Wall clock time and date at job start Wed Apr 1 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46899 * 109.46955 * 2 1 4 4 C 1.47012 * 110.99899 * 293.95509 * 3 2 1 5 5 C 1.53106 * 109.25493 * 182.39069 * 4 3 2 6 6 O 1.43010 * 109.25757 * 303.14960 * 5 4 3 7 7 C 1.43019 * 113.74027 * 58.67461 * 6 5 4 8 8 H 1.08997 * 109.50725 * 61.30272 * 7 6 5 9 9 C 1.50700 * 109.50799 * 181.39208 * 7 6 5 10 10 O 1.21276 * 119.99788 * 4.99456 * 9 7 6 11 11 N 1.34781 * 119.99946 * 184.99846 * 9 7 6 12 12 C 1.46498 * 119.99881 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.46790 * 180.02562 * 12 11 9 14 14 H 1.09009 * 109.46897 * 294.99554 * 13 12 11 15 15 N 1.46490 * 109.47363 * 54.99729 * 13 12 11 16 16 C 1.36935 * 120.00121 * 204.99585 * 15 13 12 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47055 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.46653 * 299.99639 * 20 18 16 23 23 H 1.48495 * 109.47483 * 60.00002 * 20 18 16 24 24 C 1.50700 * 109.46723 * 175.00214 * 13 12 11 25 25 C 1.38237 * 119.99703 * 279.72129 * 24 13 12 26 26 C 1.38239 * 119.99563 * 179.74660 * 25 24 13 27 27 C 1.38232 * 120.00352 * 0.55433 * 26 25 24 28 28 C 1.38236 * 119.99771 * 359.70034 * 27 26 25 29 29 C 1.38235 * 120.00198 * 100.00206 * 24 13 12 30 30 C 1.47018 * 110.99867 * 57.59234 * 3 2 1 31 31 H 1.08998 * 109.47535 * 299.99618 * 1 2 3 32 32 H 1.08993 * 109.47645 * 60.00369 * 1 2 3 33 33 H 1.09004 * 109.46809 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46924 * 240.00036 * 2 1 3 35 35 H 1.09004 * 109.47197 * 119.99868 * 2 1 3 36 36 H 1.08999 * 109.50894 * 62.46084 * 4 3 2 37 37 H 1.08994 * 109.50553 * 302.32137 * 4 3 2 38 38 H 1.08996 * 109.50454 * 183.21350 * 5 4 3 39 39 H 1.08997 * 109.53986 * 63.10767 * 5 4 3 40 40 H 0.97000 * 119.99607 * 0.02562 * 11 9 7 41 41 H 1.08995 * 109.47296 * 60.00121 * 12 11 9 42 42 H 1.08998 * 109.46694 * 299.99607 * 12 11 9 43 43 H 0.97000 * 120.00577 * 25.00185 * 15 13 12 44 44 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 45 45 H 1.08000 * 120.00093 * 359.97438 * 25 24 13 46 46 H 1.08004 * 119.99792 * 180.27302 * 26 25 24 47 47 H 1.07998 * 120.00085 * 179.72274 * 27 26 25 48 48 H 1.07999 * 120.00203 * 180.02562 * 28 27 26 49 49 H 1.08004 * 119.99974 * 359.97438 * 29 24 13 50 50 H 1.08992 * 109.50670 * 57.67050 * 30 3 2 51 51 H 1.09003 * 109.50363 * 297.53882 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6698 2.0674 -1.2543 5 6 2.2491 3.4845 -1.2366 6 8 1.7593 4.1800 -0.0870 7 6 2.0826 3.5434 1.1522 8 1 3.1657 3.4937 1.2642 9 6 1.4944 4.3338 2.2926 10 8 0.7854 5.2909 2.0647 11 7 1.7565 3.9769 3.5656 12 6 1.1851 4.7456 4.6741 13 6 1.6354 4.1356 6.0031 14 1 1.2187 3.1332 6.1024 15 7 3.0981 4.0619 6.0360 16 6 3.7193 3.1346 6.8293 17 1 3.1309 2.4573 7.4304 18 6 5.1053 3.0651 6.8609 19 7 5.8225 3.8910 6.1286 20 14 5.9527 1.7996 7.9426 21 1 7.4248 1.9314 7.7984 22 1 5.5724 2.0262 9.3601 23 1 5.5345 0.4359 7.5296 24 6 1.1499 4.9963 7.1409 25 6 1.8388 6.1456 7.4808 26 6 1.3905 6.9379 8.5211 27 6 0.2600 6.5749 9.2289 28 6 -0.4259 5.4228 8.8923 29 6 0.0191 4.6335 7.8484 30 6 1.5017 2.1269 1.1588 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5137 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.5853 2.1188 -1.3505 37 1 2.0850 1.5150 -2.0972 38 1 1.9442 4.0136 -2.1394 39 1 3.3371 3.4332 -1.1948 40 1 2.3239 3.2116 3.7477 41 1 0.0973 4.7193 4.6119 42 1 1.5277 5.7786 4.6144 43 1 3.6267 4.6700 5.4959 44 1 5.3824 4.5478 5.5667 45 1 2.7251 6.4264 6.9312 46 1 1.9262 7.8381 8.7839 47 1 -0.0877 7.1915 10.0445 48 1 -1.3094 5.1394 9.4450 49 1 -0.5167 3.7334 7.5854 50 1 1.7940 1.6178 2.0771 51 1 0.4144 2.1792 1.1011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317730059.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:23 Heat of formation + Delta-G solvation = -51.917655 kcal Electronic energy + Delta-G solvation = -31190.757101 eV Core-core repulsion = 27089.659002 eV Total energy + Delta-G solvation = -4101.098098 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.57136 -40.44606 -39.80130 -37.65826 -37.25238 -35.49721 -33.92375 -32.54679 -31.74433 -31.69555 -31.02854 -29.14018 -27.65530 -25.96338 -25.38083 -24.36645 -23.72195 -23.27242 -21.75621 -21.42777 -21.02069 -19.45144 -18.69518 -18.10258 -17.68294 -17.24993 -16.75841 -16.69487 -16.38385 -16.24428 -16.06773 -15.86503 -15.70553 -15.51740 -15.43106 -14.91552 -14.84787 -14.64061 -14.25046 -14.12932 -13.91014 -13.70967 -13.46112 -13.41917 -12.94807 -12.81746 -12.73506 -12.69306 -12.52424 -12.45735 -12.08779 -11.95415 -11.90274 -11.76073 -11.62439 -11.26856 -11.03857 -10.91037 -10.80427 -10.22045 -9.73954 -9.58952 -9.44438 -9.12212 -8.30936 -5.28375 0.52320 0.58520 1.38455 1.61640 1.69376 1.74878 1.85601 2.66922 2.72479 2.93176 3.00263 3.45634 3.57927 3.60708 3.68226 3.83755 3.91526 3.92967 4.05873 4.07297 4.14775 4.18198 4.24850 4.27789 4.28325 4.34555 4.35780 4.44000 4.53285 4.58251 4.60465 4.71828 4.74138 4.75602 4.84801 4.94244 4.94402 4.98189 5.14779 5.23709 5.25194 5.29867 5.63632 5.64988 5.67121 5.79372 5.87226 5.92952 5.95307 6.20598 6.41136 6.54916 7.04734 7.09212 7.98444 8.10381 9.19228 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008779 B = 0.003239 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3188.637080 B = 8642.666741 C =10338.414625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.049 3.951 3 N -0.541 5.541 4 C 0.015 3.985 5 C 0.054 3.946 6 O -0.385 6.385 7 C 0.083 3.917 8 H 0.095 0.905 9 C 0.519 3.481 10 O -0.569 6.569 11 N -0.703 5.703 12 C 0.132 3.868 13 C 0.211 3.789 14 H 0.072 0.928 15 N -0.729 5.729 16 C -0.318 4.318 17 H 0.066 0.934 18 C -0.093 4.093 19 N -0.973 5.973 20 Si 1.119 2.881 21 H -0.299 1.299 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.102 4.102 25 C -0.113 4.113 26 C -0.137 4.137 27 C -0.130 4.130 28 C -0.125 4.125 29 C -0.126 4.126 30 C 0.037 3.963 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.113 0.887 38 H 0.123 0.877 39 H 0.065 0.935 40 H 0.413 0.587 41 H 0.081 0.919 42 H 0.049 0.951 43 H 0.361 0.639 44 H 0.244 0.756 45 H 0.092 0.908 46 H 0.128 0.872 47 H 0.146 0.854 48 H 0.149 0.851 49 H 0.135 0.865 50 H 0.097 0.903 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.662 -5.916 -8.927 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.078 4.078 3 N -0.265 5.265 4 C -0.112 4.112 5 C -0.022 4.022 6 O -0.304 6.304 7 C 0.022 3.978 8 H 0.113 0.887 9 C 0.305 3.695 10 O -0.448 6.448 11 N -0.356 5.356 12 C 0.008 3.992 13 C 0.102 3.898 14 H 0.090 0.910 15 N -0.371 5.371 16 C -0.449 4.449 17 H 0.084 0.916 18 C -0.285 4.285 19 N -0.621 5.621 20 Si 0.946 3.054 21 H -0.225 1.225 22 H -0.214 1.214 23 H -0.200 1.200 24 C -0.105 4.105 25 C -0.131 4.131 26 C -0.155 4.155 27 C -0.147 4.147 28 C -0.142 4.142 29 C -0.145 4.145 30 C -0.091 4.091 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.131 0.869 38 H 0.140 0.860 39 H 0.083 0.917 40 H 0.250 0.750 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.193 0.807 44 H 0.054 0.946 45 H 0.110 0.890 46 H 0.146 0.854 47 H 0.164 0.836 48 H 0.166 0.834 49 H 0.153 0.847 50 H 0.116 0.884 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.401 -5.857 -8.464 15.360 hybrid contribution -1.374 0.729 -0.510 1.637 sum -12.775 -5.128 -8.974 16.433 Atomic orbital electron populations 1.22402 0.97695 1.03226 1.01556 1.22278 0.93313 0.87993 1.04206 1.62456 1.59039 1.03210 1.01818 1.22895 0.99582 0.95497 0.93259 1.23033 0.99154 0.92022 0.88007 1.88069 1.78696 1.50041 1.13584 1.21850 1.00107 0.91527 0.84326 0.88740 1.20485 0.80473 0.84421 0.84168 1.90669 1.39291 1.29769 1.85038 1.45823 1.51705 1.33626 1.04426 1.21468 0.98332 0.94627 0.84815 1.19459 0.84191 0.96415 0.89761 0.91028 1.42490 1.00587 1.41101 1.52883 1.20193 0.92291 1.11595 1.20838 0.91627 1.26847 0.94076 1.04406 1.03191 1.71006 1.37452 1.22706 1.30928 0.82712 0.74676 0.73878 0.74150 1.22498 1.21399 1.19995 1.20840 0.95258 0.95528 0.98901 1.20918 0.98639 0.95367 0.98193 1.21350 0.97786 1.00159 0.96167 1.21407 0.95394 0.97732 1.00208 1.21435 1.00673 0.94891 0.97242 1.21283 0.96101 1.00595 0.96491 1.22551 0.98098 0.92054 0.96435 0.93561 0.92550 0.90441 0.88613 0.90103 0.93715 0.86891 0.85958 0.91664 0.75009 0.90122 0.93302 0.80677 0.94573 0.88971 0.85406 0.83644 0.83358 0.84735 0.88429 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.82 9.20 71.98 0.66 -2.16 16 2 C 0.05 0.76 6.10 86.30 0.53 1.29 16 3 N -0.54 -10.79 4.94 -895.20 -4.42 -15.20 16 4 C 0.02 0.27 5.33 86.32 0.46 0.73 16 5 C 0.05 1.10 7.01 72.02 0.50 1.60 16 6 O -0.39 -11.62 10.01 -130.02 -1.30 -12.93 16 7 C 0.08 2.42 3.22 29.88 0.10 2.52 16 8 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 9 C 0.52 18.01 7.18 87.66 0.63 18.64 16 10 O -0.57 -24.06 16.51 15.94 0.26 -23.80 16 11 N -0.70 -23.05 5.35 -463.07 -2.48 -25.53 16 12 C 0.13 4.52 5.21 86.38 0.45 4.97 16 13 C 0.21 7.73 2.65 44.25 0.12 7.84 16 14 H 0.07 2.55 7.94 -2.38 -0.02 2.53 16 15 N -0.73 -32.91 3.79 -326.51 -1.24 -34.15 16 16 C -0.32 -16.28 9.92 84.03 0.83 -15.45 16 17 H 0.07 3.32 7.83 -2.91 -0.02 3.30 16 18 C -0.09 -5.07 5.50 84.86 0.47 -4.60 16 19 N -0.97 -57.91 13.70 21.65 0.30 -57.61 16 20 Si 1.12 49.95 29.92 68.60 2.05 52.00 16 21 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 22 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 C -0.10 -3.64 4.92 -19.87 -0.10 -3.74 16 25 C -0.11 -4.23 9.33 22.27 0.21 -4.02 16 26 C -0.14 -4.32 10.05 22.27 0.22 -4.09 16 27 C -0.13 -3.44 10.05 22.27 0.22 -3.21 16 28 C -0.12 -3.22 10.05 22.27 0.22 -3.00 16 29 C -0.13 -3.77 9.67 22.27 0.22 -3.55 16 30 C 0.04 0.89 4.37 86.31 0.38 1.27 16 31 H 0.05 0.82 6.42 -2.39 -0.02 0.80 16 32 H 0.06 0.84 6.61 -2.39 -0.02 0.82 16 33 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.10 1.17 8.11 -2.39 -0.02 1.15 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.04 0.81 6.59 -2.39 -0.02 0.80 16 37 H 0.11 1.38 8.12 -2.39 -0.02 1.36 16 38 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.41 13.31 8.02 -92.71 -0.74 12.57 16 41 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.36 17.61 6.63 -92.71 -0.61 17.00 16 44 H 0.24 14.52 6.77 -92.71 -0.63 13.89 16 45 H 0.09 3.87 7.71 -2.91 -0.02 3.84 16 46 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 47 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 48 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 49 H 0.13 3.39 8.04 -2.91 -0.02 3.37 16 50 H 0.10 2.21 8.02 -2.39 -0.02 2.19 16 51 H 0.05 1.17 6.41 -2.39 -0.02 1.16 16 Total: -1.00 -70.13 409.65 -0.98 -71.11 By element: Atomic # 1 Polarization: 51.36 SS G_CDS: -0.28 Total: 51.08 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 6.12 Total: -4.98 kcal Atomic # 7 Polarization: -124.65 SS G_CDS: -7.84 Total: -132.49 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -1.04 Total: -36.73 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 2.05 Total: 52.00 kcal Total: -70.13 -0.98 -71.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317730059.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.192 kcal (2) G-P(sol) polarization free energy of solvation -70.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds