Wall clock time and date at job start Wed Apr 1 2020 04:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46499 * 109.47658 * 184.99947 * 4 2 1 6 6 C 1.34782 * 120.00273 * 180.02562 * 5 4 2 7 7 O 1.21337 * 119.99932 * 0.02562 * 6 5 4 8 8 C 1.49446 * 119.99728 * 180.02562 * 6 5 4 9 9 O 1.21351 * 120.00385 * 359.97438 * 8 6 5 10 10 N 1.34782 * 119.99728 * 180.02562 * 8 6 5 11 11 C 1.46496 * 119.99778 * 180.02562 * 10 8 6 12 12 C 1.53005 * 109.47116 * 180.02562 * 11 10 8 13 13 C 1.50700 * 109.47102 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00302 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99410 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00754 * 0.02562 * 15 13 12 17 17 Si 1.86810 * 119.99630 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46582 * 60.00498 * 17 15 13 19 19 H 1.48495 * 109.46943 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47328 * 300.00706 * 17 15 13 21 21 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 22 22 C 1.46900 * 110.99736 * 58.95813 * 21 2 1 23 23 C 1.46895 * 111.00186 * 295.00225 * 21 2 1 24 24 C 1.50703 * 109.46874 * 189.99595 * 23 21 2 25 25 C 1.38233 * 120.00153 * 269.72578 * 24 23 21 26 26 C 1.38239 * 119.99804 * 179.76946 * 25 24 23 27 27 C 1.38236 * 120.00066 * 0.50949 * 26 25 24 28 28 C 1.38239 * 119.99878 * 359.74068 * 27 26 25 29 29 C 1.38233 * 119.99808 * 0.02562 * 28 27 26 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 34 34 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 35 35 H 0.97002 * 119.99938 * 0.02562 * 5 4 2 36 36 H 0.96993 * 119.99847 * 359.97438 * 10 8 6 37 37 H 1.09000 * 109.47190 * 299.99601 * 11 10 8 38 38 H 1.09003 * 109.47621 * 59.99849 * 11 10 8 39 39 H 1.09000 * 109.46692 * 299.99816 * 12 11 10 40 40 H 1.08994 * 109.46972 * 59.99627 * 12 11 10 41 41 H 0.96996 * 120.00335 * 179.97438 * 16 15 13 42 42 H 1.08997 * 109.47292 * 59.99623 * 22 21 2 43 43 H 1.09002 * 109.47267 * 179.97438 * 22 21 2 44 44 H 1.09000 * 109.47210 * 300.00139 * 22 21 2 45 45 H 1.08999 * 109.47066 * 309.99575 * 23 21 2 46 46 H 1.09001 * 109.47511 * 70.00176 * 23 21 2 47 47 H 1.07997 * 120.00342 * 359.97438 * 25 24 23 48 48 H 1.08002 * 119.99685 * 180.23621 * 26 25 24 49 49 H 1.08001 * 119.99924 * 179.72982 * 27 26 25 50 50 H 1.08001 * 119.99698 * 179.97438 * 28 27 26 51 51 H 1.08000 * 119.99812 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 3.5001 -0.8264 -1.1905 6 6 4.1732 -1.4283 -2.1911 7 8 3.5699 -1.8827 -3.1407 8 6 5.6625 -1.5360 -2.1309 9 8 6.2659 -1.0811 -1.1814 10 7 6.3357 -2.1375 -3.1318 11 6 7.7956 -2.2436 -3.0725 12 6 8.3059 -2.9629 -4.3228 13 6 9.8077 -3.0715 -4.2621 14 1 10.3446 -2.6682 -3.4162 15 6 10.4962 -3.6867 -5.2860 16 7 9.8425 -4.1783 -6.3158 17 14 12.3580 -3.8207 -5.2112 18 1 12.7507 -4.5888 -4.0025 19 1 12.8531 -4.5189 -6.4246 20 1 12.9500 -2.4603 -5.1472 21 7 2.0196 -0.6924 1.1995 22 6 1.5283 -2.0760 1.2460 23 6 1.6487 0.0393 2.4181 24 6 2.3678 -0.5571 3.6006 25 6 1.7822 -1.5810 4.3213 26 6 2.4440 -2.1312 5.4031 27 6 3.6868 -1.6503 5.7705 28 6 4.2702 -0.6228 5.0529 29 6 3.6105 -0.0760 3.9682 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.6054 -1.7198 -1.2951 34 1 1.7517 -0.1584 -2.1369 35 1 3.9824 -0.4628 -0.4315 36 1 5.8534 -2.5007 -3.8909 37 1 8.2308 -1.2453 -3.0251 38 1 8.0833 -2.8078 -2.1853 39 1 7.8707 -3.9612 -4.3706 40 1 8.0182 -2.3983 -5.2096 41 1 10.3270 -4.6107 -7.0363 42 1 1.8762 -2.6150 0.3648 43 1 1.9060 -2.5657 2.1436 44 1 0.4385 -2.0742 1.2639 45 1 1.9297 1.0871 2.3124 46 1 0.5722 -0.0344 2.5727 47 1 0.8090 -1.9534 4.0373 48 1 1.9881 -2.9337 5.9638 49 1 4.2020 -2.0772 6.6184 50 1 5.2411 -0.2469 5.3403 51 1 4.0661 0.7270 3.4078 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322749942.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:46 Heat of formation + Delta-G solvation = -46.998983 kcal Electronic energy + Delta-G solvation = -29712.798969 eV Core-core repulsion = 25611.914160 eV Total energy + Delta-G solvation = -4100.884809 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.47478 -39.89992 -38.68137 -37.90120 -35.30538 -34.52199 -32.86037 -32.52972 -31.20758 -30.45876 -29.76504 -27.82934 -27.15918 -25.40823 -24.71578 -23.03991 -22.79897 -21.47604 -20.96479 -20.34933 -19.88922 -18.12554 -17.09304 -16.92004 -16.75821 -16.27209 -15.86380 -15.77210 -15.57159 -15.25872 -14.79313 -14.57564 -14.52687 -14.41193 -14.19248 -13.76761 -13.67505 -13.37327 -13.31618 -12.95870 -12.85057 -12.74228 -12.40897 -12.34400 -12.28884 -11.95491 -11.84908 -11.39975 -11.30673 -11.24294 -11.19937 -11.14430 -11.02132 -10.66192 -10.34989 -9.75321 -9.40542 -9.23088 -9.16878 -9.14106 -9.09000 -8.67524 -8.62871 -8.38262 -6.07508 -4.11117 1.03995 1.14561 1.72503 2.63926 3.29874 3.32421 3.36424 3.39389 3.53832 3.75749 4.03187 4.28011 4.36980 4.42953 4.51374 4.62818 4.73444 4.77840 4.81695 4.87360 4.89064 4.97236 5.12162 5.16489 5.21591 5.24148 5.29146 5.30205 5.37405 5.40151 5.51799 5.68107 5.71463 5.75663 5.77314 6.16796 6.22693 6.23805 6.25943 6.28816 6.31608 6.58087 6.63194 6.66101 6.73975 6.75629 7.21727 7.51839 7.61596 7.78019 7.90152 8.03788 8.26167 8.42061 8.94314 9.53526 11.03930 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011917 B = 0.001964 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.963439 B =14252.389239 C =16055.588217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.067 3.933 3 H 0.094 0.906 4 C 0.126 3.874 5 N -0.692 5.692 6 C 0.506 3.494 7 O -0.527 6.527 8 C 0.497 3.503 9 O -0.531 6.531 10 N -0.688 5.688 11 C 0.119 3.881 12 C 0.011 3.989 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.898 3.102 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 N -0.528 5.528 22 C 0.012 3.988 23 C 0.093 3.907 24 C -0.079 4.079 25 C -0.115 4.115 26 C -0.123 4.123 27 C -0.120 4.120 28 C -0.119 4.119 29 C -0.096 4.096 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.420 0.580 36 H 0.410 0.590 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.263 0.737 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.031 0.969 45 H 0.084 0.916 46 H 0.046 0.954 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.884 9.033 21.400 32.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.042 4.042 3 H 0.112 0.888 4 C 0.002 3.998 5 N -0.347 5.347 6 C 0.286 3.714 7 O -0.403 6.403 8 C 0.276 3.724 9 O -0.409 6.409 10 N -0.339 5.339 11 C -0.002 4.002 12 C -0.026 4.026 13 C -0.562 4.562 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.726 3.274 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 N -0.251 5.251 22 C -0.136 4.136 23 C -0.034 4.034 24 C -0.079 4.079 25 C -0.133 4.133 26 C -0.141 4.141 27 C -0.139 4.139 28 C -0.137 4.137 29 C -0.115 4.115 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.257 0.743 36 H 0.245 0.755 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.050 0.950 45 H 0.102 0.898 46 H 0.064 0.936 47 H 0.135 0.865 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.140 0.860 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.325 8.918 21.171 32.034 hybrid contribution 0.115 -0.224 -0.003 0.252 sum -22.210 8.694 21.169 31.890 Atomic orbital electron populations 1.22393 0.96135 1.02946 1.02979 1.22028 0.93680 0.98849 0.89660 0.88810 1.21485 0.80083 1.01223 0.97000 1.45592 1.07270 1.58209 1.23590 1.20446 0.88975 0.78970 0.82964 1.90743 1.70022 1.46681 1.32887 1.19997 0.87692 0.80593 0.84069 1.90732 1.69646 1.47589 1.32946 1.46216 1.09902 1.55657 1.22126 1.21909 0.75164 1.01236 1.01931 1.19350 0.96551 0.95742 0.90983 1.20981 0.91163 1.38127 1.05914 0.92225 1.25002 0.98796 0.95214 0.95274 1.69946 1.35865 1.38238 1.09057 0.86558 0.85105 0.78352 0.77424 1.20104 1.21254 1.20109 1.62189 1.59365 1.02619 1.00953 1.22571 0.97815 0.89529 1.03636 1.21056 0.97049 0.97792 0.87468 1.19686 0.95366 0.96855 0.96042 1.21024 0.99894 0.96538 0.95870 1.21108 0.95512 1.00066 0.97419 1.21176 0.95658 0.97068 0.99952 1.21203 0.99919 0.96815 0.95803 1.21058 0.94071 0.99952 0.96377 0.91714 0.91325 0.91846 0.91013 0.90513 0.74273 0.75472 0.91941 0.91944 0.95694 0.95683 0.92738 0.90953 0.90760 0.95030 0.89794 0.93605 0.86547 0.86270 0.86235 0.85985 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.94 8.50 37.16 0.32 -0.62 16 2 C 0.07 0.43 2.50 -67.72 -0.17 0.27 16 3 H 0.09 0.57 8.03 -51.93 -0.42 0.15 16 4 C 0.13 1.14 4.69 -4.05 -0.02 1.12 16 5 N -0.69 -8.21 5.38 -60.74 -0.33 -8.54 16 6 C 0.51 7.78 7.89 -11.58 -0.09 7.69 16 7 O -0.53 -9.08 16.48 5.51 0.09 -8.99 16 8 C 0.50 8.85 7.89 -11.58 -0.09 8.76 16 9 O -0.53 -10.39 16.48 5.50 0.09 -10.30 16 10 N -0.69 -12.91 5.55 -60.73 -0.34 -13.25 16 11 C 0.12 2.55 5.61 -4.04 -0.02 2.53 16 12 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 13 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 17 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 N -0.53 -3.90 4.18 -236.34 -0.99 -4.89 16 22 C 0.01 0.09 8.48 60.06 0.51 0.60 16 23 C 0.09 0.60 4.56 -4.98 -0.02 0.58 16 24 C -0.08 -0.62 4.88 -104.62 -0.51 -1.13 16 25 C -0.11 -0.86 7.92 -39.58 -0.31 -1.18 16 26 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 27 C -0.12 -0.95 10.05 -39.58 -0.40 -1.34 16 28 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 29 C -0.10 -0.81 9.70 -39.58 -0.38 -1.20 16 30 H 0.06 0.35 6.38 -51.93 -0.33 0.02 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.29 6.75 -51.93 -0.35 -0.06 16 33 H 0.07 0.69 6.70 -51.93 -0.35 0.34 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.42 4.93 7.61 -40.82 -0.31 4.62 16 36 H 0.41 7.35 7.94 -40.82 -0.32 7.03 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.07 0.65 6.44 -51.93 -0.33 0.31 16 43 H 0.07 0.62 5.91 -51.93 -0.31 0.31 16 44 H 0.03 0.20 6.28 -51.93 -0.33 -0.13 16 45 H 0.08 0.49 7.94 -51.93 -0.41 0.07 16 46 H 0.05 0.26 6.88 -51.93 -0.36 -0.10 16 47 H 0.12 0.71 8.00 -52.49 -0.42 0.29 16 48 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 49 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 50 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 51 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 416.64 15.07 6.28 6.28 Total: -1.00 -32.08 416.64 -10.03 -42.11 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -8.01 Total: 6.52 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -2.55 Total: 0.22 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.92 Total: -52.25 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.18 Total: -19.29 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.08 -10.03 -42.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322749942.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.893 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds