0.128 4.128 26 C -0.156 4.156 27 C -0.149 4.149 28 C -0.144 4.144 29 C -0.144 4.144 30 C -0.093 4.093 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.120 0.880 36 H 0.133 0.867 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.141 0.859 40 H 0.251 0.749 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.208 0.792 44 H 0.057 0.943 45 H 0.114 0.886 46 H 0.145 0.855 47 H 0.161 0.839 48 H 0.164 0.836 49 H 0.153 0.847 50 H 0.052 0.948 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.013 7.254 9.512 12.618 hybrid contribution -0.910 -1.805 -0.675 2.132 sum 3.103 5.449 8.836 10.835 Atomic orbital electron populations 1.22389 0.98234 1.02969 1.01276 1.22234 0.92936 0.88541 1.03928 1.62499 1.58504 1.02814 1.01843 1.22955 0.99435 0.96082 0.93169 1.23025 0.99425 0.91416 0.88028 1.88072 1.78956 1.49725 1.13588 1.21834 1.00598 0.90538 0.84333 0.87256 1.20480 0.80568 0.84368 0.84235 1.90667 1.39126 1.30113 1.85073 1.45811 1.51694 1.33499 1.04394 1.21458 0.97649 0.95211 0.84856 1.19543 0.97590 0.83663 0.89677 0.90788 1.42473 1.39063 1.01886 1.52219 1.19473 1.09996 0.88891 1.17537 0.90821 1.25287 0.99721 0.98543 1.01711 1.69793 1.32047 1.14048 1.45123 0.85306 0.77995 0.79505 0.78306 1.19416 1.22124 1.23131 1.20859 0.94572 0.96114 0.98862 1.20949 0.95393 0.98485 0.97999 1.21341 1.00582 0.97373 0.96294 1.21385 0.95364 0.97913 1.00239 1.21416 0.95276 1.00350 0.97401 1.21290 1.00521 0.96221 0.96413 1.22529 0.97677 0.92918 0.96218 0.94475 0.90869 0.92058 0.90972 0.88050 0.86685 0.94354 0.90824 0.85924 0.74883 0.93343 0.90207 0.79234 0.94295 0.88643 0.85547 0.83893 0.83566 0.84683 0.94794 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.22 9.20 71.98 0.66 -3.56 16 2 C 0.05 1.07 6.10 86.30 0.53 1.60 16 3 N -0.53 -12.20 4.94 -895.20 -4.42 -16.62 16 4 C 0.01 0.21 5.33 86.31 0.46 0.67 16 5 C 0.06 1.12 7.01 72.01 0.50 1.63 16 6 O -0.38 -11.37 10.01 -130.02 -1.30 -12.67 16 7 C 0.09 2.54 3.22 29.88 0.10 2.64 16 8 H 0.11 2.70 8.14 -2.38 -0.02 2.68 16 9 C 0.52 17.94 7.18 87.66 0.63 18.57 16 10 O -0.57 -24.14 16.51 15.93 0.26 -23.88 16 11 N -0.70 -22.90 5.35 -463.06 -2.48 -25.38 16 12 C 0.13 4.50 5.21 86.38 0.45 4.95 16 13 C 0.20 7.34 2.65 44.24 0.12 7.46 16 14 H 0.07 2.55 7.94 -2.39 -0.02 2.53 16 15 N -0.72 -31.76 3.79 -326.50 -1.24 -33.00 16 16 C -0.23 -11.34 9.92 84.03 0.83 -10.51 16 17 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 18 C -0.06 -3.15 5.50 84.86 0.47 -2.69 16 19 N -0.96 -54.33 13.06 21.65 0.28 -54.05 16 20 Si 0.96 43.82 29.55 68.60 2.03 45.85 16 21 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 22 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 23 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 24 C -0.10 -3.53 4.92 -19.87 -0.10 -3.63 16 25 C -0.11 -4.07 9.33 22.27 0.21 -3.86 16 26 C -0.14 -4.33 10.05 22.27 0.22 -4.10 16 27 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 28 C -0.13 -3.27 10.05 22.27 0.22 -3.04 16 29 C -0.13 -3.71 9.67 22.27 0.22 -3.49 16 30 C 0.04 1.00 4.37 86.31 0.38 1.38 16 31 H 0.04 1.02 6.42 -2.39 -0.02 1.00 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.25 6.61 -2.39 -0.02 1.24 16 34 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.10 1.63 8.11 -2.38 -0.02 1.61 16 36 H 0.12 1.53 8.12 -2.39 -0.02 1.51 16 37 H 0.04 0.81 6.59 -2.38 -0.02 0.79 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.41 13.22 8.02 -92.71 -0.74 12.48 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.37 18.38 7.80 -92.71 -0.72 17.66 16 44 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 45 H 0.10 3.97 7.71 -2.91 -0.02 3.95 16 46 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 47 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 48 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 49 H 0.14 3.35 8.04 -2.91 -0.02 3.32 16 50 H 0.03 1.09 6.40 -2.39 -0.02 1.07 16 51 H 0.09 2.70 8.02 -2.39 -0.02 2.68 16 Total: -1.00 -66.32 411.36 -1.27 -67.60 By element: Atomic # 1 Polarization: 51.92 SS G_CDS: -0.53 Total: 51.39 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 6.12 Total: 0.77 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -7.85 Total: -129.04 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -1.04 Total: -36.55 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -66.32 -1.27 -67.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317730054.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.825 kcal (2) G-P(sol) polarization free energy of solvation -66.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds