Wall clock time and date at job start Wed Apr 1 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46899 * 109.46955 * 2 1 4 4 C 1.47012 * 110.99899 * 293.95509 * 3 2 1 5 5 C 1.53106 * 109.25493 * 182.39069 * 4 3 2 6 6 O 1.43010 * 109.25757 * 303.14960 * 5 4 3 7 7 C 1.43019 * 113.74027 * 58.67461 * 6 5 4 8 8 H 1.08997 * 109.50725 * 61.30272 * 7 6 5 9 9 C 1.50700 * 109.50799 * 181.39208 * 7 6 5 10 10 O 1.21276 * 119.99788 * 4.99456 * 9 7 6 11 11 N 1.34781 * 119.99946 * 184.99846 * 9 7 6 12 12 C 1.46498 * 119.99881 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.46790 * 180.02562 * 12 11 9 14 14 H 1.09009 * 109.46897 * 294.99554 * 13 12 11 15 15 N 1.46490 * 109.47363 * 54.99729 * 13 12 11 16 16 C 1.36935 * 120.00121 * 204.99585 * 15 13 12 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47055 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.46653 * 299.99639 * 20 18 16 23 23 H 1.48495 * 109.47483 * 60.00002 * 20 18 16 24 24 C 1.50700 * 109.46723 * 175.00214 * 13 12 11 25 25 C 1.38237 * 119.99703 * 279.72129 * 24 13 12 26 26 C 1.38239 * 119.99563 * 179.74660 * 25 24 13 27 27 C 1.38232 * 120.00352 * 0.55433 * 26 25 24 28 28 C 1.38236 * 119.99771 * 359.70034 * 27 26 25 29 29 C 1.38235 * 120.00198 * 100.00206 * 24 13 12 30 30 C 1.47018 * 110.99867 * 57.59234 * 3 2 1 31 31 H 1.08998 * 109.47535 * 299.99618 * 1 2 3 32 32 H 1.08993 * 109.47645 * 60.00369 * 1 2 3 33 33 H 1.09004 * 109.46809 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46924 * 240.00036 * 2 1 3 35 35 H 1.09004 * 109.47197 * 119.99868 * 2 1 3 36 36 H 1.08999 * 109.50894 * 62.46084 * 4 3 2 37 37 H 1.08994 * 109.50553 * 302.32137 * 4 3 2 38 38 H 1.08996 * 109.50454 * 183.21350 * 5 4 3 39 39 H 1.08997 * 109.53986 * 63.10767 * 5 4 3 40 40 H 0.97000 * 119.99607 * 0.02562 * 11 9 7 41 41 H 1.08995 * 109.47296 * 60.00121 * 12 11 9 42 42 H 1.08998 * 109.46694 * 299.99607 * 12 11 9 43 43 H 0.97000 * 120.00577 * 25.00185 * 15 13 12 44 44 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 45 45 H 1.08000 * 120.00093 * 359.97438 * 25 24 13 46 46 H 1.08004 * 119.99792 * 180.27302 * 26 25 24 47 47 H 1.07998 * 120.00085 * 179.72274 * 27 26 25 48 48 H 1.07999 * 120.00203 * 180.02562 * 28 27 26 49 49 H 1.08004 * 119.99974 * 359.97438 * 29 24 13 50 50 H 1.08992 * 109.50670 * 57.67050 * 30 3 2 51 51 H 1.09003 * 109.50363 * 297.53882 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6698 2.0674 -1.2543 5 6 2.2491 3.4845 -1.2366 6 8 1.7593 4.1800 -0.0870 7 6 2.0826 3.5434 1.1522 8 1 3.1657 3.4937 1.2642 9 6 1.4944 4.3338 2.2926 10 8 0.7854 5.2909 2.0647 11 7 1.7565 3.9769 3.5656 12 6 1.1851 4.7456 4.6741 13 6 1.6354 4.1356 6.0031 14 1 1.2187 3.1332 6.1024 15 7 3.0981 4.0619 6.0360 16 6 3.7193 3.1346 6.8293 17 1 3.1309 2.4573 7.4304 18 6 5.1053 3.0651 6.8609 19 7 5.8225 3.8910 6.1286 20 14 5.9527 1.7996 7.9426 21 1 7.4248 1.9314 7.7984 22 1 5.5724 2.0262 9.3601 23 1 5.5345 0.4359 7.5296 24 6 1.1499 4.9963 7.1409 25 6 1.8388 6.1456 7.4808 26 6 1.3905 6.9379 8.5211 27 6 0.2600 6.5749 9.2289 28 6 -0.4259 5.4228 8.8923 29 6 0.0191 4.6335 7.8484 30 6 1.5017 2.1269 1.1588 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5137 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.5853 2.1188 -1.3505 37 1 2.0850 1.5150 -2.0972 38 1 1.9442 4.0136 -2.1394 39 1 3.3371 3.4332 -1.1948 40 1 2.3239 3.2116 3.7477 41 1 0.0973 4.7193 4.6119 42 1 1.5277 5.7786 4.6144 43 1 3.6267 4.6700 5.4959 44 1 5.3824 4.5478 5.5667 45 1 2.7251 6.4264 6.9312 46 1 1.9262 7.8381 8.7839 47 1 -0.0877 7.1915 10.0445 48 1 -1.3094 5.1394 9.4450 49 1 -0.5167 3.7334 7.5854 50 1 1.7940 1.6178 2.0771 51 1 0.4144 2.1792 1.1011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317730059.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:24 Heat of formation + Delta-G solvation = -31.112133 kcal Electronic energy + Delta-G solvation = -31189.854905 eV Core-core repulsion = 27089.659002 eV Total energy + Delta-G solvation = -4100.195903 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.42916 -39.18536 -38.57036 -36.49807 -35.94777 -33.84537 -32.37683 -31.47016 -30.91374 -30.47560 -29.42563 -27.83467 -26.60820 -24.86240 -23.61703 -23.20943 -22.65917 -21.99874 -20.46989 -20.18099 -19.98057 -17.66733 -17.35836 -16.84727 -16.48793 -16.16690 -15.63933 -15.47191 -15.21308 -15.04262 -14.92701 -14.58711 -14.31694 -14.27302 -14.02201 -13.74675 -13.68195 -13.21932 -12.93950 -12.87922 -12.79012 -12.69119 -12.36994 -12.15500 -12.11064 -11.89592 -11.59976 -11.15133 -11.12573 -10.99966 -10.83712 -10.82303 -10.68340 -10.41229 -10.05605 -9.85601 -9.56322 -9.31562 -9.10866 -8.80521 -8.62530 -8.47541 -8.25411 -7.22391 -6.19671 -3.23690 1.79250 1.85744 2.72801 2.96234 3.46479 3.49646 3.53612 3.66892 4.03387 4.23994 4.57316 4.59075 4.63598 4.71032 4.85883 4.91292 4.94033 5.06480 5.11893 5.14827 5.19122 5.28419 5.33634 5.35649 5.41686 5.45986 5.47505 5.52443 5.53634 5.61898 5.65596 5.68521 5.69282 5.75240 5.92463 5.96017 6.01250 6.11775 6.32024 6.40960 6.54350 6.63002 6.65500 6.68719 6.86631 6.93013 6.95543 7.19659 7.45440 7.71175 7.75842 8.41302 8.64276 9.05400 9.92579 10.05285 11.27148 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008779 B = 0.003239 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3188.637080 B = 8642.666741 C =10338.414625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.050 3.950 3 N -0.532 5.532 4 C 0.012 3.988 5 C 0.062 3.938 6 O -0.356 6.356 7 C 0.078 3.922 8 H 0.095 0.905 9 C 0.519 3.481 10 O -0.529 6.529 11 N -0.711 5.711 12 C 0.121 3.879 13 C 0.204 3.796 14 H 0.067 0.933 15 N -0.724 5.724 16 C -0.335 4.335 17 H 0.065 0.935 18 C -0.036 4.036 19 N -0.938 5.938 20 Si 1.077 2.923 21 H -0.285 1.285 22 H -0.296 1.296 23 H -0.295 1.295 24 C -0.081 4.081 25 C -0.084 4.084 26 C -0.127 4.127 27 C -0.133 4.133 28 C -0.129 4.129 29 C -0.120 4.120 30 C 0.028 3.972 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.062 0.938 40 H 0.411 0.589 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.370 0.630 44 H 0.255 0.745 45 H 0.119 0.881 46 H 0.114 0.886 47 H 0.112 0.888 48 H 0.113 0.887 49 H 0.115 0.885 50 H 0.095 0.905 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.964 -4.280 -9.504 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.078 4.078 3 N -0.256 5.256 4 C -0.116 4.116 5 C -0.016 4.016 6 O -0.274 6.274 7 C 0.016 3.984 8 H 0.113 0.887 9 C 0.303 3.697 10 O -0.405 6.405 11 N -0.365 5.365 12 C -0.003 4.003 13 C 0.093 3.907 14 H 0.084 0.916 15 N -0.367 5.367 16 C -0.465 4.465 17 H 0.083 0.917 18 C -0.235 4.235 19 N -0.582 5.582 20 Si 0.907 3.093 21 H -0.211 1.211 22 H -0.223 1.223 23 H -0.222 1.222 24 C -0.085 4.085 25 C -0.103 4.103 26 C -0.145 4.145 27 C -0.151 4.151 28 C -0.147 4.147 29 C -0.138 4.138 30 C -0.101 4.101 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.081 0.919 40 H 0.247 0.753 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.204 0.796 44 H 0.066 0.934 45 H 0.137 0.863 46 H 0.132 0.868 47 H 0.130 0.870 48 H 0.131 0.869 49 H 0.133 0.867 50 H 0.113 0.887 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.652 -4.193 -9.044 13.876 hybrid contribution -1.787 0.159 -0.337 1.826 sum -11.440 -4.035 -9.381 15.334 Atomic orbital electron populations 1.22452 0.98057 1.02563 1.02285 1.22198 0.93042 0.89177 1.03360 1.62433 1.58821 1.02400 1.01986 1.22861 0.99651 0.96070 0.92989 1.22741 0.98879 0.91127 0.88813 1.88109 1.78105 1.48579 1.12606 1.21940 1.00445 0.90812 0.85169 0.88711 1.19976 0.81249 0.84901 0.83550 1.90699 1.37312 1.27979 1.84484 1.45876 1.52109 1.33921 1.04564 1.21616 0.97839 0.95620 0.85230 1.19405 0.86486 0.95943 0.88824 0.91550 1.42462 0.98976 1.41839 1.53388 1.19970 0.92277 1.12193 1.22092 0.91681 1.25708 0.92755 1.02983 1.02009 1.70911 1.37101 1.21240 1.28970 0.83286 0.76356 0.74584 0.75035 1.21053 1.22300 1.22198 1.20934 0.93770 0.95312 0.98481 1.20954 0.98638 0.93957 0.96731 1.21107 0.96870 0.99884 0.96633 1.20990 0.96543 0.97475 1.00122 1.20994 1.00010 0.95648 0.98043 1.21001 0.96769 0.99625 0.96438 1.22701 0.98701 0.93331 0.95363 0.92149 0.92540 0.91813 0.90372 0.90003 0.93472 0.89462 0.88019 0.91925 0.75273 0.91311 0.91547 0.79613 0.93350 0.86275 0.86793 0.86971 0.86894 0.86739 0.88721 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.60 9.20 37.16 0.34 -1.26 16 2 C 0.05 0.43 6.10 -3.82 -0.02 0.41 16 3 N -0.53 -5.66 4.94 -234.30 -1.16 -6.81 16 4 C 0.01 0.12 5.33 -3.71 -0.02 0.10 16 5 C 0.06 0.65 7.01 37.21 0.26 0.92 16 6 O -0.36 -5.32 10.01 -55.06 -0.55 -5.87 16 7 C 0.08 1.11 3.22 -27.83 -0.09 1.02 16 8 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 9 C 0.52 8.72 7.18 -10.98 -0.08 8.64 16 10 O -0.53 -10.80 16.51 -14.27 -0.24 -11.03 16 11 N -0.71 -11.29 5.35 -60.30 -0.32 -11.62 16 12 C 0.12 2.01 5.21 -4.04 -0.02 1.99 16 13 C 0.20 3.70 2.65 -69.09 -0.18 3.52 16 14 H 0.07 1.20 7.94 -51.92 -0.41 0.79 16 15 N -0.72 -15.91 3.79 -54.55 -0.21 -16.12 16 16 C -0.33 -8.52 9.92 -15.06 -0.15 -8.67 16 17 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 18 C -0.04 -0.97 5.50 -17.43 -0.10 -1.07 16 19 N -0.94 -27.12 13.70 55.49 0.76 -26.36 16 20 Si 1.08 24.73 29.92 -169.99 -5.09 19.64 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.30 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.08 -1.45 4.92 -104.62 -0.52 -1.97 16 25 C -0.08 -1.55 9.33 -39.58 -0.37 -1.92 16 26 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 27 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 28 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 29 C -0.12 -1.91 9.67 -39.58 -0.38 -2.29 16 30 C 0.03 0.33 4.37 -3.71 -0.02 0.31 16 31 H 0.06 0.56 6.42 -51.93 -0.33 0.23 16 32 H 0.06 0.47 6.61 -51.93 -0.34 0.12 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.46 6.59 -51.93 -0.34 0.12 16 37 H 0.09 0.66 8.12 -51.93 -0.42 0.24 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.41 6.45 8.02 -40.82 -0.33 6.12 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.37 8.58 6.63 -40.82 -0.27 8.31 16 44 H 0.26 7.27 6.77 -40.82 -0.28 6.99 16 45 H 0.12 2.33 7.71 -52.49 -0.40 1.92 16 46 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 47 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 48 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 49 H 0.11 1.60 8.04 -52.48 -0.42 1.18 16 50 H 0.09 1.08 8.02 -51.93 -0.42 0.67 16 51 H 0.05 0.67 6.41 -51.93 -0.33 0.33 16 LS Contribution 409.65 15.07 6.17 6.17 Total: -1.00 -31.84 409.65 -11.32 -43.16 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: -8.16 Total: 16.20 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -2.53 Total: -7.36 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.93 Total: -60.91 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.79 Total: -16.91 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.09 Total: 19.64 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.84 -11.32 -43.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317730059.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.050 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds