Wall clock time and date at job start Wed Apr 1 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46898 * 109.46842 * 2 1 4 4 C 1.47016 * 110.99994 * 66.05282 * 3 2 1 5 5 C 1.53097 * 109.25580 * 182.38964 * 4 3 2 6 6 O 1.43014 * 109.26075 * 303.14382 * 5 4 3 7 7 C 1.43023 * 113.73189 * 58.67394 * 6 5 4 8 8 H 1.09000 * 109.50533 * 61.31313 * 7 6 5 9 9 C 1.50706 * 109.50284 * 181.39367 * 7 6 5 10 10 O 1.21282 * 119.99965 * 5.00063 * 9 7 6 11 11 N 1.34770 * 119.99536 * 185.00475 * 9 7 6 12 12 C 1.46502 * 119.99749 * 179.97438 * 11 9 7 13 13 C 1.50700 * 109.47570 * 179.97438 * 12 11 9 14 14 C 1.38235 * 120.00120 * 269.72938 * 13 12 11 15 15 C 1.38237 * 119.99822 * 179.78334 * 14 13 12 16 16 C 1.38235 * 120.00107 * 0.44127 * 15 14 13 17 17 C 1.50699 * 120.00038 * 179.83179 * 16 15 14 18 18 N 1.46496 * 109.47140 * 269.98055 * 17 16 15 19 19 C 1.36932 * 119.99725 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00596 * 359.97438 * 19 18 17 21 21 C 1.38823 * 120.00078 * 179.97438 * 19 18 17 22 22 N 1.31621 * 119.99622 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00222 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.46946 * 90.00202 * 23 21 19 25 25 H 1.48494 * 109.47307 * 210.00441 * 23 21 19 26 26 H 1.48506 * 109.47168 * 330.00327 * 23 21 19 27 27 C 1.38240 * 119.99871 * 359.81282 * 16 15 14 28 28 C 1.38231 * 120.00079 * 359.97438 * 27 16 15 29 29 C 1.47015 * 110.99642 * 189.68284 * 3 2 1 30 30 H 1.09000 * 109.47304 * 59.99407 * 1 2 3 31 31 H 1.08998 * 109.46938 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46814 * 299.99450 * 1 2 3 33 33 H 1.09001 * 109.46814 * 240.00550 * 2 1 3 34 34 H 1.08991 * 109.47399 * 120.00320 * 2 1 3 35 35 H 1.09000 * 109.50136 * 302.32362 * 4 3 2 36 36 H 1.08996 * 109.50988 * 62.41201 * 4 3 2 37 37 H 1.08999 * 109.50517 * 63.08608 * 5 4 3 38 38 H 1.09000 * 109.50205 * 183.21065 * 5 4 3 39 39 H 0.96996 * 120.00465 * 359.97438 * 11 9 7 40 40 H 1.08995 * 109.47304 * 299.99840 * 12 11 9 41 41 H 1.09011 * 109.47394 * 59.99821 * 12 11 9 42 42 H 1.08006 * 119.99860 * 359.97438 * 14 13 12 43 43 H 1.08000 * 119.99968 * 180.27671 * 15 14 13 44 44 H 1.09000 * 109.47176 * 29.98046 * 17 16 15 45 45 H 1.09005 * 109.46805 * 149.97863 * 17 16 15 46 46 H 0.96994 * 120.00276 * 359.97438 * 18 17 16 47 47 H 0.97001 * 119.99902 * 180.02562 * 22 21 19 48 48 H 1.07997 * 119.99904 * 179.97438 * 27 16 15 49 49 H 1.07998 * 120.00140 * 180.02562 * 28 27 16 50 50 H 1.08999 * 109.50673 * 297.54208 * 29 3 2 51 51 H 1.09004 * 109.50788 * 57.67624 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6700 2.0674 1.2544 5 6 2.1453 3.5212 1.1877 6 8 3.5522 3.5462 0.9318 7 6 3.9281 2.8909 -0.2825 8 1 3.4554 3.3914 -1.1276 9 6 5.4260 2.9439 -0.4400 10 8 6.1128 3.4076 0.4456 11 7 6.0022 2.4760 -1.5649 12 6 7.4582 2.5280 -1.7183 13 6 7.8438 1.9467 -3.0541 14 6 8.1174 0.5964 -3.1673 15 6 8.4667 0.0625 -4.3936 16 6 8.5514 0.8803 -5.5048 17 6 8.9360 0.2989 -6.8408 18 7 10.3918 0.3514 -6.9955 19 6 10.9764 -0.1240 -8.1388 20 1 10.3643 -0.5380 -8.9265 21 6 12.3559 -0.0738 -8.2857 22 7 13.1019 0.4303 -7.3256 23 14 13.1535 -0.7229 -9.8451 24 1 13.2566 0.3733 -10.8415 25 1 14.5113 -1.2352 -9.5304 26 1 12.3265 -1.8229 -10.4032 27 6 8.2830 2.2316 -5.3905 28 6 7.9294 2.7648 -4.1652 29 6 3.4708 1.4307 -0.2309 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 0.5890 2.0438 1.3923 36 1 2.1547 1.5633 2.0904 37 1 1.6201 4.0394 0.3855 38 1 1.9392 4.0153 2.1372 39 1 5.4529 2.1049 -2.2730 40 1 7.7927 3.5639 -1.6623 41 1 7.9284 1.9509 -0.9219 42 1 8.0551 -0.0419 -2.2983 43 1 8.6761 -0.9933 -4.4829 44 1 8.6019 -0.7372 -6.8959 45 1 8.4649 0.8753 -7.6371 46 1 10.9415 0.7235 -6.2883 47 1 14.0659 0.4657 -7.4283 48 1 8.3496 2.8707 -6.2585 49 1 7.7193 3.8204 -4.0759 50 1 3.9849 0.9169 0.5814 51 1 3.7045 0.9424 -1.1770 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319008331.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:13 Heat of formation + Delta-G solvation = -59.833961 kcal Electronic energy + Delta-G solvation = -29441.885631 eV Core-core repulsion = 25340.444256 eV Total energy + Delta-G solvation = -4101.441375 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.51586 -40.52276 -39.71743 -37.23959 -36.88338 -35.79469 -33.87827 -32.88789 -31.84138 -31.83907 -31.59566 -28.86892 -27.64798 -25.97603 -25.37563 -24.15500 -23.61487 -23.38584 -21.72467 -21.66268 -21.35062 -19.32768 -18.78294 -17.92101 -17.27273 -17.02258 -16.86378 -16.60951 -16.42271 -16.34010 -16.16937 -15.95659 -15.49169 -15.27683 -15.24694 -15.13635 -14.88853 -14.58689 -14.32804 -14.05380 -13.89863 -13.69524 -13.42500 -13.10967 -13.03093 -12.99021 -12.87727 -12.76773 -12.73332 -12.49924 -12.19350 -11.96313 -11.90038 -11.80220 -11.78827 -11.72338 -10.98452 -10.95392 -10.77380 -10.21440 -9.80744 -9.63568 -9.51207 -9.03322 -7.95928 -5.26194 0.23863 0.51878 1.43081 1.47715 1.49629 1.58170 1.81267 2.54718 2.64574 2.80932 3.08682 3.37337 3.61358 3.63641 3.71767 3.88558 3.90460 3.95478 4.03716 4.05857 4.15046 4.24474 4.24951 4.27853 4.30168 4.48344 4.49099 4.57449 4.60188 4.64465 4.68992 4.70328 4.72907 4.88317 4.90598 4.90908 4.99465 5.08112 5.08373 5.21096 5.26239 5.35147 5.46734 5.47768 5.60573 5.81937 5.82552 5.91020 5.98345 6.07256 6.24750 6.45499 7.11066 7.31487 8.04819 8.29581 9.27263 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020579 B = 0.001654 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.311534 B =16921.109973 C =17834.184822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.047 3.953 3 N -0.537 5.537 4 C 0.013 3.987 5 C 0.059 3.941 6 O -0.389 6.389 7 C 0.083 3.917 8 H 0.113 0.887 9 C 0.520 3.480 10 O -0.568 6.568 11 N -0.704 5.704 12 C 0.172 3.828 13 C -0.109 4.109 14 C -0.096 4.096 15 C -0.115 4.115 16 C -0.086 4.086 17 C 0.185 3.815 18 N -0.739 5.739 19 C -0.249 4.249 20 H 0.079 0.921 21 C -0.075 4.075 22 N -0.969 5.969 23 Si 0.977 3.023 24 H -0.286 1.286 25 H -0.296 1.296 26 H -0.268 1.268 27 C -0.116 4.116 28 C -0.097 4.097 29 C 0.034 3.966 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.032 0.968 35 H 0.111 0.889 36 H 0.034 0.966 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.416 0.584 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.142 0.858 43 H 0.122 0.878 44 H 0.031 0.969 45 H 0.031 0.969 46 H 0.373 0.627 47 H 0.251 0.749 48 H 0.121 0.879 49 H 0.142 0.858 50 H 0.034 0.966 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.500 2.461 17.216 34.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 N -0.263 5.263 4 C -0.115 4.115 5 C -0.018 4.018 6 O -0.308 6.308 7 C 0.021 3.979 8 H 0.130 0.870 9 C 0.306 3.694 10 O -0.446 6.446 11 N -0.358 5.358 12 C 0.049 3.951 13 C -0.110 4.110 14 C -0.115 4.115 15 C -0.134 4.134 16 C -0.087 4.087 17 C 0.059 3.941 18 N -0.382 5.382 19 C -0.380 4.380 20 H 0.097 0.903 21 C -0.268 4.268 22 N -0.620 5.620 23 Si 0.806 3.194 24 H -0.213 1.213 25 H -0.222 1.222 26 H -0.192 1.192 27 C -0.134 4.134 28 C -0.115 4.115 29 C -0.094 4.094 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.050 0.950 35 H 0.129 0.871 36 H 0.052 0.948 37 H 0.091 0.909 38 H 0.135 0.865 39 H 0.254 0.746 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.160 0.840 43 H 0.140 0.860 44 H 0.049 0.951 45 H 0.048 0.952 46 H 0.205 0.795 47 H 0.060 0.940 48 H 0.139 0.861 49 H 0.160 0.840 50 H 0.052 0.948 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -29.127 3.028 17.418 34.072 hybrid contribution 1.228 -0.902 -0.432 1.584 sum -27.899 2.126 16.986 32.732 Atomic orbital electron populations 1.21769 0.93460 1.02472 1.02543 1.22194 0.97187 0.87286 1.01362 1.62318 1.11787 1.17434 1.34742 1.22921 1.03077 0.95197 0.90291 1.22970 0.79628 0.95787 1.03383 1.88092 1.25452 1.76939 1.40282 1.21954 0.90935 0.94642 0.90339 0.86971 1.20498 0.89940 0.77215 0.81758 1.90725 1.65476 1.46209 1.42184 1.45868 1.07875 1.62824 1.19236 1.20072 0.80141 1.01337 0.93522 1.19739 1.02913 0.93839 0.94465 1.21193 0.98183 0.94815 0.97287 1.21169 0.99538 1.00186 0.92491 1.20173 0.98231 0.94675 0.95603 1.19774 0.84438 0.97492 0.92368 1.42540 1.01621 1.74435 1.19601 1.19679 0.90634 1.31971 0.95733 0.90318 1.25621 0.96896 1.02809 1.01431 1.69839 1.04448 1.52847 1.34824 0.85092 0.77395 0.78058 0.78904 1.21325 1.22234 1.19242 1.21172 0.99374 0.94283 0.98600 1.21201 0.98481 1.00438 0.91404 1.22624 0.89047 0.94584 1.03195 0.91896 0.91188 0.92352 0.89779 0.94971 0.87145 0.94759 0.90893 0.86531 0.74650 0.90685 0.90684 0.83987 0.86020 0.95127 0.95155 0.79517 0.93991 0.86054 0.84015 0.94773 0.87064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.84 71.98 0.71 -0.27 16 2 C 0.05 0.43 5.68 86.31 0.49 0.92 16 3 N -0.54 -6.13 4.73 -895.22 -4.23 -10.37 16 4 C 0.01 0.14 5.43 86.31 0.47 0.61 16 5 C 0.06 0.72 7.01 72.01 0.50 1.22 16 6 O -0.39 -8.03 10.01 -130.02 -1.30 -9.34 16 7 C 0.08 1.35 3.22 29.88 0.10 1.45 16 8 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 9 C 0.52 11.07 7.18 87.66 0.63 11.70 16 10 O -0.57 -17.80 16.51 15.92 0.26 -17.54 16 11 N -0.70 -11.40 5.51 -466.78 -2.57 -13.97 16 12 C 0.17 3.32 5.80 85.63 0.50 3.82 16 13 C -0.11 -2.32 5.25 -19.86 -0.10 -2.43 16 14 C -0.10 -2.21 9.70 22.27 0.22 -2.00 16 15 C -0.12 -3.33 9.70 22.27 0.22 -3.11 16 16 C -0.09 -2.84 5.25 -19.87 -0.10 -2.95 16 17 C 0.18 7.41 6.38 85.63 0.55 7.96 16 18 N -0.74 -37.98 5.59 -347.18 -1.94 -39.93 16 19 C -0.25 -13.92 9.99 84.04 0.84 -13.08 16 20 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 21 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 22 N -0.97 -59.83 13.06 21.66 0.28 -59.54 16 23 Si 0.98 46.03 29.55 68.60 2.03 48.06 16 24 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 25 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 C -0.12 -3.37 9.70 22.27 0.22 -3.15 16 28 C -0.10 -2.25 9.70 22.27 0.22 -2.03 16 29 C 0.03 0.45 4.89 86.31 0.42 0.87 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.06 0.36 6.51 -2.39 -0.02 0.34 16 33 H 0.08 0.69 8.04 -2.39 -0.02 0.67 16 34 H 0.03 0.33 8.12 -2.39 -0.02 0.31 16 35 H 0.11 0.76 6.37 -2.39 -0.02 0.74 16 36 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.42 4.62 8.35 -92.71 -0.77 3.85 16 40 H 0.07 1.54 8.09 -2.39 -0.02 1.52 16 41 H 0.07 1.53 8.08 -2.38 -0.02 1.51 16 42 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 43 H 0.12 3.49 8.06 -2.91 -0.02 3.47 16 44 H 0.03 1.21 8.09 -2.39 -0.02 1.19 16 45 H 0.03 1.20 8.09 -2.38 -0.02 1.18 16 46 H 0.37 20.72 7.66 -92.71 -0.71 20.01 16 47 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 48 H 0.12 3.52 8.06 -2.91 -0.02 3.50 16 49 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 50 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.11 1.00 7.97 -2.38 -0.02 0.98 16 Total: -1.00 -74.48 417.23 -1.71 -76.18 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: -0.55 Total: 30.79 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 6.32 Total: -4.35 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -8.47 Total: -123.81 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -1.04 Total: -26.87 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -74.48 -1.71 -76.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319008331.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.348 kcal (2) G-P(sol) polarization free energy of solvation -74.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds