Wall clock time and date at job start Wed Apr 1 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46894 * 109.47255 * 2 1 4 4 C 1.47009 * 111.00295 * 293.63244 * 3 2 1 5 5 C 1.53093 * 109.26071 * 177.60644 * 4 3 2 6 6 O 1.43015 * 109.25965 * 56.84798 * 5 4 3 7 7 C 1.43027 * 113.77765 * 301.35611 * 6 5 4 8 8 H 1.08998 * 109.46845 * 298.68706 * 7 6 5 9 9 C 1.50697 * 109.54836 * 178.55489 * 7 6 5 10 10 O 1.21287 * 119.99671 * 355.19595 * 9 7 6 11 11 N 1.34770 * 120.00317 * 175.19948 * 9 7 6 12 12 C 1.46499 * 120.00270 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.47161 * 179.97438 * 12 11 9 14 14 H 1.09003 * 109.47153 * 64.99975 * 13 12 11 15 15 N 1.46499 * 109.47162 * 304.99741 * 13 12 11 16 16 C 1.36936 * 119.99968 * 154.99599 * 15 13 12 17 17 H 1.08002 * 119.99980 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99779 * 180.02562 * 16 15 13 19 19 N 1.31609 * 120.00140 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99806 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47171 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47209 * 119.99825 * 20 18 16 23 23 H 1.48496 * 109.47182 * 240.00408 * 20 18 16 24 24 C 1.50702 * 109.47134 * 184.99899 * 13 12 11 25 25 C 1.38234 * 119.99911 * 79.72573 * 24 13 12 26 26 C 1.38238 * 119.99671 * 179.78740 * 25 24 13 27 27 C 1.38236 * 120.00004 * 0.44326 * 26 25 24 28 28 C 1.38227 * 119.99934 * 359.81084 * 27 26 25 29 29 C 1.38235 * 119.99705 * 260.00201 * 24 13 12 30 30 C 1.47016 * 110.99844 * 169.99520 * 3 2 1 31 31 H 1.09001 * 109.47452 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47138 * 300.00366 * 1 2 3 33 33 H 1.09006 * 109.46505 * 59.99885 * 1 2 3 34 34 H 1.09000 * 109.47138 * 239.99634 * 2 1 3 35 35 H 1.09006 * 109.46505 * 120.00115 * 2 1 3 36 36 H 1.09001 * 109.50528 * 297.54402 * 4 3 2 37 37 H 1.09003 * 109.50599 * 57.67193 * 4 3 2 38 38 H 1.08994 * 109.50954 * 176.78275 * 5 4 3 39 39 H 1.09004 * 109.51138 * 296.91641 * 5 4 3 40 40 H 0.97003 * 119.99833 * 0.02562 * 11 9 7 41 41 H 1.09004 * 109.47229 * 299.99567 * 12 11 9 42 42 H 1.08998 * 109.47342 * 60.00016 * 12 11 9 43 43 H 0.97003 * 119.99733 * 335.00416 * 15 13 12 44 44 H 0.96998 * 120.00186 * 179.97438 * 19 18 16 45 45 H 1.07995 * 119.99899 * 359.97438 * 25 24 13 46 46 H 1.08002 * 119.99988 * 180.27260 * 26 25 24 47 47 H 1.08001 * 119.99723 * 179.83224 * 27 26 25 48 48 H 1.08006 * 119.99867 * 180.02562 * 28 27 26 49 49 H 1.07998 * 120.00281 * 359.97438 * 29 24 13 50 50 H 1.09002 * 109.50934 * 302.33071 * 30 3 2 51 51 H 1.09003 * 109.50733 * 62.41665 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6767 2.0651 -1.2573 5 6 2.1517 3.5189 -1.1909 6 8 3.5571 3.5445 -0.9276 7 6 3.9277 2.8910 0.2895 8 1 3.4506 3.3930 1.1312 9 6 5.4248 2.9432 0.4543 10 8 6.1159 3.4083 -0.4272 11 7 5.9956 2.4731 1.5810 12 6 7.4508 2.5244 1.7414 13 6 7.8355 1.9326 3.0989 14 1 7.5804 0.8731 3.1188 15 7 7.1060 2.6307 4.1603 16 6 6.8671 2.0032 5.3538 17 1 7.2169 0.9939 5.5127 18 6 6.1753 2.6645 6.3593 19 7 5.7487 3.8944 6.1655 20 14 5.8501 1.8088 7.9876 21 1 6.4293 0.4419 7.9529 22 1 6.4775 2.5839 9.0882 23 1 4.3855 1.7206 8.2166 24 6 9.3177 2.0966 3.3165 25 6 9.8244 3.3125 3.7357 26 6 11.1835 3.4615 3.9396 27 6 12.0369 2.3974 3.7154 28 6 11.5307 1.1831 3.2912 29 6 10.1711 1.0327 3.0914 30 6 3.4697 1.4310 0.2385 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3632 0.5139 -0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8901 36 1 2.1664 1.5598 -2.0898 37 1 0.5964 2.0413 -1.4010 38 1 1.9507 4.0114 -2.1423 39 1 1.6223 4.0388 -0.3923 40 1 5.4428 2.1008 2.2858 41 1 7.9245 1.9486 0.9462 42 1 7.7859 3.5603 1.6889 43 1 6.7921 3.5374 4.0176 44 1 5.2650 4.3563 6.8680 45 1 9.1581 4.1450 3.9069 46 1 11.5790 4.4102 4.2714 47 1 13.0990 2.5147 3.8721 48 1 12.1974 0.3515 3.1164 49 1 9.7757 0.0839 2.7600 50 1 3.6983 0.9444 1.1867 51 1 3.9880 0.9150 -0.5697 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317730058.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:21 Heat of formation + Delta-G solvation = -33.627245 kcal Electronic energy + Delta-G solvation = -30959.736948 eV Core-core repulsion = 26859.431981 eV Total energy + Delta-G solvation = -4100.304967 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.30899 -39.08842 -38.47216 -36.32434 -35.79258 -33.65005 -32.28069 -31.51775 -31.06139 -30.42167 -29.58112 -28.01122 -26.56661 -24.57014 -23.79296 -22.98791 -22.36010 -21.91384 -20.69578 -20.14223 -19.87509 -17.62004 -17.18577 -16.71209 -16.37549 -16.13325 -15.67863 -15.45019 -15.23808 -15.05994 -14.67325 -14.58591 -14.22503 -14.14855 -14.08840 -13.74756 -13.31882 -13.10657 -12.91053 -12.83317 -12.71879 -12.38618 -12.25765 -12.15531 -11.98806 -11.88836 -11.59479 -11.14726 -11.09767 -10.98653 -10.88519 -10.84568 -10.72009 -10.47306 -10.13164 -9.83247 -9.79663 -9.48907 -9.10366 -8.71451 -8.64297 -8.41587 -8.20109 -7.15679 -5.88866 -3.20389 1.85082 1.91897 2.79833 3.02855 3.36244 3.43412 3.44748 3.52713 4.08750 4.30158 4.48709 4.61771 4.69703 4.73058 4.92971 4.94181 5.05753 5.12173 5.20781 5.22871 5.26536 5.33562 5.38928 5.41279 5.45152 5.45639 5.54125 5.58193 5.59791 5.66421 5.69476 5.75689 5.76041 5.85680 5.96207 6.02659 6.08258 6.24671 6.40006 6.47535 6.61775 6.66917 6.71211 6.74783 6.92196 6.98493 7.01955 7.27089 7.51950 7.62189 7.84823 8.27088 8.49645 9.40432 9.89973 10.26660 11.32516 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008772 B = 0.003170 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.185631 B = 8829.449086 C =10763.532638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.535 5.535 4 C 0.013 3.987 5 C 0.062 3.938 6 O -0.357 6.357 7 C 0.079 3.921 8 H 0.097 0.903 9 C 0.520 3.480 10 O -0.531 6.531 11 N -0.709 5.709 12 C 0.122 3.878 13 C 0.199 3.801 14 H 0.066 0.934 15 N -0.714 5.714 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.004 4.004 19 N -0.927 5.927 20 Si 0.904 3.096 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.291 1.291 24 C -0.081 4.081 25 C -0.083 4.083 26 C -0.127 4.127 27 C -0.134 4.134 28 C -0.130 4.130 29 C -0.120 4.120 30 C 0.031 3.969 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.034 0.966 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.063 0.937 40 H 0.411 0.589 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.387 0.613 44 H 0.256 0.744 45 H 0.123 0.877 46 H 0.113 0.887 47 H 0.111 0.889 48 H 0.112 0.888 49 H 0.114 0.886 50 H 0.096 0.904 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.305 -6.188 -12.634 14.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.260 5.260 4 C -0.115 4.115 5 C -0.015 4.015 6 O -0.274 6.274 7 C 0.017 3.983 8 H 0.114 0.886 9 C 0.304 3.696 10 O -0.406 6.406 11 N -0.362 5.362 12 C -0.002 4.002 13 C 0.087 3.913 14 H 0.083 0.917 15 N -0.355 5.355 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.201 4.201 19 N -0.574 5.574 20 Si 0.735 3.265 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.218 1.218 24 C -0.085 4.085 25 C -0.102 4.102 26 C -0.145 4.145 27 C -0.152 4.152 28 C -0.148 4.148 29 C -0.139 4.139 30 C -0.098 4.098 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.081 0.919 40 H 0.248 0.752 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.222 0.778 44 H 0.066 0.934 45 H 0.141 0.859 46 H 0.132 0.868 47 H 0.129 0.871 48 H 0.130 0.870 49 H 0.132 0.868 50 H 0.114 0.886 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.958 -5.625 -12.851 14.576 hybrid contribution -0.246 -0.842 1.005 1.334 sum -4.204 -6.467 -11.846 14.136 Atomic orbital electron populations 1.21798 0.94594 1.01676 1.02553 1.22113 0.96296 0.88179 1.01198 1.62225 1.13072 1.16589 1.34117 1.22881 1.01854 0.95961 0.90795 1.22732 0.81739 0.94970 1.02064 1.88108 1.23034 1.76700 1.39592 1.21940 0.93272 0.93311 0.89776 0.88581 1.19936 0.88804 0.78457 0.82443 1.90699 1.63982 1.44657 1.41306 1.45853 1.08689 1.62613 1.19089 1.21601 0.79499 1.01794 0.97295 1.19478 0.87344 0.97010 0.87421 0.91654 1.42471 1.64427 1.16472 1.12117 1.19221 1.29703 0.97688 0.90862 0.91045 1.24713 1.00829 0.96256 0.98321 1.69656 1.42795 1.11337 1.33639 0.86172 0.77512 0.78622 0.84160 1.20548 1.21865 1.21813 1.20967 0.97349 0.93230 0.96978 1.21010 0.94504 0.97849 0.96795 1.21110 0.93963 0.98573 1.00903 1.20981 0.99021 0.93721 1.01517 1.20982 0.95361 0.97208 1.01273 1.21006 0.93273 0.98530 1.01104 1.22664 0.88169 0.96093 1.02838 0.92169 0.91553 0.92780 0.94774 0.90207 0.93867 0.89240 0.88045 0.91920 0.75192 0.91440 0.91444 0.77817 0.93396 0.85892 0.86845 0.87089 0.87007 0.86767 0.88608 0.93392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.85 37.16 0.37 -0.76 16 2 C 0.05 0.45 5.68 -3.83 -0.02 0.43 16 3 N -0.53 -5.79 4.73 -234.31 -1.11 -6.90 16 4 C 0.01 0.13 5.44 -3.72 -0.02 0.11 16 5 C 0.06 0.67 7.01 37.21 0.26 0.93 16 6 O -0.36 -5.38 10.01 -55.04 -0.55 -5.93 16 7 C 0.08 1.13 3.22 -27.83 -0.09 1.04 16 8 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 9 C 0.52 8.77 7.18 -10.99 -0.08 8.69 16 10 O -0.53 -10.89 16.51 -14.26 -0.24 -11.12 16 11 N -0.71 -11.29 5.35 -60.29 -0.32 -11.61 16 12 C 0.12 2.03 5.21 -4.04 -0.02 2.01 16 13 C 0.20 3.55 2.64 -69.08 -0.18 3.37 16 14 H 0.07 1.15 7.94 -51.93 -0.41 0.74 16 15 N -0.71 -15.64 3.81 -54.55 -0.21 -15.85 16 16 C -0.24 -6.11 9.92 -15.06 -0.15 -6.26 16 17 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 18 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 19 N -0.93 -25.99 13.06 55.49 0.72 -25.27 16 20 Si 0.90 21.28 29.55 -169.99 -5.02 16.26 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 C -0.08 -1.44 4.92 -104.62 -0.51 -1.96 16 25 C -0.08 -1.52 9.32 -39.58 -0.37 -1.89 16 26 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 27 C -0.13 -1.97 10.05 -39.59 -0.40 -2.37 16 28 C -0.13 -1.90 10.05 -39.59 -0.40 -2.29 16 29 C -0.12 -1.90 9.67 -39.58 -0.38 -2.28 16 30 C 0.03 0.37 4.88 -3.71 -0.02 0.36 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.38 6.52 -51.93 -0.34 0.04 16 34 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 35 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16 36 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.70 6.38 -51.93 -0.33 0.37 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.41 6.44 8.00 -40.82 -0.33 6.11 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.39 9.23 7.80 -40.82 -0.32 8.91 16 44 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.12 2.40 7.73 -52.49 -0.41 1.99 16 46 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 47 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 48 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 49 H 0.11 1.57 8.04 -52.49 -0.42 1.15 16 50 H 0.10 1.08 7.95 -51.93 -0.41 0.67 16 51 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 415.02 15.07 6.25 6.25 Total: -1.00 -30.90 415.02 -11.41 -42.31 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -8.43 Total: 15.41 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -2.51 Total: -3.55 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -0.91 Total: -59.63 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.79 Total: -17.05 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -30.90 -11.41 -42.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317730058.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.678 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds