Wall clock time and date at job start Wed Apr 1 2020 06:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46898 * 109.46842 * 2 1 4 4 C 1.47016 * 110.99994 * 66.05282 * 3 2 1 5 5 C 1.53097 * 109.25580 * 182.38964 * 4 3 2 6 6 O 1.43014 * 109.26075 * 303.14382 * 5 4 3 7 7 C 1.43023 * 113.73189 * 58.67394 * 6 5 4 8 8 H 1.09000 * 109.50533 * 61.31313 * 7 6 5 9 9 C 1.50706 * 109.50284 * 181.39367 * 7 6 5 10 10 O 1.21282 * 119.99965 * 5.00063 * 9 7 6 11 11 N 1.34770 * 119.99536 * 185.00475 * 9 7 6 12 12 C 1.46502 * 119.99749 * 179.97438 * 11 9 7 13 13 C 1.50700 * 109.47570 * 179.97438 * 12 11 9 14 14 C 1.38235 * 120.00120 * 269.72938 * 13 12 11 15 15 C 1.38237 * 119.99822 * 179.78334 * 14 13 12 16 16 C 1.38235 * 120.00107 * 0.44127 * 15 14 13 17 17 C 1.50699 * 120.00038 * 179.83179 * 16 15 14 18 18 N 1.46496 * 109.47140 * 269.98055 * 17 16 15 19 19 C 1.36932 * 119.99725 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00596 * 359.97438 * 19 18 17 21 21 C 1.38823 * 120.00078 * 179.97438 * 19 18 17 22 22 N 1.31621 * 119.99622 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00222 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.46946 * 90.00202 * 23 21 19 25 25 H 1.48494 * 109.47307 * 210.00441 * 23 21 19 26 26 H 1.48506 * 109.47168 * 330.00327 * 23 21 19 27 27 C 1.38240 * 119.99871 * 359.81282 * 16 15 14 28 28 C 1.38231 * 120.00079 * 359.97438 * 27 16 15 29 29 C 1.47015 * 110.99642 * 189.68284 * 3 2 1 30 30 H 1.09000 * 109.47304 * 59.99407 * 1 2 3 31 31 H 1.08998 * 109.46938 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46814 * 299.99450 * 1 2 3 33 33 H 1.09001 * 109.46814 * 240.00550 * 2 1 3 34 34 H 1.08991 * 109.47399 * 120.00320 * 2 1 3 35 35 H 1.09000 * 109.50136 * 302.32362 * 4 3 2 36 36 H 1.08996 * 109.50988 * 62.41201 * 4 3 2 37 37 H 1.08999 * 109.50517 * 63.08608 * 5 4 3 38 38 H 1.09000 * 109.50205 * 183.21065 * 5 4 3 39 39 H 0.96996 * 120.00465 * 359.97438 * 11 9 7 40 40 H 1.08995 * 109.47304 * 299.99840 * 12 11 9 41 41 H 1.09011 * 109.47394 * 59.99821 * 12 11 9 42 42 H 1.08006 * 119.99860 * 359.97438 * 14 13 12 43 43 H 1.08000 * 119.99968 * 180.27671 * 15 14 13 44 44 H 1.09000 * 109.47176 * 29.98046 * 17 16 15 45 45 H 1.09005 * 109.46805 * 149.97863 * 17 16 15 46 46 H 0.96994 * 120.00276 * 359.97438 * 18 17 16 47 47 H 0.97001 * 119.99902 * 180.02562 * 22 21 19 48 48 H 1.07997 * 119.99904 * 179.97438 * 27 16 15 49 49 H 1.07998 * 120.00140 * 180.02562 * 28 27 16 50 50 H 1.08999 * 109.50673 * 297.54208 * 29 3 2 51 51 H 1.09004 * 109.50788 * 57.67624 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6700 2.0674 1.2544 5 6 2.1453 3.5212 1.1877 6 8 3.5522 3.5462 0.9318 7 6 3.9281 2.8909 -0.2825 8 1 3.4554 3.3914 -1.1276 9 6 5.4260 2.9439 -0.4400 10 8 6.1128 3.4076 0.4456 11 7 6.0022 2.4760 -1.5649 12 6 7.4582 2.5280 -1.7183 13 6 7.8438 1.9467 -3.0541 14 6 8.1174 0.5964 -3.1673 15 6 8.4667 0.0625 -4.3936 16 6 8.5514 0.8803 -5.5048 17 6 8.9360 0.2989 -6.8408 18 7 10.3918 0.3514 -6.9955 19 6 10.9764 -0.1240 -8.1388 20 1 10.3643 -0.5380 -8.9265 21 6 12.3559 -0.0738 -8.2857 22 7 13.1019 0.4303 -7.3256 23 14 13.1535 -0.7229 -9.8451 24 1 13.2566 0.3733 -10.8415 25 1 14.5113 -1.2352 -9.5304 26 1 12.3265 -1.8229 -10.4032 27 6 8.2830 2.2316 -5.3905 28 6 7.9294 2.7648 -4.1652 29 6 3.4708 1.4307 -0.2309 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 0.5890 2.0438 1.3923 36 1 2.1547 1.5633 2.0904 37 1 1.6201 4.0394 0.3855 38 1 1.9392 4.0153 2.1372 39 1 5.4529 2.1049 -2.2730 40 1 7.7927 3.5639 -1.6623 41 1 7.9284 1.9509 -0.9219 42 1 8.0551 -0.0419 -2.2983 43 1 8.6761 -0.9933 -4.4829 44 1 8.6019 -0.7372 -6.8959 45 1 8.4649 0.8753 -7.6371 46 1 10.9415 0.7235 -6.2883 47 1 14.0659 0.4657 -7.4283 48 1 8.3496 2.8707 -6.2585 49 1 7.7193 3.8204 -4.0759 50 1 3.9849 0.9169 0.5814 51 1 3.7045 0.9424 -1.1770 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319008331.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:14 Heat of formation + Delta-G solvation = -36.380320 kcal Electronic energy + Delta-G solvation = -29440.868605 eV Core-core repulsion = 25340.444256 eV Total energy + Delta-G solvation = -4100.424349 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.76522 -39.55289 -38.82466 -36.62746 -35.53435 -34.38090 -32.61222 -31.78898 -31.37523 -30.74875 -30.14921 -27.90850 -26.59081 -24.95228 -24.31426 -22.99777 -22.51950 -22.33573 -21.08721 -20.68079 -20.44721 -18.01493 -17.31143 -17.15764 -16.64298 -16.16294 -15.89373 -15.71867 -15.45606 -15.40132 -15.05082 -14.74683 -14.58019 -14.46584 -14.35710 -14.02701 -13.40845 -13.30110 -13.24738 -13.17469 -12.89259 -12.58560 -12.45366 -12.36889 -12.25160 -12.08665 -11.95482 -11.86973 -11.39634 -11.24933 -11.09251 -10.88383 -10.75999 -10.61806 -10.19284 -10.08668 -10.02035 -9.79575 -9.33670 -8.99733 -8.92844 -8.71957 -8.47035 -6.97128 -5.78987 -3.09075 1.34600 1.61152 2.28236 2.59724 3.17094 3.41952 3.46751 3.48832 3.62860 3.98336 4.23159 4.32760 4.39236 4.48877 4.56038 4.59319 4.65640 4.71412 4.75817 4.91377 4.92991 4.94401 5.01830 5.15496 5.16236 5.20140 5.30289 5.34862 5.36288 5.36999 5.45703 5.54315 5.56532 5.69014 5.71354 5.82379 6.10066 6.12184 6.13957 6.17789 6.32111 6.36956 6.45711 6.55347 6.57025 6.60955 6.66475 7.07170 7.18105 7.22476 7.66392 7.93121 8.38595 9.50223 10.06047 10.41701 11.43380 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020579 B = 0.001654 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.311534 B =16921.109973 C =17834.184822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 N -0.535 5.535 4 C 0.011 3.989 5 C 0.063 3.937 6 O -0.356 6.356 7 C 0.079 3.921 8 H 0.094 0.906 9 C 0.519 3.481 10 O -0.517 6.517 11 N -0.720 5.720 12 C 0.167 3.833 13 C -0.125 4.125 14 C -0.103 4.103 15 C -0.106 4.106 16 C -0.063 4.063 17 C 0.184 3.816 18 N -0.726 5.726 19 C -0.244 4.244 20 H 0.072 0.928 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.106 4.106 28 C -0.103 4.103 29 C 0.029 3.971 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.063 0.937 38 H 0.104 0.896 39 H 0.403 0.597 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.386 0.614 47 H 0.256 0.744 48 H 0.124 0.876 49 H 0.119 0.881 50 H 0.051 0.949 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.416 2.706 17.220 32.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.261 5.261 4 C -0.117 4.117 5 C -0.014 4.014 6 O -0.273 6.273 7 C 0.017 3.983 8 H 0.112 0.888 9 C 0.303 3.697 10 O -0.392 6.392 11 N -0.374 5.374 12 C 0.045 3.955 13 C -0.126 4.126 14 C -0.122 4.122 15 C -0.125 4.125 16 C -0.064 4.064 17 C 0.057 3.943 18 N -0.371 5.371 19 C -0.375 4.375 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.125 4.125 28 C -0.121 4.121 29 C -0.100 4.100 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.110 0.890 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.122 0.878 39 H 0.237 0.763 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.137 0.863 43 H 0.142 0.858 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.220 0.780 47 H 0.066 0.934 48 H 0.142 0.858 49 H 0.137 0.863 50 H 0.069 0.931 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -26.966 3.303 17.465 32.297 hybrid contribution 0.703 -1.002 -0.506 1.324 sum -26.263 2.301 16.959 31.347 Atomic orbital electron populations 1.21800 0.94401 1.01910 1.02558 1.22128 0.96439 0.87954 1.01326 1.62266 1.12496 1.16739 1.34596 1.22902 1.02121 0.95800 0.90842 1.22761 0.81277 0.95080 1.02322 1.88135 1.23265 1.76455 1.39488 1.21927 0.92713 0.93530 0.90106 0.88833 1.20055 0.89018 0.78330 0.82294 1.90748 1.64232 1.43772 1.40413 1.46048 1.08345 1.63668 1.19342 1.20182 0.79317 1.01546 0.94453 1.19654 1.04427 0.94209 0.94307 1.20987 0.99426 0.94228 0.97526 1.21122 0.99049 1.00285 0.92041 1.20401 0.95677 0.93644 0.96652 1.19710 0.87423 0.97132 0.90031 1.42331 0.99404 1.74726 1.20638 1.19239 0.90157 1.33124 0.94956 0.91051 1.24772 0.96185 1.01715 0.98185 1.69676 1.04622 1.50882 1.32708 0.86163 0.78753 0.78429 0.82662 1.21664 1.21731 1.20725 1.21129 0.98832 0.94955 0.97554 1.20999 0.99591 0.99238 0.92283 1.22665 0.88607 0.95790 1.02897 0.91620 0.91980 0.92669 0.90239 0.94552 0.88996 0.93623 0.91893 0.87768 0.76262 0.90516 0.90593 0.86338 0.85810 0.95397 0.95388 0.78042 0.93438 0.85777 0.86259 0.93111 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.84 37.16 0.37 -0.29 16 2 C 0.05 0.27 5.68 -3.82 -0.02 0.25 16 3 N -0.54 -3.56 4.73 -234.31 -1.11 -4.67 16 4 C 0.01 0.07 5.43 -3.71 -0.02 0.05 16 5 C 0.06 0.43 7.01 37.21 0.26 0.69 16 6 O -0.36 -3.81 10.01 -55.06 -0.55 -4.36 16 7 C 0.08 0.70 3.22 -27.83 -0.09 0.61 16 8 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 9 C 0.52 5.82 7.18 -10.99 -0.08 5.74 16 10 O -0.52 -8.15 16.51 -14.27 -0.24 -8.38 16 11 N -0.72 -6.59 5.51 -61.47 -0.34 -6.92 16 12 C 0.17 1.79 5.80 -5.19 -0.03 1.76 16 13 C -0.13 -1.48 5.25 -104.62 -0.55 -2.03 16 14 C -0.10 -1.29 9.70 -39.58 -0.38 -1.67 16 15 C -0.11 -1.58 9.70 -39.58 -0.38 -1.97 16 16 C -0.06 -1.05 5.25 -104.62 -0.55 -1.60 16 17 C 0.18 3.66 6.38 -5.20 -0.03 3.63 16 18 N -0.73 -18.40 5.59 -61.09 -0.34 -18.74 16 19 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 23 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 C -0.11 -1.59 9.70 -39.58 -0.38 -1.97 16 28 C -0.10 -1.29 9.70 -39.58 -0.38 -1.68 16 29 C 0.03 0.21 4.89 -3.71 -0.02 0.19 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.05 0.23 6.51 -51.93 -0.34 -0.11 16 33 H 0.08 0.41 8.04 -51.93 -0.42 -0.01 16 34 H 0.04 0.21 8.12 -51.93 -0.42 -0.21 16 35 H 0.09 0.41 6.37 -51.93 -0.33 0.08 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.40 2.81 8.35 -40.82 -0.34 2.47 16 40 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 41 H 0.08 0.84 8.08 -51.92 -0.42 0.43 16 42 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 43 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 44 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 45 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 46 H 0.39 10.45 7.66 -40.82 -0.31 10.14 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 48 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 49 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 50 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 51 H 0.09 0.54 7.97 -51.93 -0.41 0.13 16 LS Contribution 417.23 15.07 6.29 6.29 Total: -1.00 -34.17 417.23 -11.58 -45.76 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -8.45 Total: 6.95 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -2.55 Total: -5.67 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -1.06 Total: -57.83 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -0.79 Total: -12.74 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.17 -11.58 -45.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319008331.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.376 kcal (2) G-P(sol) polarization free energy of solvation -34.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds