Wall clock time and date at job start Wed Apr 1 2020 06:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46894 * 109.47255 * 2 1 4 4 C 1.47009 * 111.00295 * 293.63244 * 3 2 1 5 5 C 1.53093 * 109.26071 * 177.60644 * 4 3 2 6 6 O 1.43015 * 109.25965 * 56.84798 * 5 4 3 7 7 C 1.43027 * 113.77765 * 301.35611 * 6 5 4 8 8 H 1.08998 * 109.46845 * 298.68706 * 7 6 5 9 9 C 1.50697 * 109.54836 * 178.55489 * 7 6 5 10 10 O 1.21287 * 119.99671 * 355.19595 * 9 7 6 11 11 N 1.34770 * 120.00317 * 175.19948 * 9 7 6 12 12 C 1.46499 * 120.00270 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.47161 * 179.97438 * 12 11 9 14 14 H 1.09003 * 109.47153 * 64.99975 * 13 12 11 15 15 N 1.46499 * 109.47162 * 304.99741 * 13 12 11 16 16 C 1.36936 * 119.99968 * 154.99599 * 15 13 12 17 17 H 1.08002 * 119.99980 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99779 * 180.02562 * 16 15 13 19 19 N 1.31609 * 120.00140 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99806 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47171 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47209 * 119.99825 * 20 18 16 23 23 H 1.48496 * 109.47182 * 240.00408 * 20 18 16 24 24 C 1.50702 * 109.47134 * 184.99899 * 13 12 11 25 25 C 1.38234 * 119.99911 * 79.72573 * 24 13 12 26 26 C 1.38238 * 119.99671 * 179.78740 * 25 24 13 27 27 C 1.38236 * 120.00004 * 0.44326 * 26 25 24 28 28 C 1.38227 * 119.99934 * 359.81084 * 27 26 25 29 29 C 1.38235 * 119.99705 * 260.00201 * 24 13 12 30 30 C 1.47016 * 110.99844 * 169.99520 * 3 2 1 31 31 H 1.09001 * 109.47452 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47138 * 300.00366 * 1 2 3 33 33 H 1.09006 * 109.46505 * 59.99885 * 1 2 3 34 34 H 1.09000 * 109.47138 * 239.99634 * 2 1 3 35 35 H 1.09006 * 109.46505 * 120.00115 * 2 1 3 36 36 H 1.09001 * 109.50528 * 297.54402 * 4 3 2 37 37 H 1.09003 * 109.50599 * 57.67193 * 4 3 2 38 38 H 1.08994 * 109.50954 * 176.78275 * 5 4 3 39 39 H 1.09004 * 109.51138 * 296.91641 * 5 4 3 40 40 H 0.97003 * 119.99833 * 0.02562 * 11 9 7 41 41 H 1.09004 * 109.47229 * 299.99567 * 12 11 9 42 42 H 1.08998 * 109.47342 * 60.00016 * 12 11 9 43 43 H 0.97003 * 119.99733 * 335.00416 * 15 13 12 44 44 H 0.96998 * 120.00186 * 179.97438 * 19 18 16 45 45 H 1.07995 * 119.99899 * 359.97438 * 25 24 13 46 46 H 1.08002 * 119.99988 * 180.27260 * 26 25 24 47 47 H 1.08001 * 119.99723 * 179.83224 * 27 26 25 48 48 H 1.08006 * 119.99867 * 180.02562 * 28 27 26 49 49 H 1.07998 * 120.00281 * 359.97438 * 29 24 13 50 50 H 1.09002 * 109.50934 * 302.33071 * 30 3 2 51 51 H 1.09003 * 109.50733 * 62.41665 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6767 2.0651 -1.2573 5 6 2.1517 3.5189 -1.1909 6 8 3.5571 3.5445 -0.9276 7 6 3.9277 2.8910 0.2895 8 1 3.4506 3.3930 1.1312 9 6 5.4248 2.9432 0.4543 10 8 6.1159 3.4083 -0.4272 11 7 5.9956 2.4731 1.5810 12 6 7.4508 2.5244 1.7414 13 6 7.8355 1.9326 3.0989 14 1 7.5804 0.8731 3.1188 15 7 7.1060 2.6307 4.1603 16 6 6.8671 2.0032 5.3538 17 1 7.2169 0.9939 5.5127 18 6 6.1753 2.6645 6.3593 19 7 5.7487 3.8944 6.1655 20 14 5.8501 1.8088 7.9876 21 1 6.4293 0.4419 7.9529 22 1 6.4775 2.5839 9.0882 23 1 4.3855 1.7206 8.2166 24 6 9.3177 2.0966 3.3165 25 6 9.8244 3.3125 3.7357 26 6 11.1835 3.4615 3.9396 27 6 12.0369 2.3974 3.7154 28 6 11.5307 1.1831 3.2912 29 6 10.1711 1.0327 3.0914 30 6 3.4697 1.4310 0.2385 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3632 0.5139 -0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8901 36 1 2.1664 1.5598 -2.0898 37 1 0.5964 2.0413 -1.4010 38 1 1.9507 4.0114 -2.1423 39 1 1.6223 4.0388 -0.3923 40 1 5.4428 2.1008 2.2858 41 1 7.9245 1.9486 0.9462 42 1 7.7859 3.5603 1.6889 43 1 6.7921 3.5374 4.0176 44 1 5.2650 4.3563 6.8680 45 1 9.1581 4.1450 3.9069 46 1 11.5790 4.4102 4.2714 47 1 13.0990 2.5147 3.8721 48 1 12.1974 0.3515 3.1164 49 1 9.7757 0.0839 2.7600 50 1 3.6983 0.9444 1.1867 51 1 3.9880 0.9150 -0.5697 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317730058.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:20 Heat of formation + Delta-G solvation = -53.392433 kcal Electronic energy + Delta-G solvation = -30960.594030 eV Core-core repulsion = 26859.431981 eV Total energy + Delta-G solvation = -4101.162050 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.47037 -40.34160 -39.69840 -37.47888 -37.07178 -35.26599 -33.82973 -32.63021 -31.82382 -31.69107 -31.17467 -29.28212 -27.69695 -25.73561 -25.35634 -24.25428 -23.37663 -23.13263 -21.64610 -21.45180 -21.17326 -19.33429 -18.52534 -17.94900 -17.56042 -17.20173 -16.85130 -16.65973 -16.46625 -16.24734 -15.92882 -15.71055 -15.68361 -15.38143 -15.23382 -15.01760 -14.63267 -14.49438 -14.18019 -14.05330 -13.90502 -13.75007 -13.40782 -13.06196 -12.91349 -12.87222 -12.81249 -12.72253 -12.50459 -12.41042 -12.14253 -11.98439 -11.82238 -11.79645 -11.77199 -11.61886 -11.03726 -10.87162 -10.74395 -10.12352 -9.66832 -9.51969 -9.48238 -9.02079 -7.90523 -5.19917 0.59327 0.65790 1.45674 1.48893 1.51723 1.59130 1.81881 2.57610 2.65443 2.99075 3.05877 3.44166 3.61784 3.70023 3.80605 3.88203 3.93862 4.03894 4.06247 4.17196 4.22814 4.25646 4.28992 4.35583 4.37644 4.42338 4.49130 4.50045 4.58889 4.64496 4.70018 4.71887 4.80276 4.84046 4.87873 4.98909 5.03713 5.08663 5.22559 5.31650 5.35206 5.38909 5.57629 5.70242 5.74388 5.82354 5.94729 5.94898 5.98857 6.26531 6.30028 6.50260 7.13601 7.37873 8.04947 8.31654 9.31785 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008772 B = 0.003170 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.185631 B = 8829.449086 C =10763.532638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 N -0.543 5.543 4 C 0.016 3.984 5 C 0.055 3.945 6 O -0.386 6.386 7 C 0.084 3.916 8 H 0.096 0.904 9 C 0.519 3.481 10 O -0.571 6.571 11 N -0.701 5.701 12 C 0.132 3.868 13 C 0.206 3.794 14 H 0.075 0.925 15 N -0.718 5.718 16 C -0.228 4.228 17 H 0.075 0.925 18 C -0.062 4.062 19 N -0.963 5.963 20 Si 0.960 3.040 21 H -0.268 1.268 22 H -0.303 1.303 23 H -0.294 1.294 24 C -0.101 4.101 25 C -0.110 4.110 26 C -0.137 4.137 27 C -0.131 4.131 28 C -0.127 4.127 29 C -0.126 4.126 30 C 0.040 3.960 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.040 0.960 37 H 0.113 0.887 38 H 0.123 0.877 39 H 0.065 0.935 40 H 0.414 0.586 41 H 0.080 0.920 42 H 0.048 0.952 43 H 0.375 0.625 44 H 0.249 0.751 45 H 0.095 0.905 46 H 0.127 0.873 47 H 0.143 0.857 48 H 0.147 0.853 49 H 0.136 0.864 50 H 0.101 0.899 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.872 -8.513 -13.143 16.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 N -0.268 5.268 4 C -0.111 4.111 5 C -0.021 4.021 6 O -0.304 6.304 7 C 0.023 3.977 8 H 0.114 0.886 9 C 0.305 3.695 10 O -0.450 6.450 11 N -0.353 5.353 12 C 0.008 3.992 13 C 0.096 3.904 14 H 0.093 0.907 15 N -0.358 5.358 16 C -0.359 4.359 17 H 0.093 0.907 18 C -0.255 4.255 19 N -0.613 5.613 20 Si 0.791 3.209 21 H -0.192 1.192 22 H -0.231 1.231 23 H -0.221 1.221 24 C -0.105 4.105 25 C -0.129 4.129 26 C -0.155 4.155 27 C -0.149 4.149 28 C -0.144 4.144 29 C -0.144 4.144 30 C -0.089 4.089 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.131 0.869 38 H 0.140 0.860 39 H 0.084 0.916 40 H 0.251 0.749 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.208 0.792 44 H 0.058 0.942 45 H 0.114 0.886 46 H 0.145 0.855 47 H 0.161 0.839 48 H 0.164 0.836 49 H 0.153 0.847 50 H 0.120 0.880 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.514 -8.004 -13.373 15.977 hybrid contribution -0.284 -0.133 1.074 1.119 sum -3.798 -8.137 -12.299 15.228 Atomic orbital electron populations 1.21767 0.93283 1.02584 1.02482 1.22196 0.97315 0.87098 1.01367 1.62264 1.11847 1.17874 1.34859 1.22908 1.03162 0.94915 0.90154 1.23015 0.79684 0.96167 1.03233 1.88068 1.25642 1.77097 1.39628 1.21846 0.91130 0.94914 0.89835 0.88604 1.20435 0.89951 0.77352 0.81794 1.90669 1.65156 1.46520 1.42631 1.45804 1.08505 1.62107 1.18934 1.21467 0.79922 1.00778 0.97041 1.19541 0.87481 0.96822 0.86544 0.90726 1.42503 1.64991 1.15955 1.12343 1.19487 1.27470 0.97508 0.91462 0.90673 1.25329 1.02056 0.96931 1.01149 1.69796 1.44597 1.12781 1.34139 0.85276 0.76912 0.78057 0.80694 1.19238 1.23097 1.22136 1.20869 0.97057 0.93966 0.98571 1.20958 0.95440 0.97563 0.98945 1.21341 0.93281 1.00041 1.00881 1.21386 1.00446 0.93089 0.99994 1.21415 0.95252 0.98173 0.99596 1.21287 0.93880 0.98587 1.00677 1.22535 0.89259 0.94185 1.02929 0.90822 0.92377 0.92028 0.94361 0.90299 0.94180 0.86877 0.85952 0.91626 0.74867 0.90169 0.93324 0.79249 0.94231 0.88641 0.85535 0.83884 0.83555 0.84652 0.88031 0.94037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.85 71.98 0.71 -1.17 16 2 C 0.05 0.78 5.68 86.31 0.49 1.27 16 3 N -0.54 -11.10 4.73 -895.21 -4.23 -15.33 16 4 C 0.02 0.29 5.44 86.31 0.47 0.76 16 5 C 0.06 1.14 7.01 72.01 0.50 1.64 16 6 O -0.39 -11.71 10.01 -130.04 -1.30 -13.01 16 7 C 0.08 2.45 3.22 29.88 0.10 2.54 16 8 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 9 C 0.52 18.00 7.18 87.66 0.63 18.63 16 10 O -0.57 -24.17 16.51 15.89 0.26 -23.91 16 11 N -0.70 -22.82 5.35 -463.06 -2.48 -25.30 16 12 C 0.13 4.48 5.21 86.38 0.45 4.93 16 13 C 0.21 7.36 2.64 44.25 0.12 7.48 16 14 H 0.07 2.54 7.94 -2.39 -0.02 2.52 16 15 N -0.72 -32.11 3.81 -326.48 -1.24 -33.36 16 16 C -0.23 -11.42 9.92 84.03 0.83 -10.59 16 17 H 0.08 3.68 7.83 -2.91 -0.02 3.66 16 18 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 19 N -0.96 -55.49 13.06 21.65 0.28 -55.20 16 20 Si 0.96 44.05 29.55 68.60 2.03 46.08 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 22 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 24 C -0.10 -3.55 4.92 -19.87 -0.10 -3.65 16 25 C -0.11 -4.11 9.32 22.27 0.21 -3.90 16 26 C -0.14 -4.32 10.05 22.27 0.22 -4.09 16 27 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 28 C -0.13 -3.25 10.05 22.27 0.22 -3.02 16 29 C -0.13 -3.68 9.67 22.27 0.22 -3.47 16 30 C 0.04 0.94 4.88 86.32 0.42 1.37 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 0.71 6.52 -2.38 -0.02 0.69 16 34 H 0.04 0.61 8.12 -2.39 -0.02 0.59 16 35 H 0.08 1.30 8.04 -2.38 -0.02 1.29 16 36 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.11 1.48 6.38 -2.39 -0.02 1.47 16 38 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.41 13.16 8.00 -92.71 -0.74 12.42 16 41 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 42 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.37 18.62 7.80 -92.71 -0.72 17.90 16 44 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 45 H 0.10 3.98 7.73 -2.91 -0.02 3.96 16 46 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 47 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 48 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 49 H 0.14 3.31 8.04 -2.91 -0.02 3.29 16 50 H 0.10 2.25 7.95 -2.39 -0.02 2.23 16 51 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -67.64 415.02 -1.04 -68.68 By element: Atomic # 1 Polarization: 49.24 SS G_CDS: -0.54 Total: 48.71 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 6.18 Total: 2.65 kcal Atomic # 7 Polarization: -121.52 SS G_CDS: -7.67 Total: -129.19 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -1.04 Total: -36.92 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -67.64 -1.04 -68.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317730058.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.286 kcal (2) G-P(sol) polarization free energy of solvation -67.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds